FvH4_3g44730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017072
Physical Location & Seq
Reverse (-)
37239547 .. 37242347
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44730.t1

Sequence Viewer

Length: 516 bp
ATGTTCGACAACGCTCTAACCCAAGGCCCCGACCCGAGCTCAAAACTTATGGGAAGGGCTCAAGGGTTTTACGGGAACTTTGCTTTTGTTCATGGGAAGTATAACGGCAGCACCATAACTCTGATGGCATGGGGAGGAACTCGATCTTCAACAAAGTACTACAACGACTACGATTCTAACTGGGATTATTTCTCCATCCCTCTCCACCTTTGCTTCTTCATCTCCATCCTCTTCTTCATCTTGGGATTCACATGGTACATAAACTACGAGTCCGTCATCGAAGACATGATGACTCAGGTCAAGCTCTTCCTCATGATCGTCCCCGTGATTCTGCTACTCGTCGTTCACTGCTTGTCTGGTGGCATGTCGTTTTTTGTGCCGTTGCCGGAGCAGGACTCGCTGCACAGAGCCGGAGGGTCTCCGTGGGGCGTCGCATGTGTGCTGATGTTTCTTTTTATCATGATCTCTTACCAGTCTTCTTTCCAAGAACGTTGGTTTCCCTTATACAGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.63

Weight (kDa)

6.02

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 1 - 42 3.4e-06 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31940
fragaria_vesca FvH4_3g44730
malus_domestica MD03G1010800.v1.1 MD11G1012600.v1.1
prunus_persica Prupe.2G001900_v2.0.a1 Prupe.6G010700_v2.0.a1
pyrus_communis pycom03g00960 pycom11g00820
rosa_chinensis RchiOBHm_Chr5g0081431
rosa_laevigata RLG00000036934
rosa_roxburghii Rroxscaffold_1G00002120
rosa_samantha Rh5DG561900
rosa_wichuraiana Rw5G049080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 2 cut(s) 158, 257
AgsI TTSAA 1 cut(s) 150
AluBI AGCT 2 cut(s) 39, 304
AluI AGCT 2 cut(s) 39, 304
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 108, 400
AspS9I GGNCC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 34
BanII GRGCYC 2 cut(s) 41, 61
BbsI GAAGAC 2 cut(s) 288, 468
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 120, 387
BccI CCATC 3 cut(s) 118, 203, 233
BceAI ACGGC 2 cut(s) 121, 364
BcoDI GTCTC 1 cut(s) 423
BisI GCNGC 2 cut(s) 109, 401
BlsI GCNGC 2 cut(s) 110, 402
BmcAI AGTACT 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 2 cut(s) 288, 468
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpuEI CTTGAG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 22, 422
Bse1I ACTGG 2 cut(s) 185, 472
BseDI CCNNGG 2 cut(s) 22, 422
BseGI GGATG 2 cut(s) 195, 225
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 185, 472
BseXI GCAGC 2 cut(s) 120, 387
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 386, 411
BslFI GGGAC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 41, 61
Bsp143I GATC 3 cut(s) 143, 315, 462
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 2 cut(s) 312, 459
BspLI GGNNCC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 423
BsrI ACTGG 2 cut(s) 185, 472
BssECI CCNNGG 2 cut(s) 22, 422
BssMI GATC 3 cut(s) 143, 315, 462
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 236, 311
BstACI GRCGYC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 195, 225
BstKTI GATC 3 cut(s) 146, 318, 465
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 3 cut(s) 143, 315, 462
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNSI RCATGY 2 cut(s) 367, 438
BstPAI GACNNNNGTC 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 120, 387
BstV2I GAAGAC 2 cut(s) 288, 468
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 422
BtsCI GGATG 2 cut(s) 195, 225
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
CciI TCATGA 2 cut(s) 312, 459
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 157, 256
CviAII CATG 8 cut(s) 92, 129, 252, 286, 313, 364, 435, 460
CviJI RGCY 5 cut(s) 27, 39, 59, 304, 410
CviKI_1 RGCY 5 cut(s) 27, 39, 59, 304, 410
CviQI GTAC 2 cut(s) 157, 256
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 145, 317, 464
DpnII GATC 3 cut(s) 143, 315, 462
Eam1104I CTCTTC 2 cut(s) 236, 311
EarI CTCTTC 2 cut(s) 236, 311
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 41, 61
Eco31I GGTCTC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 41, 61
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 8 cut(s) 95, 132, 255, 289, 316, 367, 438, 463
FaqI GGGAC 1 cut(s) 305
FatI CATG 8 cut(s) 91, 128, 251, 285, 312, 363, 434, 459
Fnu4HI GCNGC 2 cut(s) 109, 401
FokI GGATG 2 cut(s) 182, 212
FriOI GRGCYC 2 cut(s) 41, 61
Fsp4HI GCNGC 2 cut(s) 109, 401
GluI GCNGC 2 cut(s) 109, 401
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 386, 411
HgaI GACGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 8 cut(s) 95, 132, 255, 289, 316, 367, 438, 463
HinfI GANTC 6 cut(s) 173, 246, 269, 292, 328, 395
HpaII CCGG 2 cut(s) 386, 411
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 313, 460
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 344, 434
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 490
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 8 cut(s) 95, 132, 255, 289, 316, 367, 438, 463
Kzo9I GATC 3 cut(s) 143, 315, 462
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 7 cut(s) 166, 281, 342, 377, 399, 424, 485
Lsp1109I GCAGC 2 cut(s) 120, 387
MaeII ACGT 1 cut(s) 490
MalI GATC 3 cut(s) 145, 317, 464
MboI GATC 3 cut(s) 143, 315, 462
MboII GAAGA 7 cut(s) 138, 208, 223, 226, 293, 298, 468
MhlI GDGCHC 2 cut(s) 41, 61
MlyI GAGTC 3 cut(s) 278, 286, 389
MnlI CCTC 5 cut(s) 128, 210, 239, 320, 407
MspI CCGG 2 cut(s) 386, 411
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 3 cut(s) 143, 315, 462
NlaIII CATG 8 cut(s) 95, 132, 255, 289, 316, 367, 438, 463
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 2 cut(s) 367, 438
PagI TCATGA 2 cut(s) 312, 459
PciSI GCTCTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 173, 246, 328
PkrI GCNGC 2 cut(s) 110, 402
PleI GAGTC 3 cut(s) 277, 286, 389
PpsI GAGTC 3 cut(s) 277, 286, 389
PshAI GACNNNNGTC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 41
Psp1406I AACGTT 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 26
RsaI GTAC 2 cut(s) 158, 257
RsaNI GTAC 2 cut(s) 157, 256
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 311
SatI GCNGC 2 cut(s) 109, 401
Sau3AI GATC 3 cut(s) 143, 315, 462
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 3 cut(s) 278, 286, 389
SduI GDGCHC 2 cut(s) 41, 61
SetI ASST 5 cut(s) 41, 210, 300, 306, 493
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 1 cut(s) 493
TaqI TCGA 3 cut(s) 6, 142, 279
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 3 cut(s) 173, 246, 328
TscAI CASTG 1 cut(s) 353
TseI GCWGC 2 cut(s) 108, 400
TspDTI ATGAA 3 cut(s) 80, 208, 226
TspGWI ACGGA 2 cut(s) 262, 411
TspRI CASTG 1 cut(s) 353
XceI RCATGY 2 cut(s) 367, 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.