FvH4_3g40790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017636
Physical Location & Seq
Forward (+)
34344379 .. 34345427
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40790.t1

Sequence Viewer

Length: 507 bp
ATGAGGACTGGTTACTTGGTTTGTTTGTCTTTGGGAATTTGCCTTCTACTTCAAGTTCATCATGCTCATGCCAAAGAAAATAAAACAGACCCGACGGACAATGTAAATCTAAGTCCATTCCAGGCTTGGAGAAGTGCTTATTACTGCTTGCAGAAAAAAGCCCCTGGTAATTGCACAGCACTTGAGACGGTTTCGCTGACAGAGAAAGGACTATTGGATGTGATCCCAAGTGAGATAGGAGAATACTGCAGTGCAGCCTCAGGATGTGCACAACACGTCTTGGATGTGCTTAAGTGCGTCCACCTTTGCAAAAGAGACTTCTGGTTCGCCAACAACGCCACTGTTTCAGTGCTTAATCAAACCATTCATGATGGATGCTCTAAAAATCAAAGTATTTCGACACTGAGTTGGAAAAAGAGCAGTGGGATGAAGGTGCAGCAGAAGATGTATATACCATTTGTTGCATCACTATCAACCTTGGCCTTCATAGCCATCTTCAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.53

Weight (kDa)

8.57

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 39 - 135 9e-24 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40790
malus_domestica MD11G1052300.v1.1
prunus_persica Prupe.6G039900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073511
rosa_laevigata RLG00000036389
rosa_roxburghii Rroxscaffold_1G00007760
rosa_rugosa Rorug05G0424100
rosa_samantha Rh5AG481400 Rh5BG502100 Rh5CG525300 Rh5DG514300
rosa_wichuraiana Rw5G044720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 36
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 274, 501
AgsI TTSAA 2 cut(s) 53, 499
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 2 cut(s) 120, 163
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 179, 309
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 217
AoxI GGCC 1 cut(s) 480
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 254, 436
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AxyI CCTNAGG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 266, 448
BccI CCATC 2 cut(s) 365, 500
BciT130I CCWGG 2 cut(s) 122, 165
BcoDI GTCTC 2 cut(s) 179, 309
BfmI CTRYAG 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 255, 437
BlsI GCNGC 2 cut(s) 256, 438
Bme1390I CCNGG 2 cut(s) 122, 165
BmgBI CACGTC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 122, 165
BmsI GCATC 2 cut(s) 365, 473
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 163, 477
Bse1I ACTGG 1 cut(s) 13
Bse21I CCTNAGG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 122, 165
BseDI CCNNGG 2 cut(s) 163, 477
BseGI GGATG 5 cut(s) 223, 269, 289, 380, 432
BseMII CTCAG 2 cut(s) 273, 395
BseNI ACTGG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 2 cut(s) 266, 448
BsgI GTGCAG 2 cut(s) 273, 455
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 179, 309
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 222
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 2 cut(s) 272, 396
BspHI TCATGA 1 cut(s) 367
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 163, 477
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 122, 165
Bst4CI ACNGT 2 cut(s) 190, 343
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 110, 259, 404
BstF5I GGATG 5 cut(s) 223, 269, 289, 380, 432
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 179, 309
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 335, 488
BstNI CCWGG 2 cut(s) 122, 165
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 120, 163
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 266, 448
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 1 cut(s) 482
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 5 cut(s) 223, 269, 289, 380, 432
BtsI GCAGTG 2 cut(s) 256, 427
BtsIMutI CAGTG 5 cut(s) 256, 339, 354, 401, 427
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 1 cut(s) 367
CseI GACGC 1 cut(s) 286
CviAII CATG 4 cut(s) 62, 68, 368, 502
CviJI RGCY 5 cut(s) 125, 161, 257, 482, 491
CviKI_1 RGCY 5 cut(s) 125, 161, 257, 482, 491
DdeI CTNAG 3 cut(s) 110, 259, 404
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 477
Eco81I CCTNAGG 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 120, 163
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 65, 71, 371, 505
FaiI YATR 7 cut(s) 63, 69, 369, 450, 452, 488, 503
FatI CATG 4 cut(s) 61, 67, 367, 501
Fnu4HI GCNGC 2 cut(s) 255, 437
FokI GGATG 5 cut(s) 230, 276, 296, 387, 439
Fsp4HI GCNGC 2 cut(s) 255, 437
GluI GCNGC 2 cut(s) 255, 437
HaeIII GGCC 1 cut(s) 482
HgaI GACGC 1 cut(s) 286
Hin1II CATG 4 cut(s) 65, 71, 371, 505
Hpy166II GTNNAC 2 cut(s) 269, 301
Hpy188III TCNNGA 2 cut(s) 261, 368
Hpy8I GTNNAC 2 cut(s) 269, 301
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 53, 424, 493
HpyCH4III ACNGT 2 cut(s) 190, 343
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 8 cut(s) 151, 174, 249, 254, 269, 309, 436, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 488
HpyF3I CTNAG 3 cut(s) 110, 259, 404
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 65, 71, 371, 505
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 6 cut(s) 107, 134, 150, 177, 246, 307
Lsp1109I GCAGC 2 cut(s) 266, 448
LweI GCATC 2 cut(s) 365, 473
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 2 cut(s) 454, 487
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 36, 169
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 1 cut(s) 268
MseI TTAA 2 cut(s) 291, 354
MslI CAYNNNNRTG 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 122, 165
MvaI CCWGG 2 cut(s) 122, 165
MwoI GCNNNNNNNGC 2 cut(s) 335, 488
NdeII GATC 1 cut(s) 222
NlaIII CATG 4 cut(s) 65, 71, 371, 505
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 367
PciI ACATGT 1 cut(s) 501
PkrI GCNGC 2 cut(s) 256, 438
PscI ACATGT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 120, 163
PspGI CCWGG 2 cut(s) 120, 163
PstI CTGCAG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 291, 354
SatI GCNGC 2 cut(s) 255, 437
Sau3AI GATC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 122, 165
SduI GDGCHC 1 cut(s) 271
SetI ASST 4 cut(s) 279, 306, 435, 479
SfaNI GCATC 2 cut(s) 365, 473
SfcI CTRYAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 182, 290
SmoI CTYRAG 2 cut(s) 182, 290
Sse9I AATT 2 cut(s) 36, 169
StyD4I CCNGG 2 cut(s) 120, 163
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 190, 343
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 398
TasI AATT 2 cut(s) 36, 169
Tru1I TTAA 2 cut(s) 291, 354
Tru9I TTAA 2 cut(s) 291, 354
TscAI CASTG 5 cut(s) 256, 346, 354, 408, 427
TseI GCWGC 2 cut(s) 254, 436
TspDTI ATGAA 4 cut(s) 47, 356, 443, 475
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 5 cut(s) 256, 346, 354, 408, 427
Vha464I CTTAAG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 267
XapI RAATTY 1 cut(s) 36
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.