Rorug05G0424100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017636
Physical Location & Seq
Forward (+)
58938554 .. 58940529
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0424100.1

Sequence Viewer

Length: 1521 bp
ATGATCTTAAGCATTCTGTGTGTGTTGCTTCTCTTAGCTCTGATCAAGGCCTTTCACAAACTATGGTGGACTCCGACTCGCATTCAGAATCTGATGCGTCTGCAGGGAATCAAAGGTCCTTCTTACAGACTTCACCATGGAAACACCAAAGAGATCATGAACATGCAAAATGAAGCGCTGAGCAGGCCCATAAATGTATCACATGATATCTATTCTCATGTTCAACCTCATATTCATGAATGGACCAAGAGATATGGGAAGAATTTTCTTCAATGGTATGGTCTTCAACCTGTTTTGGTTGTTACAGAACCCGAGTTGTGCAAAGAGATCCTCAACAACAAAGATGGAGTTTATCCGAAACAGAAGCCACCTGAAATTGTGAAGAAGCTATTAGGAGATAGCATATCCATGACAGAAGGTGAAAAATGGGTAAAGTTGAGAAAGGTGTCTAACCATGCCTTCCATGGAGACAGCTTAAAAAATATGTTTGCAGACATGAAAGCTAGTGCTGAGACGATGGTAGAAAGTTGGAAAGTTCATGAAGGAAAAGAGATTGATGTGTTTGAAGAATTTCGGTTGTACACTTCTGAAGTGATTTCAAGGACAGCATTTGGCAGCAGCTACTTAGAAGGCAAGACCATTTTTGACAAGTTGTCGAAGTTATACAGCATAATATTCAGAAATCTTCTCAAAATCAGGATTCCTGGCATGAGCAAGGTTTTTAGAACCAGTGATGACATTGAATCAGACGAGCTTGAGAAAGGAATACGCGACTCCATATTGGAAATTGTTAAGAAAAGAGAAATGGAGGCTACCATTGGAGAAGACAACAGCTTTGGGAATGATTTTCTAGGATTGCTTTTAGAGGCTCATCATGGTTCCAATGACAAGCAGCGGATTTCGATTGACGAGTTGGTTGAGGAATGCAGGACTTTTTACTTTGCTGGACAAGAGACTACTAATTCTATACTTTCATGGATTATCCTTCTTCTGGCACAACACCCTGATTGGCAAGAGGAAGCAAGAAAAGAGGTGCTACAGTTGTTTGGCAAACAAACTCCAAATTACGATGGCCTTGCCAAACTCAAAACAATGAGTATGATTATCAATGAGACTCTAAGGTTATATCCTCCTGCTGTTTTGCTTATAAGGAAAGTTGAAAGGGAAGTTAGACTGGGAAAACTCCTGGTTCCTGCTAATATGGAGTTGCTTGTCCCACCTCTAGCACTTCACCATGAACCTCAGTTCTGGGGACAAGATGTGGGATTGTTCAAGCCAGAGCGATTCTCTGAAGGGGTTGCTAAAGCTACAAACGAAAACATGGCCGCATTCATGCCTTTTGGAATGGGACCTAGAATGTGTGTCGGATTCAACTTTGCTGCCACTGAAGCAAAGATCGCTCTGTCAATGATTCTGCAACGCTACTCATTTACCCTTTCCCCGGGTTATGTCCACTCGCCCTGTCCTTTTATTACCGTTCGGCCACAACATGGAGTTCAAGTAATACTACACTCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

506

Amino Acids

57.99

Weight (kDa)

8.11

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 75 - 482 6.7e-83 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40790
malus_domestica MD11G1052300.v1.1
prunus_persica Prupe.6G039900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073511
rosa_laevigata RLG00000036389
rosa_roxburghii Rroxscaffold_1G00007760
rosa_rugosa Rorug05G0424100
rosa_samantha Rh5AG481400 Rh5BG502100 Rh5CG525300 Rh5DG514300
rosa_wichuraiana Rw5G044720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AccB7I CCANNNNNTGG 1 cut(s) 1490
AccII CGCG 1 cut(s) 771
AciI CCGC 2 cut(s) 895, 1326
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 2 cut(s) 1323, 1481
AcsI RAATTY 2 cut(s) 262, 569
AcuI CTGAAG 3 cut(s) 609, 1311, 1407
AfaI GTAC 1 cut(s) 581
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 991, 1441, 1490
AflII CTTAAG 1 cut(s) 7
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 2 cut(s) 703, 1185
AluBI AGCT 8 cut(s) 38, 388, 474, 503, 621, 754, 834, 1307
AluI AGCT 8 cut(s) 38, 388, 474, 503, 621, 754, 834, 1307
Alw26I GTCTC 4 cut(s) 462, 506, 947, 1106
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 2 cut(s) 311, 1441
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 5 cut(s) 48, 185, 1072, 1323, 1481
ApeKI GCWGC 4 cut(s) 615, 618, 892, 1379
ApoI RAATTY 2 cut(s) 262, 569
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 116, 186, 243, 1349
AsuC2I CCSGG 2 cut(s) 1442, 1443
AsuHPI GGTGA 3 cut(s) 125, 431, 1223
AvaI CYCGRG 2 cut(s) 311, 1441
AvaII GGWCC 3 cut(s) 116, 243, 1349
BbsI GAAGAC 2 cut(s) 275, 831
BbvI GCAGC 4 cut(s) 627, 630, 904, 1366
BccI CCATC 3 cut(s) 338, 511, 1064
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 2 cut(s) 705, 1187
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 2 cut(s) 1442, 1443
BcoDI GTCTC 4 cut(s) 462, 506, 947, 1106
BfaI CTAG 4 cut(s) 504, 851, 1223, 1353
BfmI CTRYAG 2 cut(s) 101, 1037
BfoI RGCGCY 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 5 cut(s) 616, 619, 893, 1326, 1380
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 617, 620, 894, 1327, 1381
Bme1390I CCNGG 4 cut(s) 705, 1187, 1442, 1443
Bme18I GGWCC 3 cut(s) 116, 243, 1349
BmeRI GACNNNNNGTC 1 cut(s) 652
BmeT110I CYCGRG 2 cut(s) 311, 1441
BmgT120I GGNCC 4 cut(s) 116, 186, 243, 1349
BmiI GGNNCC 3 cut(s) 880, 1191, 1350
BmrFI CCNGG 4 cut(s) 705, 1187, 1442, 1443
BmrI ACTGGG 1 cut(s) 1184
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 1184
BpiI GAAGAC 2 cut(s) 275, 831
BplI GAGNNNNNCTC 2 cut(s) 1271, 1303
Bpu1102I GCTNAGC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 776
BpuMI CCSGG 2 cut(s) 1442, 1443
BsaJI CCNNGG 4 cut(s) 136, 463, 1440, 1441
BsaXI ACNNNNNCTCC 2 cut(s) 1485, 1515
Bsc4I CCNNNNNNNGG 3 cut(s) 991, 1441, 1490
Bse1I ACTGG 2 cut(s) 729, 1179
BseBI CCWGG 2 cut(s) 705, 1187
BseDI CCNNGG 4 cut(s) 136, 463, 1440, 1441
BseLI CCNNNNNNNGG 3 cut(s) 991, 1441, 1490
BseMII CTCAG 3 cut(s) 170, 501, 1256
BseNI ACTGG 2 cut(s) 729, 1179
BseXI GCAGC 4 cut(s) 627, 630, 904, 1366
Bsh1236I CGCG 1 cut(s) 771
BshFI GGCC 5 cut(s) 50, 187, 1074, 1325, 1483
BsiHKCI CYCGRG 2 cut(s) 311, 1441
BsiSI CCGG 1 cut(s) 1442
BslFI GGGAC 3 cut(s) 1199, 1266, 1362
BslI CCNNNNNNNGG 3 cut(s) 991, 1441, 1490
BsmAI GTCTC 4 cut(s) 462, 506, 947, 1106
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 3 cut(s) 1199, 1266, 1362
BsmI GAATGC 4 cut(s) 12, 81, 929, 1328
BsnI GGCC 5 cut(s) 50, 187, 1074, 1325, 1483
BsoBI CYCGRG 2 cut(s) 311, 1441
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 5 cut(s) 3, 42, 153, 327, 1395
Bsp1720I GCTNAGC 1 cut(s) 179
Bsp19I CCATGG 2 cut(s) 136, 463
BspACI CCGC 2 cut(s) 895, 1326
BspANI GGCC 5 cut(s) 50, 187, 1074, 1325, 1483
BspCNI CTCAG 3 cut(s) 171, 502, 1255
BspFNI CGCG 1 cut(s) 771
BspHI TCATGA 3 cut(s) 156, 235, 538
BspLI GGNNCC 3 cut(s) 880, 1191, 1350
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 2 cut(s) 729, 1179
BssECI CCNNGG 4 cut(s) 136, 463, 1440, 1441
BssMI GATC 5 cut(s) 3, 42, 153, 327, 1395
BssT1I CCWWGG 2 cut(s) 136, 463
Bst2UI CCWGG 2 cut(s) 705, 1187
Bst4CI ACNGT 2 cut(s) 1041, 1477
BstAFI CTTAAG 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 6 cut(s) 34, 179, 510, 625, 1118, 1242
BstDSI CCRYGG 2 cut(s) 136, 463
BstFNI CGCG 1 cut(s) 771
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 6, 45, 156, 330, 1398
BstMAI GTCTC 4 cut(s) 462, 506, 947, 1106
BstMBI GATC 5 cut(s) 3, 42, 153, 327, 1395
BstMWI GCNNNNNNNGC 3 cut(s) 184, 1388, 1397
BstNI CCWGG 2 cut(s) 705, 1187
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 4 cut(s) 703, 1185, 1440, 1441
BstSFI CTRYAG 2 cut(s) 101, 1037
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 4 cut(s) 627, 630, 904, 1366
BstV2I GAAGAC 2 cut(s) 275, 831
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 5 cut(s) 50, 187, 1074, 1325, 1483
BtgI CCRYGG 2 cut(s) 136, 463
BtsIMutI CAGTG 2 cut(s) 736, 1383
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 91
CciI TCATGA 3 cut(s) 156, 235, 538
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 4 cut(s) 116, 186, 243, 1349
Cfr9I CCCGGG 1 cut(s) 1441
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 580
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 6 cut(s) 34, 179, 510, 625, 1118, 1242
DpnI GATC 5 cut(s) 5, 44, 155, 329, 1397
DpnII GATC 5 cut(s) 3, 42, 153, 327, 1395
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 1323, 1481
Eam1105I GACNNNNNGTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 136, 463
Eco147I AGGCCT 1 cut(s) 50
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 116, 243, 1349
Eco47III AGCGCT 1 cut(s) 177
Eco57I CTGAAG 3 cut(s) 609, 1311, 1407
Eco88I CYCGRG 2 cut(s) 311, 1441
EcoO109I RGGNCCY 2 cut(s) 116, 1349
EcoRII CCWGG 2 cut(s) 703, 1185
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 136, 463
ErhI CCWWGG 2 cut(s) 136, 463
Esp3I CGTCTC 1 cut(s) 506
FaqI GGGAC 3 cut(s) 1199, 1266, 1362
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 616, 619, 893, 1326, 1380
Fsp4HI GCNGC 5 cut(s) 616, 619, 893, 1326, 1380
FspBI CTAG 4 cut(s) 504, 851, 1223, 1353
GlaI GCGC 1 cut(s) 177
GluI GCNGC 5 cut(s) 616, 619, 893, 1326, 1380
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 5 cut(s) 50, 187, 1074, 1325, 1483
HapII CCGG 1 cut(s) 1442
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 178
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HpaII CCGG 1 cut(s) 1442
HphI GGTGA 3 cut(s) 125, 431, 1223
Hpy166II GTNNAC 3 cut(s) 69, 582, 1453
Hpy188III TCNNGA 4 cut(s) 157, 236, 539, 697
Hpy8I GTNNAC 3 cut(s) 69, 582, 1453
HpyAV CCTTC 7 cut(s) 129, 410, 469, 536, 623, 995, 1286
HpyCH4III ACNGT 2 cut(s) 1041, 1477
HpyCH4V TGCA 6 cut(s) 103, 166, 321, 491, 927, 1417
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 1388, 1397
HpyF3I CTNAG 6 cut(s) 34, 179, 510, 625, 1118, 1242
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 5 cut(s) 3, 42, 153, 327, 1395
Lsp1109I GCAGC 4 cut(s) 627, 630, 904, 1366
LweI GCATC 1 cut(s) 84
MaeI CTAG 4 cut(s) 504, 851, 1223, 1353
MaeIII GTNAC 1 cut(s) 301
MalI GATC 5 cut(s) 5, 44, 155, 329, 1397
MboI GATC 5 cut(s) 3, 42, 153, 327, 1395
MboII GAAGA 8 cut(s) 260, 271, 275, 394, 578, 677, 836, 980
MflI RGATCY 1 cut(s) 327
MluCI AATT 6 cut(s) 262, 375, 569, 786, 961, 1063
MlyI GAGTC 4 cut(s) 64, 70, 767, 1108
MmeI TCCRAC 3 cut(s) 98, 509, 1345
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 3 cut(s) 8, 476, 792
MslI CAYNNNNRTG 3 cut(s) 161, 234, 407
MspA1I CMGCKG 1 cut(s) 895
MspCI CTTAAG 1 cut(s) 7
MspI CCGG 1 cut(s) 1442
MspR9I CCNGG 4 cut(s) 705, 1187, 1442, 1443
Mva1269I GAATGC 4 cut(s) 12, 81, 929, 1328
MvaI CCWGG 2 cut(s) 705, 1187
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 3 cut(s) 184, 1388, 1397
NciI CCSGG 2 cut(s) 1442, 1443
NcoI CCATGG 2 cut(s) 136, 463
NdeII GATC 5 cut(s) 3, 42, 153, 327, 1395
NlaIV GGNNCC 3 cut(s) 880, 1191, 1350
NspI RCATGY 1 cut(s) 166
PagI TCATGA 3 cut(s) 156, 235, 538
PceI AGGCCT 1 cut(s) 50
PctI GAATGC 4 cut(s) 12, 81, 929, 1328
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 7 cut(s) 88, 108, 700, 743, 1284, 1368, 1411
PflMI CCANNNNNTGG 1 cut(s) 1490
PkrI GCNGC 5 cut(s) 617, 620, 894, 1327, 1381
PleI GAGTC 4 cut(s) 64, 70, 767, 1108
PpsI GAGTC 4 cut(s) 64, 70, 767, 1108
PpuMI RGGWCCY 2 cut(s) 116, 1349
PsiI TTATAA 1 cut(s) 1148
Psp5II RGGWCCY 2 cut(s) 116, 1349
Psp6I CCWGG 2 cut(s) 703, 1185
PspGI CCWGG 2 cut(s) 703, 1185
PspN4I GGNNCC 3 cut(s) 880, 1191, 1350
PspPI GGNCC 4 cut(s) 116, 186, 243, 1349
PspPPI RGGWCCY 2 cut(s) 116, 1349
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 3 cut(s) 161, 234, 407
SaqAI TTAA 3 cut(s) 8, 476, 792
SatI GCNGC 5 cut(s) 616, 619, 893, 1326, 1380
Sau3AI GATC 5 cut(s) 3, 42, 153, 327, 1395
Sau96I GGNCC 4 cut(s) 116, 186, 243, 1349
SchI GAGTC 4 cut(s) 64, 70, 767, 1108
ScrFI CCNGG 4 cut(s) 705, 1187, 1442, 1443
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 2 cut(s) 101, 1037
SinI GGWCC 3 cut(s) 116, 243, 1349
SmaI CCCGGG 1 cut(s) 1443
SmiMI CAYNNNNRTG 3 cut(s) 161, 234, 407
SmlI CTYRAG 2 cut(s) 7, 755
SmoI CTYRAG 2 cut(s) 7, 755
Sse9I AATT 6 cut(s) 262, 375, 569, 786, 961, 1063
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 2 cut(s) 895, 1326
SspI AATATT 1 cut(s) 675
SspMI CTAG 4 cut(s) 504, 851, 1223, 1353
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 4 cut(s) 703, 1185, 1440, 1441
StyI CCWWGG 2 cut(s) 136, 463
TaaI ACNGT 2 cut(s) 1041, 1477
TaqI TCGA 2 cut(s) 656, 902
TasI AATT 6 cut(s) 262, 375, 569, 786, 961, 1063
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 1328
TfiI GAWTC 7 cut(s) 88, 108, 700, 743, 1284, 1368, 1411
Tru1I TTAA 3 cut(s) 8, 476, 792
Tru9I TTAA 3 cut(s) 8, 476, 792
TscAI CASTG 2 cut(s) 736, 1390
TseI GCWGC 4 cut(s) 615, 618, 892, 1379
TspMI CCCGGG 1 cut(s) 1441
TspRI CASTG 2 cut(s) 736, 1390
Van91I CCANNNNNTGG 1 cut(s) 1490
Vha464I CTTAAG 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 116, 243, 1349
XapI RAATTY 2 cut(s) 262, 569
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmaI CCCGGG 1 cut(s) 1441
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 4 cut(s) 504, 851, 1223, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.