Prupe.6G039900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017636
Physical Location & Seq
Reverse (-)
2994100 .. 2995672
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G039900.1

Sequence Viewer

Length: 525 bp
ATGGAAAATTACAAGACCTTTGTTGGTGGAAAGATTGGGTTGATTTGTTTCACTTTGGGGATGTTCCTTGTGTTTCAAAGTGCTCATGCTTTCAATAAAACAGCGCCCACACACAATGTAAATCTAAGCCCATTCGCGGGTTGGATGAGTGCTTTCTATTGCGTGAACAAAACAGCACCTGTTCATTGCTCGCCAAAGGGGCAGCTGACATTCAGTGGAATAGTGGACGTGGCCCCAAGTGAGAAGGCAGACTATTGCAGTGATACAACAGGGTGCTCAAAACACGCCTTGGGTGTGCTTGAATGCATCTACTTGGTCAAAAGAGACTTCTGGTTTCATAACAATGCCACTGTAGGATTCCTCAATCGAACCATCACTGAGGGATGTTCCAATAAAAATAATAATTCAGGTATTTCAACGGCGAATTTCAAGAGCAGTGGGATGAAGGTGTACCAGAAGATGTACATACCATTTGTTGCATCACTGTCAAGCTTGGCCTTCATAGCCATGTCCAACATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

8.98

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40790
malus_domestica MD11G1052300.v1.1
prunus_persica Prupe.6G039900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073511
rosa_laevigata RLG00000036389
rosa_roxburghii Rroxscaffold_1G00007760
rosa_rugosa Rorug05G0424100
rosa_samantha Rh5AG481400 Rh5BG502100 Rh5CG525300 Rh5DG514300
rosa_wichuraiana Rw5G044720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 2 cut(s) 452, 464
AfiI CCNNNNNNNGG 2 cut(s) 136, 137
AgsI TTSAA 5 cut(s) 77, 94, 302, 417, 430
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 2 cut(s) 205, 492
AluI AGCT 2 cut(s) 205, 492
Alw21I GWGCWC 2 cut(s) 85, 278
Alw26I GTCTC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 2 cut(s) 231, 495
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 424
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 85, 278
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 2 cut(s) 315, 488
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 137
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 4 cut(s) 66, 150, 389, 447
BseLI CCNNNNNNNGG 2 cut(s) 136, 137
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 233, 497
BsiHKAI GWGCWC 2 cut(s) 85, 278
BslI CCNNNNNNNGG 2 cut(s) 136, 137
BsmAI GTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 233, 497
Bsp1286I GDGCHC 2 cut(s) 85, 278
Bsp1407I TGTACA 1 cut(s) 462
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 233, 497
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 352, 486
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 125, 378
BstF5I GGATG 4 cut(s) 66, 150, 389, 447
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 199, 503
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 233, 497
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 4 cut(s) 66, 150, 389, 447
BtsI GCAGTG 2 cut(s) 265, 442
BtsIMutI CAGTG 6 cut(s) 220, 265, 348, 375, 442, 482
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 451, 463
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 3 cut(s) 86, 508, 520
CviJI RGCY 6 cut(s) 129, 205, 233, 492, 497, 506
CviKI_1 RGCY 6 cut(s) 129, 205, 233, 492, 497, 506
CviQI GTAC 2 cut(s) 451, 463
DdeI CTNAG 2 cut(s) 125, 378
Eco130I CCWWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 89, 511, 523
FaiI YATR 6 cut(s) 87, 339, 467, 503, 509, 521
FatI CATG 3 cut(s) 85, 507, 519
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 4 cut(s) 73, 157, 396, 454
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 233, 497
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 89, 511, 523
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 1 cut(s) 357
Hpy166II GTNNAC 3 cut(s) 166, 226, 451
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 3 cut(s) 166, 226, 451
HpyAV CCTTC 3 cut(s) 238, 439, 508
HpyCH4III ACNGT 2 cut(s) 352, 486
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 258, 306, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 503
HpyF3I CTNAG 2 cut(s) 125, 378
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 3 cut(s) 89, 511, 523
HspAI GCGC 1 cut(s) 104
LpnPI CCDG 5 cut(s) 192, 255, 316, 393, 467
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 2 cut(s) 315, 488
MaeII ACGT 1 cut(s) 228
MboII GAAGA 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 85, 278
MluCI AATT 3 cut(s) 7, 403, 424
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 2 cut(s) 371, 373
Mph1103I ATGCAT 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 342, 506
MspA1I CMGCKG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 308
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 199, 503
NlaIII CATG 3 cut(s) 89, 511, 523
NlaIV GGNNCC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 308
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 452, 464
RsaNI GTAC 2 cut(s) 451, 463
RseI CAYNNNNRTG 2 cut(s) 342, 506
SatI GCNGC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 232
SduI GDGCHC 2 cut(s) 85, 278
SetI ASST 7 cut(s) 20, 181, 207, 231, 412, 450, 494
SfaNI GCATC 2 cut(s) 315, 488
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 342, 506
Sse9I AATT 3 cut(s) 7, 403, 424
SsiI CCGC 1 cut(s) 137
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 352, 486
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 7, 403, 424
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 357
TscAI CASTG 6 cut(s) 220, 265, 355, 382, 442, 489
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 173, 326, 458, 490
TspRI CASTG 6 cut(s) 220, 265, 355, 382, 442, 489
XapI RAATTY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.