Rroxscaffold_1G00007100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018407
Physical Location & Seq
Reverse (-)
9102443 .. 9103198
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007100.1

Sequence Viewer

Length: 756 bp
ATGGTGACGCGAGAGCTTTCTAGCAGTTTGAGGAAGTTGAAGTTCATGCAGAGGGCAATTCAGAGAGAGGAGATGATGAAGAAACAAGGAGAAGAAGATGTCAAAATTGATGTTGGTGTAGGGGGTTTTATTTTTACTTCTGCTGTTGCTAGCCAACTAAGCAATTGTGTGATCGTAATAGAAGGTGACCCCAAACCTGCAGCAATTAGAGGTAGGATGTCGTTTAAAGGTTTCAATCCATTAATTGAGAAATTGAATGAAGCATCAGCAAACCCTAACGGTGACCATCAAAGAAAACACTCCGAAGCACAAAATTTGAATAACTTGGGCAAAACAAATTATTCATCACCATGTAAAGGTCTTTCCTTCAATAACCAGAATCAAGCATCAGCAAACCCTAATGGATACCATAAAAGAAAACAGATTGAAGAAGTTTGTGATACACAGTATCCAAATAAATGGCAGAAAACTAATCAAGGTTATCGGCAGCCATCACGAAATAAAAATAGAGACTCCTTCGATAACCGTAATCGAGCATCAGCAGACCCTAATGGATACTATAAAAGAAAAGAGTTTGAAGAAGTGTGTGCAATCCAATATCCAAATAAATGGCACAAAACTAATGAAGGTTATCGGCATCCTTCACTAAACACTAATAGAGGCTCCTTCAAGAAACCAGAGGATAGAAATTGCTGGAATAGACCATTCTTAGGTGTCGAAGAGTTTAATCAGAAGAGGTTGATCATAACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

251

Amino Acids

28.98

Weight (kDa)

9.72

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 103 4.4e-10 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41460
rosa_laevigata RLG00000036475
rosa_multiflora Rmu_sc0000573.1_g000002 Rmu_sc0025084.1_g000001
rosa_roxburghii Rroxscaffold_1G00007100
rosa_rugosa Rorug05G0431700
rosa_samantha Rh5BG509700 Rh5CG533500 Rh5DG522600
rosa_wichuraiana Rw5G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccII CGCG 1 cut(s) 10
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 356, 710
AgsI TTSAA 8 cut(s) 40, 235, 256, 319, 370, 428, 578, 670
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 200, 487
ApoI RAATTY 1 cut(s) 313
AseI ATTAAT 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 16, 197, 293, 339
AsuNHI GCTAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 212, 499
BccI CCATC 2 cut(s) 294, 499
BciVI GTATCC 3 cut(s) 398, 459, 548
BclI TGATCA 1 cut(s) 741
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 3 cut(s) 21, 150, 750
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 205
BfuI GTATCC 3 cut(s) 398, 459, 548
BisI GCNGC 2 cut(s) 201, 488
BlsI GCNGC 2 cut(s) 202, 489
BmiI GGNNCC 1 cut(s) 664
BmsI GCATC 4 cut(s) 272, 395, 545, 646
BmtI GCTAGC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 710
BseGI GGATG 2 cut(s) 222, 637
BseLI CCNNNNNNNGG 2 cut(s) 356, 710
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 212, 499
Bsh1236I CGCG 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 356, 710
BsmAI GTCTC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 171, 741
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 664
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 153
BssMI GATC 2 cut(s) 171, 741
Bst4CI ACNGT 3 cut(s) 281, 447, 527
Bst6I CTCTTC 2 cut(s) 714, 728
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 158, 709
BstEII GGTNACC 2 cut(s) 185, 281
BstF5I GGATG 2 cut(s) 222, 637
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 2 cut(s) 174, 744
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 2 cut(s) 171, 741
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstPI GGTNACC 2 cut(s) 185, 281
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 212, 499
BstXI CCANNNNNNTGG 2 cut(s) 459, 609
BsuI GTATCC 3 cut(s) 398, 459, 548
BtsCI GGATG 2 cut(s) 222, 637
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 151
CseI GACGC 1 cut(s) 16
CviAII CATG 2 cut(s) 46, 351
CviJI RGCY 4 cut(s) 16, 153, 490, 663
CviKI_1 RGCY 4 cut(s) 16, 153, 490, 663
DdeI CTNAG 2 cut(s) 158, 709
DpnI GATC 2 cut(s) 173, 743
DpnII GATC 2 cut(s) 171, 741
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 714, 728
EarI CTCTTC 2 cut(s) 714, 728
Eco91I GGTNACC 2 cut(s) 185, 281
EcoO65I GGTNACC 2 cut(s) 185, 281
FaeI CATG 2 cut(s) 49, 354
FaiI YATR 5 cut(s) 47, 352, 411, 561, 746
FatI CATG 2 cut(s) 45, 350
FbaI TGATCA 1 cut(s) 741
Fnu4HI GCNGC 2 cut(s) 201, 488
FokI GGATG 2 cut(s) 229, 624
Fsp4HI GCNGC 2 cut(s) 201, 488
FspBI CTAG 3 cut(s) 21, 150, 750
GluI GCNGC 2 cut(s) 201, 488
HgaI GACGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 49, 354
HinfI GANTC 2 cut(s) 379, 512
HphI GGTGA 4 cut(s) 16, 197, 293, 339
Hpy188I TCNGA 3 cut(s) 63, 304, 732
Hpy188III TCNNGA 2 cut(s) 495, 670
HpyAV CCTTC 6 cut(s) 176, 376, 526, 620, 651, 676
HpyCH4III ACNGT 3 cut(s) 281, 447, 527
HpyCH4V TGCA 3 cut(s) 49, 200, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 158, 709
Hsp92II CATG 2 cut(s) 49, 354
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 2 cut(s) 171, 741
LmnI GCTCC 1 cut(s) 668
LpnPI CCDG 4 cut(s) 210, 389, 679, 690
Lsp1109I GCAGC 2 cut(s) 212, 499
LweI GCATC 4 cut(s) 272, 395, 545, 646
MaeI CTAG 3 cut(s) 21, 150, 750
MaeIII GTNAC 3 cut(s) 4, 185, 281
MalI GATC 2 cut(s) 173, 743
MboI GATC 2 cut(s) 171, 741
MboII GAAGA 7 cut(s) 91, 104, 107, 440, 590, 731, 745
MfeI CAATTG 1 cut(s) 163
MluCI AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 688
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 7 cut(s) 24, 45, 61, 203, 653, 673, 729
MseI TTAA 3 cut(s) 225, 242, 726
MslI CAYNNNNRTG 1 cut(s) 349
MunI CAATTG 1 cut(s) 163
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 171, 741
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 49, 354
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 3 cut(s) 4, 185, 281
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 202, 489
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 242
PspEI GGTNACC 2 cut(s) 185, 281
PspN4I GGNNCC 1 cut(s) 664
PstI CTGCAG 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 349
SaqAI TTAA 3 cut(s) 225, 242, 726
SatI GCNGC 2 cut(s) 201, 488
Sau3AI GATC 2 cut(s) 171, 741
SchI GAGTC 1 cut(s) 506
SfaNI GCATC 4 cut(s) 272, 395, 545, 646
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 349
Sse9I AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 688
SspMI CTAG 3 cut(s) 21, 150, 750
TaaI ACNGT 3 cut(s) 281, 447, 527
TaqI TCGA 3 cut(s) 519, 532, 717
TasI AATT 9 cut(s) 57, 105, 163, 204, 243, 251, 313, 337, 688
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 3 cut(s) 225, 242, 726
Tru9I TTAA 3 cut(s) 225, 242, 726
TseFI GTSAC 3 cut(s) 4, 185, 281
TseI GCWGC 2 cut(s) 200, 487
Tsp45I GTSAC 3 cut(s) 4, 185, 281
TspDTI ATGAA 5 cut(s) 34, 92, 273, 333, 639
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 313
XspI CTAG 3 cut(s) 21, 150, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.