FvH4_3g41460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018407
Physical Location & Seq
Forward (+)
34827114 .. 34827953
840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41460.t1

Sequence Viewer

Length: 840 bp
ATGGCGACGCGACAGCTTTCTAGCAGTTTGATGAACTTGAAGTTCATGCAGAGGGCAATTCAGAGAGAGGAGCAGGTGAAGAAACAAGGAGAACATGTCAAAATTGACGCTGGTGGTGTTGGGGGCTTTGCTTTTCCCTCTGCTGTTTCTATCCAACCAACCAGATATCTGGTCGCAATAGAAGGTGACCCCAAACCTGCAGCTGTTAGAGGTAGGATGTCGTTTAAGGGTTTCAATCCATTAATTGAGAAACTGAGTGACACATCAGCAAACCCTAATGGCGACCATCAAAGAAGACAACACTATGAAACACAAAACCTGAATAATTTGAGCAAAACAAATTATTCGTCACCATTTAAAGGTCTTTCCTTCAGCAACCAGAATCAAGCATCAGCAGACCCAAATGGATACCGTAAAAGAAAACAGTTTGAAGAAGTTTATGATACACAGTATCCAAAGAAATGGCACAAAACTAATCAAGGTTATCGACAGCCATCCCTAAATGAAAATGGAGGCTCCTTCAAGAAACCAGAGAATAGATATTTCAAGACAAGACCATTCTTAGGCGTCAAAGAGTTTGATGAGAAGAGGTTAATCATAACTATAAACCAAAATCACGCATCAGCAAATCCAAATGGATACCGTAAAAGAAAACAGTTTGAAGAAGATTGTGATACACAGTATCCAAAAAAATGGTACAAAATTAATCAAGGTTATCGACAGCCATCCCCAAACAAAAGTAGATGCTCCTACAAGAAACCAGAGAATAGAAATTTCAAGACTAGACCATTCTTAGGCATCAAAGAGTTTAATCAGAAGAGATTAATCATAGCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

280

Amino Acids

32.45

Weight (kDa)

10.1

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 98 1.6e-10 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41460
rosa_laevigata RLG00000036475
rosa_multiflora Rmu_sc0000573.1_g000002 Rmu_sc0025084.1_g000001
rosa_roxburghii Rroxscaffold_1G00007100
rosa_rugosa Rorug05G0431700
rosa_samantha Rh5BG509700 Rh5CG533500 Rh5DG522600
rosa_wichuraiana Rw5G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 64
Acc36I ACCTGC 2 cut(s) 64, 205
AccII CGCG 1 cut(s) 10
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 355
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 3 cut(s) 359, 563, 794
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 7 cut(s) 40, 235, 431, 523, 547, 662, 778
AluBI AGCT 3 cut(s) 16, 203, 833
AluI AGCT 3 cut(s) 16, 203, 833
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 772
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AseI ATTAAT 3 cut(s) 242, 705, 824
AsuHPI GGTGA 3 cut(s) 88, 197, 342
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 212
BccI CCATC 3 cut(s) 294, 502, 733
BciVI GTATCC 4 cut(s) 401, 462, 632, 693
BfaI CTAG 3 cut(s) 21, 783, 834
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 2 cut(s) 64, 205
BfuI GTATCC 4 cut(s) 401, 462, 632, 693
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 4 cut(s) 398, 629, 734, 807
BpiI GAAGAC 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 563, 794
BseGI GGATG 3 cut(s) 222, 494, 725
BseLI CCNNNNNNNGG 3 cut(s) 359, 563, 794
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 10
BslI CCNNNNNNNGG 3 cut(s) 359, 563, 794
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 517
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 2 cut(s) 64, 205
BssNI GRCGYC 1 cut(s) 567
Bst4CI ACNGT 6 cut(s) 413, 426, 450, 644, 657, 681
Bst6I CTCTTC 2 cut(s) 581, 812
BstACI GRCGYC 1 cut(s) 567
BstDEI CTNAG 3 cut(s) 254, 562, 793
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 3 cut(s) 222, 494, 725
BstFNI CGCG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 98
BstPI GGTNACC 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 301
BstXI CCANNNNNNTGG 3 cut(s) 169, 462, 693
BsuI GTATCC 4 cut(s) 401, 462, 632, 693
BtsCI GGATG 3 cut(s) 222, 494, 725
BveI ACCTGC 2 cut(s) 64, 205
CseI GACGC 3 cut(s) 16, 116, 556
Csp6I GTAC 1 cut(s) 697
CviAII CATG 2 cut(s) 46, 95
CviJI RGCY 7 cut(s) 16, 126, 203, 493, 516, 724, 833
CviKI_1 RGCY 7 cut(s) 16, 126, 203, 493, 516, 724, 833
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 3 cut(s) 254, 562, 793
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 581, 812
EarI CTCTTC 2 cut(s) 581, 812
Eco32I GATATC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 355
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoRV GATATC 1 cut(s) 167
FaeI CATG 2 cut(s) 49, 98
FaiI YATR 7 cut(s) 47, 96, 306, 441, 599, 605, 830
FatI CATG 2 cut(s) 45, 94
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 229, 481, 712
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 3 cut(s) 21, 783, 834
GluI GCNGC 1 cut(s) 201
HgaI GACGC 3 cut(s) 16, 116, 556
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 2 cut(s) 49, 98
HinfI GANTC 1 cut(s) 382
HphI GGTGA 3 cut(s) 88, 197, 342
Hpy188I TCNGA 2 cut(s) 63, 816
Hpy188III TCNNGA 3 cut(s) 523, 547, 778
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 176, 379, 529
HpyCH4III ACNGT 6 cut(s) 413, 426, 450, 644, 657, 681
HpyCH4V TGCA 2 cut(s) 49, 200
HpyF3I CTNAG 3 cut(s) 254, 562, 793
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 2 cut(s) 49, 98
LmnI GCTCC 3 cut(s) 70, 521, 752
LpnPI CCDG 9 cut(s) 59, 96, 155, 175, 210, 332, 392, 543, 774
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 4 cut(s) 398, 629, 734, 807
MaeI CTAG 3 cut(s) 21, 783, 834
MaeIII GTNAC 3 cut(s) 185, 257, 348
MboII GAAGA 7 cut(s) 91, 306, 443, 598, 674, 677, 829
MluCI AATT 7 cut(s) 57, 102, 243, 325, 340, 702, 772
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 6 cut(s) 45, 61, 148, 203, 506, 582
MseI TTAA 7 cut(s) 225, 242, 357, 593, 705, 810, 824
MspA1I CMGCKG 1 cut(s) 203
MvnI CGCG 1 cut(s) 10
NlaIII CATG 2 cut(s) 49, 98
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 185, 257, 348
NspI RCATGY 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 64
PciI ACATGT 1 cut(s) 94
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 202
PscI ACATGT 1 cut(s) 94
PshBI ATTAAT 3 cut(s) 242, 705, 824
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
SaqAI TTAA 7 cut(s) 225, 242, 357, 593, 705, 810, 824
SatI GCNGC 1 cut(s) 201
SfaNI GCATC 4 cut(s) 398, 629, 734, 807
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 7 cut(s) 57, 102, 243, 325, 340, 702, 772
SspMI CTAG 3 cut(s) 21, 783, 834
TaaI ACNGT 6 cut(s) 413, 426, 450, 644, 657, 681
TaqI TCGA 2 cut(s) 487, 718
TasI AATT 7 cut(s) 57, 102, 243, 325, 340, 702, 772
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 7 cut(s) 225, 242, 357, 593, 705, 810, 824
Tru9I TTAA 7 cut(s) 225, 242, 357, 593, 705, 810, 824
TseFI GTSAC 3 cut(s) 185, 257, 348
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 3 cut(s) 185, 257, 348
TspDTI ATGAA 4 cut(s) 34, 47, 321, 519
VspI ATTAAT 3 cut(s) 242, 705, 824
XapI RAATTY 1 cut(s) 772
XceI RCATGY 1 cut(s) 98
XspI CTAG 3 cut(s) 21, 783, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.