MD11G1052300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017636
Physical Location & Seq
Reverse (-)
4476917 .. 4478379
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1052300.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGAGATTGGTGGGAAAATTGGGTTGGTTTGGTTTTCTCTGGGGATTTTCCTTCTATTTCAAAATGCTCAGGCCTTTAATAAAACAGACCCTACAGACAATGTAAATCTAAGTCCATTCTATGCTTGGGAAAGTGCTTACTACTGCATGAACAGAACAGCACCTTCTCAATGTTCGGCAAAGGGGCAGCTGACATTCTCAGGAATAGTGGACGTGGCCGCAAATGAGTCCAGAGAATACTGCAGCTCAGGTTGCTCAGCACACGCCTTGGAGGTTCTTAAATGTATCTACCTCTGCAAAAGGGACTTCTGGTTTCATAACAATGCCACTGTGCATGTCCTCAACACAACCATCACTGAGGGATGTAAGAATAATAATTCAGCTATTTCGACAGTGGATTACAAAAGCAGTGGCATGAAGGTGTTCCAAAAGATGCACGTACCATTTGTTGCATCACTCTCAACCTTGGCCTTCATAGCGACGTCCAACATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.22

Weight (kDa)

7.58

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 40 - 126 8.6e-23 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40790
malus_domestica MD11G1052300.v1.1
prunus_persica Prupe.6G039900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073511
rosa_laevigata RLG00000036389
rosa_roxburghii Rroxscaffold_1G00007760
rosa_rugosa Rorug05G0424100
rosa_samantha Rh5AG481400 Rh5BG502100 Rh5CG525300 Rh5DG514300
rosa_wichuraiana Rw5G044720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 485
AciI CCGC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 1 cut(s) 441
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 3 cut(s) 190, 246, 383
AluI AGCT 3 cut(s) 190, 246, 383
AoxI GGCC 3 cut(s) 72, 216, 468
ApeKI GCWGC 2 cut(s) 187, 243
Asp700I GAANNNNTTC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 199, 255
BccI CCATC 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 93, 241
BisI GCNGC 3 cut(s) 188, 219, 244
BlpI GCTNAGC 1 cut(s) 256
BlsI GCNGC 3 cut(s) 189, 220, 245
BmgBI CACGTC 1 cut(s) 214
BmsI GCATC 2 cut(s) 423, 461
Bpu10I CCTNAGC 2 cut(s) 69, 247
Bpu1102I GCTNAGC 1 cut(s) 256
BsaAI YACGTR 1 cut(s) 439
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 267, 465
BseDI CCNNGG 2 cut(s) 267, 465
BseGI GGATG 1 cut(s) 368
BseMII CTCAG 5 cut(s) 83, 213, 261, 270, 348
BseXI GCAGC 2 cut(s) 199, 255
BshFI GGCC 3 cut(s) 74, 218, 470
BslFI GGGAC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 3 cut(s) 74, 218, 470
Bsp1720I GCTNAGC 1 cut(s) 256
BspACI CCGC 1 cut(s) 219
BspANI GGCC 3 cut(s) 74, 218, 470
BspCNI CTCAG 5 cut(s) 82, 212, 260, 269, 349
BspMAI CTGCAG 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 267, 465
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 267, 465
Bst4CI ACNGT 2 cut(s) 331, 394
BstACI GRCGYC 1 cut(s) 482
BstBAI YACGTR 1 cut(s) 439
BstDEI CTNAG 6 cut(s) 69, 110, 199, 247, 256, 357
BstF5I GGATG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 252, 476
BstNSI RCATGY 1 cut(s) 338
BstSFI CTRYAG 2 cut(s) 93, 241
BstV1I GCAGC 2 cut(s) 199, 255
BsuRI GGCC 3 cut(s) 74, 218, 470
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 368
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 4 cut(s) 327, 354, 399, 415
Csp6I GTAC 1 cut(s) 440
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 4 cut(s) 148, 335, 415, 493
CviJI RGCY 6 cut(s) 74, 190, 218, 246, 383, 470
CviKI_1 RGCY 6 cut(s) 74, 190, 218, 246, 383, 470
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 6 cut(s) 69, 110, 199, 247, 256, 357
EaeI YGGCCR 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 267, 465
Eco147I AGGCCT 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 267, 465
ErhI CCWWGG 2 cut(s) 267, 465
FaeI CATG 4 cut(s) 151, 338, 418, 496
FaiI YATR 7 cut(s) 123, 149, 318, 336, 416, 476, 494
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 147, 334, 414, 492
Fnu4HI GCNGC 3 cut(s) 188, 219, 244
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 188, 219, 244
GluI GCNGC 3 cut(s) 188, 219, 244
HaeIII GGCC 3 cut(s) 74, 218, 470
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 4 cut(s) 151, 338, 418, 496
HinfI GANTC 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 201, 231
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 62, 174, 412, 481
HpyCH4III ACNGT 2 cut(s) 331, 394
HpyCH4IV ACGT 3 cut(s) 213, 438, 482
HpyCH4V TGCA 6 cut(s) 147, 243, 297, 334, 436, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 476
HpyF3I CTNAG 6 cut(s) 69, 110, 199, 247, 256, 357
HpySE526I ACGT 3 cut(s) 213, 438, 482
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 4 cut(s) 151, 338, 418, 496
LpnPI CCDG 6 cut(s) 26, 56, 186, 234, 244, 295
Lsp1109I GCAGC 2 cut(s) 199, 255
LweI GCATC 2 cut(s) 423, 461
MaeII ACGT 3 cut(s) 213, 438, 482
MluCI AATT 2 cut(s) 18, 376
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 4 cut(s) 265, 302, 350, 352
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 2 cut(s) 78, 279
MslI CAYNNNNRTG 2 cut(s) 321, 419
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 252, 476
NlaIII CATG 4 cut(s) 151, 338, 418, 496
NspI RCATGY 1 cut(s) 338
PceI AGGCCT 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 422
PkrI GCNGC 3 cut(s) 189, 220, 245
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 439
PstI CTGCAG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 321, 419
SaqAI TTAA 2 cut(s) 78, 279
SatI GCNGC 3 cut(s) 188, 219, 244
SchI GAGTC 1 cut(s) 236
SfaNI GCATC 2 cut(s) 423, 461
SfcI CTRYAG 2 cut(s) 93, 241
SmiMI CAYNNNNRTG 2 cut(s) 321, 419
Sse9I AATT 2 cut(s) 18, 376
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 1 cut(s) 219
StuI AGGCCT 1 cut(s) 74
StyI CCWWGG 2 cut(s) 267, 465
TaaI ACNGT 2 cut(s) 331, 394
TaiI ACGT 3 cut(s) 216, 441, 485
TaqI TCGA 1 cut(s) 389
TasI AATT 2 cut(s) 18, 376
TauI GCSGC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 78, 279
Tru9I TTAA 2 cut(s) 78, 279
TscAI CASTG 4 cut(s) 334, 361, 399, 415
TseI GCWGC 2 cut(s) 187, 243
TspDTI ATGAA 4 cut(s) 164, 305, 431, 463
TspRI CASTG 4 cut(s) 334, 361, 399, 415
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 422
ZraI GACGTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.