RLG00000036268

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018014
Physical Location & Seq
Reverse (-)
78224127 .. 78225026
900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036268

Sequence Viewer

Length: 792 bp
ATGCTCCATAGAAGTTTATCATATGCCAAGACGATCAGTAATCTTGTAAACCAAGGGCAAAATTGTCAAGCAATAGCTCTGTTTCGCCGAGTGCGGGAAAATGGGTTTGAAGTCACAGGGTTTCTTCTCTCAGCAACTTTGCGAGCTTGTGGAAGAGTTGCTGCAATAAAAGAAGGCAAGCAGCTTCATGGCATGGCGATCAAACATGGGTTCAATCGGGACACGATTCTAATGACGTTGTGTTGGTCTCACTTAACAATGGAAGCGATTGAATTGTTTAATAACATATTGGAAAGAGACGTTGGGTCTTGGAATTCGCTGATTTCGGGTCTTAGGCATAACTCGGAAGGAAGGACCGGGTTGGCTTTCTTTGAGAAAATGAGATTGGAGGGAGCTGATGTTGATGTTATGACCATGGTAAGTGTTCTTTCAATTTTTTCTGATCTTGCAGAGTTGCGTAACGGTAAACAAGTACATTGTTTAGTGATGAAGTATGGATTCGAGTTGTATTTGTCGGTTGGGAATGCTGTTATTGACATGTATGCTAAATGTGGGTGCATGGAAGATGCTTTTGTATGTTTCAGGAACATGCCTTTGAAGAATGTAGTTTCATGGACTGCTTTGATTGTGGGTTTTGGGAAACAAGGCCAGGGAATAGAAGCTTTGAAGGCGTTTGATGCAATGGAAATAGAAGGTGTTCGACCAAACAGAATCACATTCTTGGGTGCCTTGTATGTGTGTAGCCATGCAGGTTTAGTACAAGAAGCATGGAGGATTTTCAACATGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

264

Amino Acids

29.44

Weight (kDa)

8.42

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 200 - 240 2.7e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018014)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39961
prunus_persica Prupe.6G045500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071981
rosa_laevigata RLG00000036268
rosa_multiflora Rmu_co8282069.1_g000001
rosa_roxburghii Rroxscaffold_1G00009160
rosa_rugosa Rorug05G0415900
rosa_samantha Rh5AG471900 Rh5BG491900 Rh5CG515700
rosa_wichuraiana Rw5G043870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 725
AciI CCGC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 2 cut(s) 474, 759
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 2 cut(s) 537, 783
AgsI TTSAA 7 cut(s) 110, 214, 272, 432, 598, 667, 781
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 648
AjuI GAANNNNNNNTTGG 4 cut(s) 285, 317, 368, 400
AluBI AGCT 5 cut(s) 77, 146, 184, 395, 662
AluI AGCT 5 cut(s) 77, 146, 184, 395, 662
Alw26I GTCTC 2 cut(s) 252, 291
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 2 cut(s) 161, 181
ApoI RAATTY 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 358
AvaII GGWCC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 148, 193
BciT130I CCWGG 1 cut(s) 650
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 252, 291
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 2 cut(s) 162, 182
BlsI GCNGC 2 cut(s) 163, 183
Bme1390I CCNGG 2 cut(s) 358, 650
Bme18I GGWCC 1 cut(s) 354
BmeRI GACNNNNNGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 727
BmrFI CCNGG 2 cut(s) 358, 650
BmsI GCATC 2 cut(s) 556, 667
BpuMI CCSGG 1 cut(s) 358
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 52, 414, 649
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 3 cut(s) 52, 414, 649
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 148, 193
BshFI GGCC 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 725
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 252, 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 648
Bso31I GGTCTC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 33, 198, 442
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 740
BspT107I GGYRCC 1 cut(s) 725
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 687
BssECI CCNNGG 3 cut(s) 52, 414, 649
BssMI GATC 3 cut(s) 33, 198, 442
BssT1I CCWWGG 2 cut(s) 52, 414
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 144, 179
BstDEI CTNAG 2 cut(s) 130, 332
BstDSI CCRYGG 1 cut(s) 414
BstKTI GATC 3 cut(s) 36, 201, 445
BstMAI GTCTC 2 cut(s) 252, 291
BstMBI GATC 3 cut(s) 33, 198, 442
BstMWI GCNNNNNNNGC 2 cut(s) 668, 677
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 3 cut(s) 541, 592, 787
BstSCI CCNGG 2 cut(s) 356, 648
BstV1I GCAGC 2 cut(s) 148, 193
BsuRI GGCC 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 414
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 144, 179
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 2 cut(s) 473, 758
CviJI RGCY 8 cut(s) 77, 146, 184, 365, 395, 648, 662, 744
CviKI_1 RGCY 8 cut(s) 77, 146, 184, 365, 395, 648, 662, 744
CviQI GTAC 2 cut(s) 473, 758
DdeI CTNAG 2 cut(s) 130, 332
DpnI GATC 3 cut(s) 35, 200, 444
DpnII GATC 3 cut(s) 33, 198, 442
DriI GACNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 148
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 52, 414
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 52, 414
ErhI CCWWGG 2 cut(s) 52, 414
Esp3I CGTCTC 1 cut(s) 291
FaqI GGGAC 1 cut(s) 233
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 162, 182
Fsp4HI GCNGC 2 cut(s) 162, 182
GluI GCNGC 2 cut(s) 162, 182
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 3 cut(s) 226, 498, 711
HpaII CCGG 1 cut(s) 357
Hpy166II GTNNAC 2 cut(s) 49, 467
Hpy188I TCNGA 2 cut(s) 346, 442
Hpy188III TCNNGA 2 cut(s) 218, 583
Hpy8I GTNNAC 2 cut(s) 49, 467
HpyAV CCTTC 5 cut(s) 167, 341, 345, 661, 686
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 236, 300
HpyCH4V TGCA 5 cut(s) 164, 449, 558, 680, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 677
HpyF3I CTNAG 2 cut(s) 130, 332
HpySE526I ACGT 2 cut(s) 236, 300
Kzo9I GATC 3 cut(s) 33, 198, 442
LmnI GCTCC 2 cut(s) 9, 392
LpnPI CCDG 6 cut(s) 102, 370, 568, 635, 662, 735
Lsp1109I GCAGC 2 cut(s) 148, 193
LweI GCATC 2 cut(s) 556, 667
MaeII ACGT 2 cut(s) 236, 300
MaeIII GTNAC 2 cut(s) 112, 458
MalI GATC 3 cut(s) 35, 200, 444
MboI GATC 3 cut(s) 33, 198, 442
MboII GAAGA 4 cut(s) 116, 165, 575, 610
MluCI AATT 4 cut(s) 61, 272, 313, 432
MnlI CCTC 2 cut(s) 382, 765
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 2 cut(s) 254, 279
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 358, 650
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 2 cut(s) 668, 677
NciI CCSGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 1 cut(s) 22
NdeII GATC 3 cut(s) 33, 198, 442
NlaIV GGNNCC 1 cut(s) 727
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 3 cut(s) 541, 592, 787
PciI ACATGT 2 cut(s) 537, 783
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 226, 498, 711
PkrI GCNGC 2 cut(s) 163, 183
PscI ACATGT 2 cut(s) 537, 783
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 727
PspPI GGNCC 1 cut(s) 354
RsaI GTAC 2 cut(s) 474, 759
RsaNI GTAC 2 cut(s) 473, 758
SaqAI TTAA 2 cut(s) 254, 279
SatI GCNGC 2 cut(s) 162, 182
Sau3AI GATC 3 cut(s) 33, 198, 442
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 358, 650
SetI ASST 9 cut(s) 79, 148, 186, 239, 303, 397, 664, 697, 754
SfaNI GCATC 2 cut(s) 556, 667
SinI GGWCC 1 cut(s) 354
Sse9I AATT 4 cut(s) 61, 272, 313, 432
SsiI CCGC 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 356, 648
StyI CCWWGG 2 cut(s) 52, 414
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 239, 303
TaqI TCGA 2 cut(s) 501, 700
TasI AATT 4 cut(s) 61, 272, 313, 432
TatI WGTACW 2 cut(s) 472, 757
TfiI GAWTC 3 cut(s) 226, 498, 711
Tru1I TTAA 2 cut(s) 254, 279
Tru9I TTAA 2 cut(s) 254, 279
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 161, 181
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 176, 503, 600
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 1 cut(s) 313
XceI RCATGY 3 cut(s) 541, 592, 787
XmnI GAANNNNTTC 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.