Rmu_co8282069.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282069.1
OG0018014
Physical Location & Seq
Reverse (-)
2 .. 818
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282069.1_g000001.1.cds

Sequence Viewer

Length: 817 bp
atggaaatagaaggtgttcgaccaaacagaatcacattcttgggtgccttgtatgcgtgtagtcatgcaggtttagtgcaagaagcatggaggattttcaacatgatggtgaataagtattcaataacaccaatgatggcgcactatacatgcatggtggatctcctagcaagatcagggtgtttcaacgaggcctatagcttcatcgagaggatgcctataaagccagacccaaagcttctcacagcatttctgagctcatgttgctctcacaagaatttagagctaggaaagactgttgggcagaaattgcttgaatcacaacctgaagaagcaggagcctatatgttgctatccaacttctatgggcttgtcggagacttgcaaggtgtggcaaaagtgagaagattgatgctagatagaggaataaggaaagaaaaggcaagcacttggattgagattaacaaaacagttcacagttttcaatcaggagacagatcccatcccctaagtaaagacatctacaactacttgcaacatctttttcagaagttgaaaattaacgggtacgttccaaacacaagcatggtaatgcaaaatgtggatgaacagacaaaggaggagatagttcttagtcatagcgagaaactggcaattggactaggcctaatcagcacacctccaggtacccgtatcattatagttaagaacctgagagtgtgcgcagactgtcatgtggtaactggcttaatttcaaagactgaagggagggagattgttgcaagggattcgagtcgattccatcatttcaaagatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

272

Amino Acids

30.7

Weight (kDa)

8.89

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018014)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39961
prunus_persica Prupe.6G045500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071981
rosa_laevigata RLG00000036268
rosa_multiflora Rmu_co8282069.1_g000001
rosa_roxburghii Rroxscaffold_1G00009160
rosa_rugosa Rorug05G0415900
rosa_samantha Rh5AG471900 Rh5BG491900 Rh5CG515700
rosa_wichuraiana Rw5G043870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 724
Acc36I ACCTGC 1 cut(s) 59
Acc65I GGTACC 1 cut(s) 686
AccB1I GGYRCC 2 cut(s) 44, 686
AclWI GGATC 2 cut(s) 168, 492
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 348, 783
AfaI GTAC 2 cut(s) 569, 688
AgsI TTSAA 8 cut(s) 100, 123, 187, 317, 485, 556, 756, 811
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 4 cut(s) 201, 238, 258, 286
AluI AGCT 4 cut(s) 201, 238, 258, 286
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 372, 486
AlwI GGATC 2 cut(s) 168, 492
AoxI GGCC 2 cut(s) 192, 664
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 686
AspLEI GCGC 2 cut(s) 142, 725
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 2 cut(s) 44, 686
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BccI CCATC 4 cut(s) 100, 130, 510, 810
BcgI CGANNNNNNTGC 2 cut(s) 771, 805
BciT130I CCWGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 372, 486
BfaI CTAG 4 cut(s) 167, 287, 416, 662
BfmI CTRYAG 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 684
BmiI GGNNCC 3 cut(s) 46, 340, 688
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 204, 402
BpmI CTGGAG 1 cut(s) 666
Bse1I ACTGG 2 cut(s) 654, 748
BseBI CCWGG 1 cut(s) 684
BseGI GGATG 3 cut(s) 219, 502, 610
BseMII CTCAG 2 cut(s) 245, 704
BseNI ACTGG 2 cut(s) 654, 748
BseRI GAGGAG 1 cut(s) 635
BshFI GGCC 2 cut(s) 194, 666
BshNI GGYRCC 2 cut(s) 44, 686
BsiHKAI GWGCWC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 372, 486
BsnI GGCC 2 cut(s) 194, 666
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 160, 173, 497
BspANI GGCC 2 cut(s) 194, 666
BspCNI CTCAG 2 cut(s) 246, 705
BspLI GGNNCC 3 cut(s) 46, 340, 688
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 168, 492
BspT107I GGYRCC 2 cut(s) 44, 686
BsrI ACTGG 2 cut(s) 654, 748
BssMI GATC 3 cut(s) 160, 173, 497
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 4 cut(s) 298, 472, 479, 731
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 4 cut(s) 254, 509, 632, 713
BstF5I GGATG 3 cut(s) 219, 502, 610
BstHHI GCGC 2 cut(s) 142, 725
BstKTI GATC 3 cut(s) 163, 176, 500
BstMAI GTCTC 2 cut(s) 372, 486
BstMBI GATC 3 cut(s) 160, 173, 497
BstMWI GCNNNNNNNGC 5 cut(s) 53, 223, 264, 310, 672
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 160, 497
BstYI RGATCY 2 cut(s) 160, 497
BsuRI GGCC 2 cut(s) 194, 666
BtsCI GGATG 3 cut(s) 219, 502, 610
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 2 cut(s) 142, 725
Csp6I GTAC 2 cut(s) 568, 687
CviAII CATG 8 cut(s) 65, 87, 103, 150, 154, 261, 586, 734
CviQI GTAC 2 cut(s) 568, 687
DdeI CTNAG 4 cut(s) 254, 509, 632, 713
DpnI GATC 3 cut(s) 162, 175, 499
DpnII GATC 3 cut(s) 160, 173, 497
Ecl136II GAGCTC 1 cut(s) 258
Eco147I AGGCCT 2 cut(s) 194, 666
Eco24I GRGCYC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 348, 783
EcoICRI GAGCTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 682
EcoT22I ATGCAT 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 8 cut(s) 68, 90, 106, 153, 157, 264, 589, 737
FatI CATG 8 cut(s) 64, 86, 102, 149, 153, 260, 585, 733
FokI GGATG 3 cut(s) 226, 489, 617
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 4 cut(s) 167, 287, 416, 662
FspI TGCGCA 1 cut(s) 724
GlaI GCGC 2 cut(s) 141, 724
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 194, 666
HhaI GCGC 2 cut(s) 142, 725
Hin1II CATG 8 cut(s) 68, 90, 106, 153, 157, 264, 589, 737
Hin6I GCGC 2 cut(s) 140, 723
HinP1I GCGC 2 cut(s) 140, 723
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 5 cut(s) 30, 317, 788, 793, 798
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 255, 377, 549
Hpy188III TCNNGA 2 cut(s) 208, 489
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 5, 758
HpyCH4III ACNGT 4 cut(s) 298, 472, 479, 731
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 7 cut(s) 68, 79, 153, 385, 535, 595, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 223, 264, 310, 672
HpyF3I CTNAG 4 cut(s) 254, 509, 632, 713
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 8 cut(s) 68, 90, 106, 153, 157, 264, 589, 737
HspAI GCGC 2 cut(s) 140, 723
KpnI GGTACC 1 cut(s) 690
Kzo9I GATC 3 cut(s) 160, 173, 497
LmnI GCTCC 1 cut(s) 338
LweI GCATC 2 cut(s) 204, 402
MaeI CTAG 4 cut(s) 167, 287, 416, 662
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 739
MalI GATC 3 cut(s) 162, 175, 499
MboI GATC 3 cut(s) 160, 173, 497
MboII GAAGA 2 cut(s) 341, 417
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 160, 497
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 5 cut(s) 277, 308, 558, 654, 750
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 2 cut(s) 355, 381
MnlI CCTC 7 cut(s) 84, 184, 204, 416, 613, 690, 762
Mph1103I ATGCAT 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 4 cut(s) 462, 561, 705, 749
MslI CAYNNNNRTG 3 cut(s) 107, 584, 590
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 5 cut(s) 53, 223, 264, 310, 672
NdeII GATC 3 cut(s) 160, 173, 497
NlaIII CATG 8 cut(s) 68, 90, 106, 153, 157, 264, 589, 737
NlaIV GGNNCC 3 cut(s) 46, 340, 688
NsbI TGCGCA 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 1 cut(s) 153
PceI AGGCCT 2 cut(s) 194, 666
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 4 cut(s) 30, 317, 788, 798
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 46, 340, 688
PsuI RGATCY 2 cut(s) 160, 497
RsaI GTAC 2 cut(s) 569, 688
RsaNI GTAC 2 cut(s) 568, 687
RseI CAYNNNNRTG 3 cut(s) 107, 584, 590
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 4 cut(s) 462, 561, 705, 749
Sau3AI GATC 3 cut(s) 160, 173, 497
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 2 cut(s) 204, 402
SfcI CTRYAG 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 107, 584, 590
Sse9I AATT 5 cut(s) 277, 308, 558, 654, 750
SseBI AGGCCT 2 cut(s) 194, 666
SspMI CTAG 4 cut(s) 167, 287, 416, 662
SstI GAGCTC 1 cut(s) 260
StuI AGGCCT 2 cut(s) 194, 666
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 4 cut(s) 298, 472, 479, 731
TaiI ACGT 1 cut(s) 573
TaqI TCGA 4 cut(s) 19, 207, 791, 796
TasI AATT 5 cut(s) 277, 308, 558, 654, 750
TfiI GAWTC 4 cut(s) 30, 317, 788, 798
Tru1I TTAA 4 cut(s) 462, 561, 705, 749
Tru9I TTAA 4 cut(s) 462, 561, 705, 749
TspDTI ATGAA 2 cut(s) 193, 621
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 4 cut(s) 167, 287, 416, 662
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.