FvH4_3g39961

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018014
Physical Location & Seq
Reverse (-)
33837701 .. 33839452
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39961.t1

Sequence Viewer

Length: 1650 bp
ATGTTCCATAGAAGACTATCATATGCCAAGACCATCGGTAATCTCGTCAACCAGGGGCAAAATAGTCAAGCAATAGCTCTGTTTCGCCTAGTGCGGGAAAACGGGTTTGAAGTCACAGAGTTTCTTCTCTCAGCGATTCTGCGAGCTTGTGGAAGAGTCTCTGCATTAAAACAAGGCAAGCAGCTTCACTGCATGGCCATCAAACATGGGTTCAATCACGACACGATTCTAATGACGTCACTTCTTGACTTGTACTGTAAATGCAATGAGATCAAAGACGCCCGAAAAGTGTTTGATGAAATGCCTCAGAGAGATGTGATTGCCAATAACTGCATGATCTCTGGACTGTGTTGGTCTCGATTGACTTTAGAGGCGATTGGGTTGTTTAACAACATGTCGAAAAGAGACGTTGGGTCTTGGAATTCGCTGATTTCGGGCCTTGCGCAGAACTCGGAAGGGAGGGCCGGATTGGCTTTGTTTGAGGAAATGAGAGTGGAGGGAGCTGAGGTTGATGTGTTGACCATGGTGAGTGTTGTTTCGATTTGTGCTGATCTTGCGGCGTTGCGTAACGGTAGGGAAGTGCATTGTTTGGTGATGAAGTATGGATTCGAGTTGTATTTGCCCGTTGGGAATGCTGTTGTTGACATGTATGCGAAATGTGGGTGCATGGAGAATGCTTGGTTGTGTTTCAGGAGCATGCCTATGAAGAATGTGGTTTCGTGGACTGCTTTGATTGCCGGTTATGGGAAACAAGGCCAGGGAGTAGAAGCTTTGAAGGCGTTTGATGCAATGGAAATAGGAGGTGTTTGGCCAAACAGTATCACATTCTTGGGTGCGTTGTATGCGTGTAGTCATGCAGGATTAGTACAAGAAGGATGGAGGATTTTCAACATGATGGTGAGTAAGTACTCGATCGCACCCACGATGGAGCATTATACATGTATGGTGGATCTTCTAGCACGATCAGGGTGTTTCAATGAGGCGTACAGCTTCATCAAGAGGATGCCTATAAAACCAGACCCAAAGTTGCTGACAGCATTTCTAAGTTCATGTTACTCCTACAAGAAGTTAGAGCTAGGAAAGATTGTTGGGAAGAAACTAATTGAATCAGAACCTGAAGAAGCAGGAGCCTATATGTTGCTCTCCAACTTCTATGGGATTGTTGGGGACCTTGCGAGTGTGGCAAAAGTGAGAAGATTAATGCTAGATAGAGGAATAAGAAAGGAAAAGGCAAGCACTTGGATTGAGATTAACAAAACTGTTCACAGCTTTCAGTCAGGAGACAGATCACATCCCTTAAGTGAAGACATGTACAGCTACTTGCAACATCTTTTCCGGAAGTTGAAAATTAACGGGTATGTTCCAAACACAAGCATGGTGATGCAAAACGTGGATGAACAGACAAAGGAGGTGATAGTCCTCGGTCATAGTGAGAAACTGGCAATTGCATTTGGCCTAATCAGCACGCCTCCAGGTACCCGTATCCTTATAGTTAAGAACCTAAGAATGTGCACAGACTGTCATGTAGTAACCGGCTTAATTTCCAAGATTGAAGGGAGGGAGATTGTTGCAAGGGACTCGAGTCGGTTCCATCATTTCAAAGATGGACTATGCTCTTGTGGAAATCATTGTCGGAAGTGTTTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

550

Amino Acids

61.38

Weight (kDa)

8.79

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 107 3.8e-06 PPR repeat family
PPR_2 PF13041 136 - 182 1.6e-06 PPR repeat family
PPR_2 PF13041 236 - 280 4.5e-09 PPR repeat family
E_motif PF20431 354 - 416 1e-10 E motif
DYW_deaminase PF14432 452 - 543 6.7e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018014)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39961
prunus_persica Prupe.6G045500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071981
rosa_laevigata RLG00000036268
rosa_multiflora Rmu_co8282069.1_g000001
rosa_roxburghii Rroxscaffold_1G00009160
rosa_rugosa Rorug05G0415900
rosa_samantha Rh5AG471900 Rh5BG491900 Rh5CG515700
rosa_wichuraiana Rw5G043870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 239
Acc16I TGCGCA 1 cut(s) 444
Acc65I GGTACC 1 cut(s) 1475
AccB1I GGYRCC 1 cut(s) 1475
AccIII TCCGGA 1 cut(s) 1335
AciI CCGC 2 cut(s) 94, 557
AclWI GGATC 1 cut(s) 957
AcoI YGGCCR 2 cut(s) 195, 809
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 1137
AcyI GRCGYC 2 cut(s) 236, 279
AfaI GTAC 6 cut(s) 254, 867, 908, 986, 1313, 1477
AfiI CCNNNNNNNGG 2 cut(s) 94, 744
AflII CTTAAG 1 cut(s) 1297
AflIII ACRYGT 4 cut(s) 393, 645, 938, 1308
AgsI TTSAA 9 cut(s) 110, 214, 775, 889, 976, 1106, 1345, 1553, 1600
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 3 cut(s) 51, 756, 1471
AluBI AGCT 9 cut(s) 77, 146, 184, 503, 770, 990, 1075, 1269, 1317
AluI AGCT 9 cut(s) 77, 146, 184, 503, 770, 990, 1075, 1269, 1317
Alw21I GWGCWC 1 cut(s) 1514
Alw26I GTCTC 4 cut(s) 163, 360, 399, 1275
Alw44I GTGCAC 1 cut(s) 1510
AlwI GGATC 1 cut(s) 957
AlwNI CAGNNNCTG 1 cut(s) 1115
Ama87I CYCGRG 1 cut(s) 1579
Aor13HI TCCGGA 1 cut(s) 1335
AoxI GGCC 6 cut(s) 195, 436, 462, 754, 809, 1453
ApaLI GTGCAC 1 cut(s) 1510
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 421
AseI ATTAAT 1 cut(s) 1199
Asp700I GAANNNNTTC 1 cut(s) 1640
Asp718I GGTACC 1 cut(s) 1475
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 436, 462, 1168
AsuHPI GGTGA 5 cut(s) 538, 604, 910, 1390, 1423
AvaI CYCGRG 1 cut(s) 1579
AvaII GGWCC 1 cut(s) 1168
BaeGI GKGCMC 1 cut(s) 1514
BalI TGGCCA 2 cut(s) 197, 811
BanI GGYRCC 1 cut(s) 1475
BbsI GAAGAC 2 cut(s) 19, 1311
Bbv12I GWGCWC 1 cut(s) 1514
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 193
BccI CCATC 7 cut(s) 41, 206, 870, 889, 919, 1598, 1599
BcgI CGANNNNNNTGC 2 cut(s) 1560, 1594
BciT130I CCWGG 3 cut(s) 53, 758, 1473
BciVI GTATCC 1 cut(s) 1493
BcoDI GTCTC 4 cut(s) 163, 360, 399, 1275
BfaI CTAG 4 cut(s) 89, 956, 1076, 1205
BfmI CTRYAG 1 cut(s) 1646
BfrI CTTAAG 1 cut(s) 1297
BfuI GTATCC 1 cut(s) 1493
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 2 cut(s) 182, 558
BlsI GCNGC 2 cut(s) 183, 559
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 3 cut(s) 53, 758, 1473
Bme18I GGWCC 1 cut(s) 1168
BmeRI GACNNNNNGTC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 1579
BmgT120I GGNCC 3 cut(s) 436, 462, 1168
BmiI GGNNCC 4 cut(s) 1129, 1169, 1477, 1589
BmrFI CCNGG 3 cut(s) 53, 758, 1473
BmsI GCATC 3 cut(s) 775, 993, 1371
BoxI GACNNNNGTC 1 cut(s) 1581
BpiI GAAGAC 2 cut(s) 19, 1311
BpmI CTGGAG 1 cut(s) 1455
Bpu10I CCTNAGC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 236, 279
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 52, 522, 757, 1420
BsaWI WCCGGW 1 cut(s) 1335
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 744
Bse118I RCCGGY 2 cut(s) 737, 1532
Bse1I ACTGG 1 cut(s) 1443
Bse3DI GCAATG 2 cut(s) 271, 795
BseAI TCCGGA 1 cut(s) 1335
BseBI CCWGG 3 cut(s) 53, 758, 1473
BseDI CCNNGG 4 cut(s) 52, 522, 757, 1420
BseGI GGATG 4 cut(s) 881, 1008, 1291, 1399
BseLI CCNNNNNNNGG 2 cut(s) 94, 744
BseMI GCAATG 2 cut(s) 271, 795
BseMII CTCAG 3 cut(s) 144, 320, 495
BseNI ACTGG 1 cut(s) 1443
BseSI GKGCMC 1 cut(s) 1514
BseXI GCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 6 cut(s) 197, 438, 464, 756, 811, 1455
BshNI GGYRCC 1 cut(s) 1475
BsiEI CGRYCG 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 1514
BsiHKCI CYCGRG 1 cut(s) 1579
BsiSI CCGG 4 cut(s) 465, 738, 1336, 1533
BslFI GGGAC 2 cut(s) 1181, 1589
BslI CCNNNNNNNGG 2 cut(s) 94, 744
BsmAI GTCTC 4 cut(s) 163, 360, 399, 1275
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 1181, 1589
BsmI GAATGC 2 cut(s) 637, 679
BsnI GGCC 6 cut(s) 197, 438, 464, 756, 811, 1455
Bso31I GGTCTC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 1579
Bsp1286I GDGCHC 1 cut(s) 1514
Bsp13I TCCGGA 1 cut(s) 1335
Bsp1407I TGTACA 1 cut(s) 1311
Bsp143I GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 2 cut(s) 94, 557
BspANI GGCC 6 cut(s) 197, 438, 464, 756, 811, 1455
BspCNI CTCAG 3 cut(s) 143, 319, 496
BspEI TCCGGA 1 cut(s) 1335
BspLI GGNNCC 4 cut(s) 1129, 1169, 1477, 1589
BspPI GGATC 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 1475
BspTI CTTAAG 1 cut(s) 1297
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 271, 795
BsrFI RCCGGY 2 cut(s) 737, 1532
BsrGI TGTACA 1 cut(s) 1311
BsrI ACTGG 1 cut(s) 1443
BssAI RCCGGY 2 cut(s) 737, 1532
BssECI CCNNGG 4 cut(s) 52, 522, 757, 1420
BssMI GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
BssNI GRCGYC 2 cut(s) 236, 279
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 53, 758, 1473
Bst4CI ACNGT 6 cut(s) 257, 348, 572, 818, 1261, 1520
Bst6I CTCTTC 1 cut(s) 148
BstACI GRCGYC 2 cut(s) 236, 279
BstAFI CTTAAG 1 cut(s) 1297
BstAUI TGTACA 1 cut(s) 1311
BstC8I GCNNGC 5 cut(s) 144, 179, 698, 1234, 1466
BstDEI CTNAG 5 cut(s) 130, 306, 504, 1043, 1502
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 4 cut(s) 881, 1008, 1291, 1399
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 7 cut(s) 273, 339, 553, 915, 952, 965, 1289
BstMAI GTCTC 4 cut(s) 163, 360, 399, 1275
BstMBI GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
BstMCI CGRYCG 1 cut(s) 915
BstMWI GCNNNNNNNGC 8 cut(s) 470, 554, 734, 776, 785, 842, 1181, 1461
BstNI CCWGG 3 cut(s) 53, 758, 1473
BstNSI RCATGY 5 cut(s) 397, 649, 700, 942, 1312
BstPAI GACNNNNGTC 1 cut(s) 1581
BstSCI CCNGG 3 cut(s) 51, 756, 1471
BstSFI CTRYAG 1 cut(s) 1646
BstSLI GKGCMC 1 cut(s) 1514
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 19, 1311
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuI GTATCC 1 cut(s) 1493
BsuRI GGCC 6 cut(s) 197, 438, 464, 756, 811, 1455
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 4 cut(s) 881, 1008, 1291, 1399
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 5 cut(s) 144, 179, 698, 1234, 1466
CaiI CAGNNNCTG 1 cut(s) 1115
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 2 cut(s) 737, 1532
Cfr13I GGNCC 3 cut(s) 436, 462, 1168
CseI GACGC 1 cut(s) 287
Csp6I GTAC 6 cut(s) 253, 866, 907, 985, 1312, 1476
CviQI GTAC 6 cut(s) 253, 866, 907, 985, 1312, 1476
DdeI CTNAG 5 cut(s) 130, 306, 504, 1043, 1502
DpnI GATC 7 cut(s) 272, 338, 552, 914, 951, 964, 1288
DpnII GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 2 cut(s) 195, 809
Eam1104I CTCTTC 1 cut(s) 148
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 522
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 1 cut(s) 1137
Eco88I CYCGRG 1 cut(s) 1579
EcoO109I RGGNCCY 1 cut(s) 1168
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 3 cut(s) 51, 756, 1471
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 399
FaqI GGGAC 2 cut(s) 1181, 1589
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 182, 558
FokI GGATG 4 cut(s) 888, 1015, 1278, 1406
Fsp4HI GCNGC 2 cut(s) 182, 558
FspBI CTAG 4 cut(s) 89, 956, 1076, 1205
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 1 cut(s) 444
GluI GCNGC 2 cut(s) 182, 558
GsuI CTGGAG 1 cut(s) 1455
HaeIII GGCC 6 cut(s) 197, 438, 464, 756, 811, 1455
HapII CCGG 4 cut(s) 465, 738, 1336, 1533
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 2 cut(s) 236, 279
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 3 cut(s) 49, 519, 643
HindII GTYRAC 3 cut(s) 49, 519, 643
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 7 cut(s) 136, 156, 226, 606, 1106, 1577, 1582
HpaII CCGG 4 cut(s) 465, 738, 1336, 1533
HphI GGTGA 5 cut(s) 538, 604, 910, 1390, 1423
Hpy166II GTNNAC 6 cut(s) 49, 519, 643, 723, 1264, 1512
Hpy188I TCNGA 4 cut(s) 309, 454, 1111, 1635
Hpy188III TCNNGA 8 cut(s) 218, 245, 342, 357, 691, 997, 1278, 1336
Hpy8I GTNNAC 6 cut(s) 49, 519, 643, 723, 1264, 1512
HpyAV CCTTC 4 cut(s) 449, 769, 866, 1547
HpyCH4III ACNGT 6 cut(s) 257, 348, 572, 818, 1261, 1520
HpyCH4IV ACGT 3 cut(s) 236, 408, 1389
HpyF10VI GCNNNNNNNGC 8 cut(s) 470, 554, 734, 776, 785, 842, 1181, 1461
HpyF3I CTNAG 5 cut(s) 130, 306, 504, 1043, 1502
HpySE526I ACGT 3 cut(s) 236, 408, 1389
Hsp92I GRCGYC 2 cut(s) 236, 279
HspAI GCGC 1 cut(s) 443
Kpn2I TCCGGA 1 cut(s) 1335
KpnI GGTACC 1 cut(s) 1479
Kzo9I GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
LmnI GCTCC 4 cut(s) 500, 693, 928, 1127
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 775, 993, 1371
MaeI CTAG 4 cut(s) 89, 956, 1076, 1205
MaeII ACGT 3 cut(s) 236, 408, 1389
MaeIII GTNAC 5 cut(s) 112, 237, 566, 1052, 1528
MalI GATC 7 cut(s) 272, 338, 552, 914, 951, 964, 1288
MboI GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
MboII GAAGA 9 cut(s) 24, 116, 165, 718, 944, 1105, 1130, 1206, 1316
MfeI CAATTG 1 cut(s) 1443
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 1 cut(s) 1514
MlsI TGGCCA 2 cut(s) 197, 811
MluCI AATT 5 cut(s) 421, 1101, 1347, 1443, 1539
MluNI TGGCCA 2 cut(s) 197, 811
MlyI GAGTC 3 cut(s) 165, 1571, 1591
MmeI TCCRAC 2 cut(s) 1170, 1613
Mox20I TGGCCA 2 cut(s) 197, 811
MroI TCCGGA 1 cut(s) 1335
MroXI GAANNNNTTC 1 cut(s) 1640
MscI TGGCCA 2 cut(s) 197, 811
MseI TTAA 8 cut(s) 167, 387, 1199, 1251, 1298, 1350, 1494, 1538
MslI CAYNNNNRTG 4 cut(s) 701, 896, 1373, 1379
Msp20I TGGCCA 2 cut(s) 197, 811
MspCI CTTAAG 1 cut(s) 1297
MspI CCGG 4 cut(s) 465, 738, 1336, 1533
MspR9I CCNGG 3 cut(s) 53, 758, 1473
MunI CAATTG 1 cut(s) 1443
Mva1269I GAATGC 2 cut(s) 637, 679
MvaI CCWGG 3 cut(s) 53, 758, 1473
MwoI GCNNNNNNNGC 8 cut(s) 470, 554, 734, 776, 785, 842, 1181, 1461
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 22
NdeII GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
NlaIV GGNNCC 4 cut(s) 1129, 1169, 1477, 1589
NmuCI GTSAC 2 cut(s) 112, 237
NsbI TGCGCA 1 cut(s) 444
NspI RCATGY 5 cut(s) 397, 649, 700, 942, 1312
PaeI GCATGC 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 1579
PciI ACATGT 4 cut(s) 393, 645, 938, 1308
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 2 cut(s) 637, 679
PdmI GAANNNNTTC 1 cut(s) 1640
PfeI GAWTC 4 cut(s) 136, 226, 606, 1106
PkrI GCNGC 2 cut(s) 183, 559
Ple19I CGATCG 1 cut(s) 915
PleI GAGTC 3 cut(s) 164, 1571, 1590
PpsI GAGTC 3 cut(s) 164, 1571, 1590
PpuMI RGGWCCY 1 cut(s) 1168
PscI ACATGT 4 cut(s) 393, 645, 938, 1308
PshAI GACNNNNGTC 1 cut(s) 1581
PshBI ATTAAT 1 cut(s) 1199
Psp5II RGGWCCY 1 cut(s) 1168
Psp6I CCWGG 3 cut(s) 51, 756, 1471
PspGI CCWGG 3 cut(s) 51, 756, 1471
PspN4I GGNNCC 4 cut(s) 1129, 1169, 1477, 1589
PspPI GGNCC 3 cut(s) 436, 462, 1168
PspPPI RGGWCCY 1 cut(s) 1168
PspXI VCTCGAGB 1 cut(s) 1579
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 1 cut(s) 949
PvuI CGATCG 1 cut(s) 915
RsaI GTAC 6 cut(s) 254, 867, 908, 986, 1313, 1477
RsaNI GTAC 6 cut(s) 253, 866, 907, 985, 1312, 1476
RseI CAYNNNNRTG 4 cut(s) 701, 896, 1373, 1379
SaqAI TTAA 8 cut(s) 167, 387, 1199, 1251, 1298, 1350, 1494, 1538
SatI GCNGC 2 cut(s) 182, 558
Sau3AI GATC 7 cut(s) 270, 336, 550, 912, 949, 962, 1286
Sau96I GGNCC 3 cut(s) 436, 462, 1168
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 3 cut(s) 165, 1571, 1591
ScrFI CCNGG 3 cut(s) 53, 758, 1473
SduI GDGCHC 1 cut(s) 1514
SfaNI GCATC 3 cut(s) 775, 993, 1371
SfcI CTRYAG 1 cut(s) 1646
Sfr274I CTCGAG 1 cut(s) 1579
SinI GGWCC 1 cut(s) 1168
SlaI CTCGAG 1 cut(s) 1579
SmiMI CAYNNNNRTG 4 cut(s) 701, 896, 1373, 1379
SmlI CTYRAG 2 cut(s) 1297, 1579
SmoI CTYRAG 2 cut(s) 1297, 1579
SphI GCATGC 1 cut(s) 700
Sse9I AATT 5 cut(s) 421, 1101, 1347, 1443, 1539
SsiI CCGC 2 cut(s) 94, 557
SspMI CTAG 4 cut(s) 89, 956, 1076, 1205
StyD4I CCNGG 3 cut(s) 51, 756, 1471
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 6 cut(s) 257, 348, 572, 818, 1261, 1520
TaiI ACGT 3 cut(s) 239, 411, 1392
TaqI TCGA 6 cut(s) 358, 398, 539, 609, 911, 1580
TaqII GACCGA 1 cut(s) 1412
TasI AATT 5 cut(s) 421, 1101, 1347, 1443, 1539
TatI WGTACW 4 cut(s) 252, 865, 906, 1311
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 4 cut(s) 136, 226, 606, 1106
Tru1I TTAA 8 cut(s) 167, 387, 1199, 1251, 1298, 1350, 1494, 1538
Tru9I TTAA 8 cut(s) 167, 387, 1199, 1251, 1298, 1350, 1494, 1538
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 2 cut(s) 112, 237
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 2 cut(s) 112, 237
TspDTI ATGAA 6 cut(s) 312, 611, 719, 982, 1038, 1410
TspRI CASTG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 1297
VneI GTGCAC 1 cut(s) 1510
VpaK11BI GGWCC 1 cut(s) 1168
VspI ATTAAT 1 cut(s) 1199
XapI RAATTY 1 cut(s) 421
XceI RCATGY 5 cut(s) 397, 649, 700, 942, 1312
XhoI CTCGAG 1 cut(s) 1579
XmnI GAANNNNTTC 1 cut(s) 1640
XspI CTAG 4 cut(s) 89, 956, 1076, 1205
ZraI GACGTC 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.