Rh5CG533500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018407
Physical Location & Seq
Forward (+)
74745309 .. 74746117
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG533500.1

Sequence Viewer

Length: 753 bp
ATGGTGACGCAAGAGCTTTCTAGCAGTTTGAGGAAGTTGAAGTTCATGCAGAGGGCAATTCAGAGAGAGGAGATGATGAAGAAACAAGGAGAAGAAGATGTCAAAATTGATGTTGGTGTAGGGGGTTTTATTTTTACTTCTGCTGTTGCTAGCCAACTAAGCAATTGTGTGATCGTAATAGAAAGTGACCCCAAACCTGCAGCAATTAGAGGTAGGATGTCGTTTAAAGGTTTCAATCCATTAATTGAGAAATTGAATGAAGCATCAGCAAACCCTAACGGTGACCATCAAAGAAAACACTCCGAAACACAAAATTTGAATAACTTGGGCAAAACAAATTATTCATCACCAGATAAAGGTCTTTCCTTCAATAACCAGAATCAAGCATCAGCAAACCCTAATGGATACCATAAAAGAAAACAGATTGAAGAAGTTTGTGATGTGTATCCAAATAAATGGCAGAAAACTAATCAAGGTTATCGGCAGCCATCACGAAATAAAAATAGAGACTCCTTCGATAACCGTAATCGAGCATCAGCAGACCCTAATGGATACTATAAAAGAAAAGAGTTTGAAGAAGTGTGTGCTACCCAATATCCAAATAAATGGCAGAAAACTAATGAAGGTTATCGGCATCCTTCACTAAACACTAATAGAGGCTCCTTCAAGAAACCAGAGGATAGAAATTGCTGGAATAGACCATTCTTAGGTGTCGAAGAGTTTAATCAGAAGAGGTGGATCATAACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

250

Amino Acids

28.94

Weight (kDa)

9.65

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 105 3e-11 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41460
rosa_laevigata RLG00000036475
rosa_multiflora Rmu_sc0000573.1_g000002 Rmu_sc0025084.1_g000001
rosa_roxburghii Rroxscaffold_1G00007100
rosa_rugosa Rorug05G0431700
rosa_samantha Rh5BG509700 Rh5CG533500 Rh5DG522600
rosa_wichuraiana Rw5G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 746
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 356, 707
AgsI TTSAA 8 cut(s) 40, 235, 256, 319, 370, 428, 575, 667
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 746
ApeKI GCWGC 2 cut(s) 200, 484
ApoI RAATTY 1 cut(s) 313
AseI ATTAAT 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 16, 293, 339
AsuNHI GCTAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 212, 496
BccI CCATC 2 cut(s) 294, 496
BciVI GTATCC 3 cut(s) 398, 456, 545
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 3 cut(s) 21, 150, 747
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 205
BfuI GTATCC 3 cut(s) 398, 456, 545
BisI GCNGC 2 cut(s) 201, 485
BlsI GCNGC 2 cut(s) 202, 486
BmiI GGNNCC 1 cut(s) 661
BmsI GCATC 4 cut(s) 272, 395, 542, 643
BmtI GCTAGC 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 707
Bse8I GATNNNNATC 1 cut(s) 444
BseGI GGATG 2 cut(s) 222, 634
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 356, 707
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 212, 496
BslI CCNNNNNNNGG 2 cut(s) 356, 707
BsmAI GTCTC 1 cut(s) 501
Bsp143I GATC 2 cut(s) 171, 738
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 1 cut(s) 746
BssMI GATC 2 cut(s) 171, 738
Bst4CI ACNGT 2 cut(s) 281, 524
Bst6I CTCTTC 2 cut(s) 711, 725
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 158, 706
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 2 cut(s) 222, 634
BstKTI GATC 2 cut(s) 174, 741
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 171, 738
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 212, 496
BstXI CCANNNNNNTGG 2 cut(s) 456, 606
BsuI GTATCC 3 cut(s) 398, 456, 545
BtsCI GGATG 2 cut(s) 222, 634
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 151
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 16, 153, 487, 660
CviKI_1 RGCY 4 cut(s) 16, 153, 487, 660
DdeI CTNAG 2 cut(s) 158, 706
DpnI GATC 2 cut(s) 173, 740
DpnII GATC 2 cut(s) 171, 738
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 711, 725
EarI CTCTTC 2 cut(s) 711, 725
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 411, 558, 743
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 201, 485
FokI GGATG 2 cut(s) 229, 621
Fsp4HI GCNGC 2 cut(s) 201, 485
FspBI CTAG 3 cut(s) 21, 150, 747
GluI GCNGC 2 cut(s) 201, 485
HgaI GACGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 379, 509
HphI GGTGA 3 cut(s) 16, 293, 339
Hpy188I TCNGA 3 cut(s) 63, 304, 729
Hpy188III TCNNGA 2 cut(s) 492, 667
HpyAV CCTTC 5 cut(s) 376, 523, 617, 648, 673
HpyCH4III ACNGT 2 cut(s) 281, 524
HpyCH4V TGCA 2 cut(s) 49, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 158, 706
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 171, 738
LmnI GCTCC 1 cut(s) 665
LpnPI CCDG 5 cut(s) 210, 363, 389, 676, 687
Lsp1109I GCAGC 2 cut(s) 212, 496
LweI GCATC 4 cut(s) 272, 395, 542, 643
MaeI CTAG 3 cut(s) 21, 150, 747
MaeIII GTNAC 3 cut(s) 4, 185, 281
MalI GATC 2 cut(s) 173, 740
MboI GATC 2 cut(s) 171, 738
MboII GAAGA 7 cut(s) 91, 104, 107, 440, 587, 728, 742
MfeI CAATTG 1 cut(s) 163
MluCI AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 685
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 7 cut(s) 24, 45, 61, 203, 650, 670, 726
MseI TTAA 3 cut(s) 225, 242, 723
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 171, 738
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 3 cut(s) 4, 185, 281
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 202, 486
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 661
PstI CTGCAG 1 cut(s) 202
SaqAI TTAA 3 cut(s) 225, 242, 723
SatI GCNGC 2 cut(s) 201, 485
Sau3AI GATC 2 cut(s) 171, 738
SchI GAGTC 1 cut(s) 503
SfaNI GCATC 4 cut(s) 272, 395, 542, 643
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 685
SspMI CTAG 3 cut(s) 21, 150, 747
TaaI ACNGT 2 cut(s) 281, 524
TaqI TCGA 3 cut(s) 516, 529, 714
TasI AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 685
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 3 cut(s) 225, 242, 723
Tru9I TTAA 3 cut(s) 225, 242, 723
TseFI GTSAC 3 cut(s) 4, 185, 281
TseI GCWGC 2 cut(s) 200, 484
Tsp45I GTSAC 3 cut(s) 4, 185, 281
TspDTI ATGAA 5 cut(s) 34, 92, 273, 333, 636
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 313
XspI CTAG 3 cut(s) 21, 150, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.