Prupe.6G045500_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018014
Physical Location & Seq
Forward (+)
3294612 .. 3297379
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G045500.1

Sequence Viewer

Length: 1638 bp
ATGATGCGTAGAACTTTATCAAATGCCAAGACAATCACTAAACTTATACACCAGGGGCAAAGTCGTCAAGCAATAGTTTTGTTTCATCGAGTCCTGAAAAACGGGTTCAAAATCACAGAGTTTCTTCTCTCAGCAATTGTGCGAGCTTGTGGAAGAGTTGCTGCCATTAAAGAAGGCAAGCAATTTCATTGCACGGCGATCAAACATGGGTTCAATAGAGACATGATTCTAATGACGTCCCTTCTTGACATGTACTCTAAATGCAACAATATCACAGAAGCTCGGCTTGTATTTGATGAAATGCCTCAAAGAGATGTCATTGCCACCAACAGCATGATTTCTGGGTTGTGTTGGTCTCACTTAACACTGGAAGCAATTGAATTGTTTAGTAACATGTCAAGAAGAGACGCCGGGTCTTGGAATTCGTTGATTTCGGGTCTCGGTCATAACTCTGAAGGAAGAACAGGATTGGTTTTCTTTGAGAAAATGAGATTGGAGGGAGCTGAAGTTGATGTTATGACCATGGTTAGTGTTCTTTCAATCTGCTCCGATCTTGCAGCATTGAGTAATGGTAAACAATGTCATGGTTTGGTGATTAAGTATGGATTTGAGTTGGGGTATTTACCAGTTGGAAATGCTATTATTGACATGTATGCTAAATGTGGGTGCATGGAAGATGCCTGCTTATGTTTCAAAAACATGCCTTTAAAAAATGTAATTTCATGGACTGCTTTGATCACGGGTTATGGAAAACAAGGCCGGGGCTTAGAAGCTTTGGAGGCATTTGACACAATGGAAGTGGAAGGTGTTGCACCAAACAAAATCACATTCTTGGGTGCCTTGTATGCCTGTAGTCATGCTGGATTAGTACAAGAAGGATGGAGGGTTTTCAACACCATGGTACATAAGTACTCAATCGCACCCATGATGGAGCATTATACATGCATGGTGGATCTCCTAGTACGATCGAAGTGTTTCAGTGAGGCCTATAAGTTCATAGAGAGGATGCCTGTAAAGCCGGACACAAGGCTTCTCACAGCATTTTTAAGCTCATGCTGCTCCCACAAGAATTTGGAGCTAGCAAGGAGTGTTGGGAAGAAATTACTTGAATCAGCACCTGAAGAAGCAGGGGCCTATATGTTACTATCCAACTTCTATGGGCTTGTTGGGGACTTACAAGGTGTGGCAAAAGTGAGAAGATTGATGCTAGATAGAGGAATAAGAAAAGAGAAGGCATGTACCTGGATTGAGATTAACAAAACAGTTCACAGCTTTCAATCCGGAGACAGATCCCATCCCCTAAGCAATGAGATCTACAACTATTTACAACATCTATTTAAAAAGTTGAAAGCTAATGGGTATGTGCCAGACACAAGCATGGTCATGCAGAATGTGGATGAACAAACAAAGGAGGAGATAGTTCTTGGTCACAGTGAGAAACTGGCAATTGGTCTTGGCCTAATCAGCACACCTCCCGGTACCCGTATTGTTATAGTTAAGAATCTGAGAGTGTGTGTAGACTGTCATGTGGTAACTGGTCTAATTTCAAAGATTGAAGGGAGGGAGATTGTTGCTAGGGACTCAAACCGATTTCATCATTTCAAAGATGGACTATGCTCTTGTGAAAATCATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

546

Amino Acids

60.97

Weight (kDa)

8.7

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018014)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39961
prunus_persica Prupe.6G045500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071981
rosa_laevigata RLG00000036268
rosa_multiflora Rmu_co8282069.1_g000001
rosa_roxburghii Rroxscaffold_1G00009160
rosa_rugosa Rorug05G0415900
rosa_samantha Rh5AG471900 Rh5BG491900 Rh5CG515700
rosa_wichuraiana Rw5G043870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 239
Acc65I GGTACC 1 cut(s) 1478
AccB1I GGYRCC 2 cut(s) 836, 1478
AccI GTMKAC 1 cut(s) 1518
AccIII TCCGGA 1 cut(s) 1280
AclWI GGATC 2 cut(s) 960, 1284
AcsI RAATTY 2 cut(s) 421, 1069
AcuI CTGAAG 3 cut(s) 474, 525, 1140
AcyI GRCGYC 2 cut(s) 236, 408
AfaI GTAC 7 cut(s) 254, 870, 903, 911, 963, 1240, 1480
AfiI CCNNNNNNNGG 1 cut(s) 417
AflIII ACRYGT 3 cut(s) 249, 393, 648
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 2 cut(s) 51, 1241
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 8 cut(s) 146, 281, 503, 773, 1050, 1078, 1272, 1352
AluI AGCT 8 cut(s) 146, 281, 503, 773, 1050, 1078, 1272, 1352
Alw26I GTCTC 5 cut(s) 213, 360, 399, 443, 1278
AlwI GGATC 2 cut(s) 960, 1284
AlwNI CAGNNNCTG 1 cut(s) 1118
Aor13HI TCCGGA 1 cut(s) 1280
AoxI GGCC 4 cut(s) 757, 984, 1131, 1456
ApeKI GCWGC 3 cut(s) 161, 557, 1056
ApoI RAATTY 2 cut(s) 421, 1069
Asp700I GAANNNNTTC 1 cut(s) 974
Asp718I GGTACC 1 cut(s) 1478
AspS9I GGNCC 1 cut(s) 1131
AsuC2I CCSGG 3 cut(s) 412, 761, 1476
AsuHPI GGTGA 1 cut(s) 604
AsuNHI GCTAGC 1 cut(s) 1078
BaeI ACNNNNGTAYC 2 cut(s) 893, 926
BanI GGYRCC 2 cut(s) 836, 1478
BbvI GCAGC 3 cut(s) 148, 569, 1043
BccI CCATC 4 cut(s) 873, 922, 1302, 1601
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 2 cut(s) 53, 1243
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 3 cut(s) 412, 761, 1476
BcoDI GTCTC 5 cut(s) 213, 360, 399, 443, 1278
BfaI CTAG 4 cut(s) 959, 1079, 1208, 1575
BfmI CTRYAG 1 cut(s) 850
BglII AGATCT 1 cut(s) 1311
BisI GCNGC 3 cut(s) 162, 558, 1057
BlsI GCNGC 3 cut(s) 163, 559, 1058
BmcAI AGTACT 1 cut(s) 911
Bme1390I CCNGG 5 cut(s) 53, 412, 761, 1243, 1476
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 1131
BmiI GGNNCC 3 cut(s) 838, 1132, 1480
BmrFI CCNGG 5 cut(s) 53, 412, 761, 1243, 1476
BmsI GCATC 3 cut(s) 667, 996, 1194
BmtI GCTAGC 1 cut(s) 1082
Bpu10I CCTNAGC 1 cut(s) 1301
BpuMI CCSGG 3 cut(s) 412, 761, 1476
BsaHI GRCGYC 2 cut(s) 236, 408
BsaI GGTCTC 2 cut(s) 360, 443
BsaJI CCNNGG 4 cut(s) 52, 522, 760, 897
BsaWI WCCGGW 1 cut(s) 1280
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 4 cut(s) 372, 626, 1446, 1540
Bse3DI GCAATG 3 cut(s) 187, 318, 1312
BseAI TCCGGA 1 cut(s) 1280
BseBI CCWGG 2 cut(s) 53, 1243
BseDI CCNNGG 4 cut(s) 52, 522, 760, 897
BseGI GGATG 4 cut(s) 884, 1011, 1294, 1402
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 3 cut(s) 187, 318, 1312
BseMII CTCAG 2 cut(s) 144, 1496
BseNI ACTGG 4 cut(s) 372, 626, 1446, 1540
BseRI GAGGAG 1 cut(s) 1427
BseXI GCAGC 3 cut(s) 148, 569, 1043
Bsh1285I CGRYCG 1 cut(s) 968
BshFI GGCC 4 cut(s) 759, 986, 1133, 1458
BshNI GGYRCC 2 cut(s) 836, 1478
BsiEI CGRYCG 1 cut(s) 968
BsiSI CCGG 5 cut(s) 411, 760, 1019, 1281, 1476
BslFI GGGAC 3 cut(s) 223, 1184, 1592
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 5 cut(s) 213, 360, 399, 443, 1278
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 3 cut(s) 223, 1184, 1592
BsnI GGCC 4 cut(s) 759, 986, 1133, 1458
Bso31I GGTCTC 2 cut(s) 360, 443
Bsp13I TCCGGA 1 cut(s) 1280
Bsp143I GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
Bsp19I CCATGG 2 cut(s) 522, 897
BspANI GGCC 4 cut(s) 759, 986, 1133, 1458
BspCNI CTCAG 2 cut(s) 143, 1497
BspEI TCCGGA 1 cut(s) 1280
BspLI GGNNCC 3 cut(s) 838, 1132, 1480
BspOI GCTAGC 1 cut(s) 1082
BspPI GGATC 2 cut(s) 960, 1284
BspT107I GGYRCC 2 cut(s) 836, 1478
BspTNI GGTCTC 2 cut(s) 360, 443
BsrDI GCAATG 3 cut(s) 187, 318, 1312
BsrI ACTGG 4 cut(s) 372, 626, 1446, 1540
BssECI CCNNGG 4 cut(s) 52, 522, 760, 897
BssMI GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
BssNI GRCGYC 2 cut(s) 236, 408
BssT1I CCWWGG 2 cut(s) 522, 897
Bst2UI CCWGG 2 cut(s) 53, 1243
Bst4CI ACNGT 3 cut(s) 1264, 1433, 1523
Bst6I CTCTTC 2 cut(s) 148, 397
BstACI GRCGYC 2 cut(s) 236, 408
BstC8I GCNNGC 4 cut(s) 144, 179, 682, 1080
BstDEI CTNAG 4 cut(s) 130, 766, 1301, 1505
BstDSI CCRYGG 2 cut(s) 522, 897
BstF5I GGATG 4 cut(s) 884, 1011, 1294, 1402
BstKTI GATC 7 cut(s) 201, 553, 738, 955, 968, 1292, 1314
BstMAI GTCTC 5 cut(s) 213, 360, 399, 443, 1278
BstMBI GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
BstMCI CGRYCG 1 cut(s) 968
BstMWI GCNNNNNNNGC 5 cut(s) 779, 845, 1015, 1056, 1464
BstNI CCWGG 2 cut(s) 53, 1243
BstNSI RCATGY 6 cut(s) 253, 397, 652, 703, 945, 1239
BstSCI CCNGG 5 cut(s) 51, 410, 759, 1241, 1474
BstSFI CTRYAG 1 cut(s) 850
BstV1I GCAGC 3 cut(s) 148, 569, 1043
BstX2I RGATCY 3 cut(s) 952, 1289, 1311
BstYI RGATCY 3 cut(s) 952, 1289, 1311
BsuRI GGCC 4 cut(s) 759, 986, 1133, 1458
BtgI CCRYGG 2 cut(s) 522, 897
BtsCI GGATG 4 cut(s) 884, 1011, 1294, 1402
BtsIMutI CAGTG 3 cut(s) 365, 985, 1438
Cac8I GCNNGC 4 cut(s) 144, 179, 682, 1080
CaiI CAGNNNCTG 1 cut(s) 1118
Cfr13I GGNCC 1 cut(s) 1131
CseI GACGC 1 cut(s) 416
Csp6I GTAC 7 cut(s) 253, 869, 902, 910, 962, 1239, 1479
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviQI GTAC 7 cut(s) 253, 869, 902, 910, 962, 1239, 1479
DdeI CTNAG 4 cut(s) 130, 766, 1301, 1505
DpnI GATC 7 cut(s) 200, 552, 737, 954, 967, 1291, 1313
DpnII GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
DraI TTTAAA 2 cut(s) 708, 1339
DriI GACNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 148, 397
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 2 cut(s) 148, 397
Eco130I CCWWGG 2 cut(s) 522, 897
Eco147I AGGCCT 1 cut(s) 986
Eco31I GGTCTC 2 cut(s) 360, 443
Eco57I CTGAAG 3 cut(s) 474, 525, 1140
EcoO109I RGGNCCY 1 cut(s) 1131
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 51, 1241
EcoT14I CCWWGG 2 cut(s) 522, 897
EcoT22I ATGCAT 1 cut(s) 947
ErhI CCWWGG 2 cut(s) 522, 897
Esp3I CGTCTC 1 cut(s) 399
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 3 cut(s) 223, 1184, 1592
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 1 cut(s) 1518
Fnu4HI GCNGC 3 cut(s) 162, 558, 1057
FokI GGATG 4 cut(s) 891, 1018, 1281, 1409
Fsp4HI GCNGC 3 cut(s) 162, 558, 1057
FspBI CTAG 4 cut(s) 959, 1079, 1208, 1575
GluI GCNGC 3 cut(s) 162, 558, 1057
HaeIII GGCC 4 cut(s) 759, 986, 1133, 1458
HapII CCGG 5 cut(s) 411, 760, 1019, 1281, 1476
HgaI GACGC 1 cut(s) 416
Hin1I GRCGYC 2 cut(s) 236, 408
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 5 cut(s) 90, 226, 1109, 1501, 1580
HpaII CCGG 5 cut(s) 411, 760, 1019, 1281, 1476
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 3 cut(s) 575, 1267, 1519
Hpy188I TCNGA 3 cut(s) 454, 550, 1506
Hpy188III TCNNGA 4 cut(s) 94, 245, 399, 1281
Hpy8I GTNNAC 3 cut(s) 575, 1267, 1519
HpyAV CCTTC 7 cut(s) 167, 251, 449, 797, 869, 1225, 1550
HpyCH4III ACNGT 3 cut(s) 1264, 1433, 1523
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 7 cut(s) 192, 264, 557, 669, 812, 945, 1387
HpyF10VI GCNNNNNNNGC 5 cut(s) 779, 845, 1015, 1056, 1464
HpyF3I CTNAG 4 cut(s) 130, 766, 1301, 1505
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 2 cut(s) 236, 408
Kpn2I TCCGGA 1 cut(s) 1280
KpnI GGTACC 1 cut(s) 1482
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
LmnI GCTCC 5 cut(s) 500, 551, 931, 1064, 1075
Lsp1109I GCAGC 3 cut(s) 148, 569, 1043
LweI GCATC 3 cut(s) 667, 996, 1194
MaeI CTAG 4 cut(s) 959, 1079, 1208, 1575
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 4 cut(s) 389, 1140, 1427, 1531
MalI GATC 7 cut(s) 200, 552, 737, 954, 967, 1291, 1313
MboI GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
MboII GAAGA 8 cut(s) 116, 165, 414, 471, 686, 1108, 1133, 1209
MfeI CAATTG 3 cut(s) 135, 375, 1446
MflI RGATCY 3 cut(s) 952, 1289, 1311
MlyI GAGTC 2 cut(s) 99, 1574
MmeI TCCRAC 2 cut(s) 610, 1173
Mph1103I ATGCAT 1 cut(s) 947
MroI TCCGGA 1 cut(s) 1280
MroXI GAANNNNTTC 1 cut(s) 974
MseI TTAA 8 cut(s) 168, 362, 597, 707, 1046, 1254, 1338, 1497
MslI CAYNNNNRTG 2 cut(s) 1376, 1382
MspI CCGG 5 cut(s) 411, 760, 1019, 1281, 1476
MspR9I CCNGG 5 cut(s) 53, 412, 761, 1243, 1476
MunI CAATTG 3 cut(s) 135, 375, 1446
MvaI CCWGG 2 cut(s) 53, 1243
MwoI GCNNNNNNNGC 5 cut(s) 779, 845, 1015, 1056, 1464
NciI CCSGG 3 cut(s) 412, 761, 1476
NcoI CCATGG 2 cut(s) 522, 897
NdeII GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
NheI GCTAGC 1 cut(s) 1078
NlaIV GGNNCC 3 cut(s) 838, 1132, 1480
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 1427
NsiI ATGCAT 1 cut(s) 947
NspI RCATGY 6 cut(s) 253, 397, 652, 703, 945, 1239
PceI AGGCCT 1 cut(s) 986
PciI ACATGT 3 cut(s) 249, 393, 648
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 3 cut(s) 226, 1109, 1501
PkrI GCNGC 3 cut(s) 163, 559, 1058
Ple19I CGATCG 1 cut(s) 968
PleI GAGTC 2 cut(s) 98, 1574
PpsI GAGTC 2 cut(s) 98, 1574
PscI ACATGT 3 cut(s) 249, 393, 648
Psp6I CCWGG 2 cut(s) 51, 1241
PspGI CCWGG 2 cut(s) 51, 1241
PspN4I GGNNCC 3 cut(s) 838, 1132, 1480
PspPI GGNCC 1 cut(s) 1131
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 3 cut(s) 952, 1289, 1311
PvuI CGATCG 1 cut(s) 968
RsaI GTAC 7 cut(s) 254, 870, 903, 911, 963, 1240, 1480
RsaNI GTAC 7 cut(s) 253, 869, 902, 910, 962, 1239, 1479
RseI CAYNNNNRTG 2 cut(s) 1376, 1382
SaqAI TTAA 8 cut(s) 168, 362, 597, 707, 1046, 1254, 1338, 1497
SatI GCNGC 3 cut(s) 162, 558, 1057
Sau3AI GATC 7 cut(s) 198, 550, 735, 952, 965, 1289, 1311
Sau96I GGNCC 1 cut(s) 1131
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 2 cut(s) 99, 1574
ScrFI CCNGG 5 cut(s) 53, 412, 761, 1243, 1476
SfaNI GCATC 3 cut(s) 667, 996, 1194
SfcI CTRYAG 1 cut(s) 850
SmiMI CAYNNNNRTG 2 cut(s) 1376, 1382
SseBI AGGCCT 1 cut(s) 986
SspMI CTAG 4 cut(s) 959, 1079, 1208, 1575
StuI AGGCCT 1 cut(s) 986
StyD4I CCNGG 5 cut(s) 51, 410, 759, 1241, 1474
StyI CCWWGG 2 cut(s) 522, 897
TaaI ACNGT 3 cut(s) 1264, 1433, 1523
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 88, 968
TaqII GACCGA 1 cut(s) 431
TatI WGTACW 3 cut(s) 252, 868, 909
TfiI GAWTC 3 cut(s) 226, 1109, 1501
Tru1I TTAA 8 cut(s) 168, 362, 597, 707, 1046, 1254, 1338, 1497
Tru9I TTAA 8 cut(s) 168, 362, 597, 707, 1046, 1254, 1338, 1497
TscAI CASTG 3 cut(s) 372, 985, 1438
TseFI GTSAC 1 cut(s) 1427
TseI GCWGC 3 cut(s) 161, 557, 1056
Tsp45I GTSAC 1 cut(s) 1427
TspDTI ATGAA 7 cut(s) 74, 176, 312, 711, 985, 1413, 1583
TspRI CASTG 3 cut(s) 372, 985, 1438
XapI RAATTY 2 cut(s) 421, 1069
XceI RCATGY 6 cut(s) 253, 397, 652, 703, 945, 1239
XmiI GTMKAC 1 cut(s) 1518
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 4 cut(s) 959, 1079, 1208, 1575
ZraI GACGTC 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 911
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.