RLG00000036934

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
86664306 .. 86664677
372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036934

Sequence Viewer

Length: 372 bp
ATGGCGAGGTACTACAACGACTACTATTCTTACTGGGATTACTTTCCCCCTCTCCAACTTTGCTTCTTTATCTCCATCCTCTTCTTCATCTTGGGCTTTACATGGTACATAAACTACGAGTCCATGTTCGAGGACATGATGTTTCAGTTCAAGCTCTTCTTCCTGCTCATCCCCCTAATTCTGCTACTCGTCGTTCACTTCTTGTCGGGTGGTATATCGTTTTTGCTGCCGTACCCGGAGCAGGACTCGCTGCACAGAGCAGGAGGGTCTCCGACTCCGTGGGGTGTCGGATTTTTGCTGGTGTTCCTGTTGTTCATGATCTCTTACCAGTCTTCTTTCCATGAACGTTGGTTTCCCTTATACAGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.86

Weight (kDa)

5.37

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31940
fragaria_vesca FvH4_3g44730
malus_domestica MD03G1010800.v1.1 MD11G1012600.v1.1
prunus_persica Prupe.2G001900_v2.0.a1 Prupe.6G010700_v2.0.a1
pyrus_communis pycom03g00960 pycom11g00820
rosa_chinensis RchiOBHm_Chr5g0081431
rosa_laevigata RLG00000036934
rosa_roxburghii Rroxscaffold_1G00002120
rosa_samantha Rh5DG561900
rosa_wichuraiana Rw5G049080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 346
AfaI GTAC 3 cut(s) 11, 107, 233
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 226, 250
AsuC2I CCSGG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 213, 237
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 214
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 273
BisI GCNGC 2 cut(s) 227, 251
BlsI GCNGC 2 cut(s) 228, 252
Bme1390I CCNGG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 38, 328
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 75, 168
BseLI CCNNNNNNNGG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 38, 328
BseXI GCAGC 2 cut(s) 213, 237
BsgI GTGCAG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 318
BspHI TCATGA 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 38, 328
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 86, 161
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 75, 168
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 213, 237
BstV2I GAAGAC 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 2 cut(s) 75, 168
CciI TCATGA 1 cut(s) 315
Csp6I GTAC 3 cut(s) 10, 106, 232
CviAII CATG 5 cut(s) 102, 124, 136, 316, 341
CviJI RGCY 2 cut(s) 96, 154
CviKI_1 RGCY 2 cut(s) 96, 154
CviQI GTAC 3 cut(s) 10, 106, 232
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 86, 161
EarI CTCTTC 2 cut(s) 86, 161
Eco31I GGTCTC 1 cut(s) 273
FaeI CATG 5 cut(s) 105, 127, 139, 319, 344
FaiI YATR 8 cut(s) 103, 110, 125, 137, 215, 317, 342, 361
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 5 cut(s) 101, 123, 135, 315, 340
Fnu4HI GCNGC 2 cut(s) 227, 251
FokI GGATG 2 cut(s) 62, 155
Fsp4HI GCNGC 2 cut(s) 227, 251
GluI GCNGC 2 cut(s) 227, 251
HapII CCGG 1 cut(s) 236
Hin1II CATG 5 cut(s) 105, 127, 139, 319, 344
HinfI GANTC 3 cut(s) 119, 245, 274
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 273, 290
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 5 cut(s) 105, 127, 139, 319, 344
Kzo9I GATC 1 cut(s) 318
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 8 cut(s) 19, 176, 227, 246, 249, 284, 320, 341
Lsp1109I GCAGC 2 cut(s) 213, 237
MaeII ACGT 1 cut(s) 346
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 5 cut(s) 73, 76, 148, 151, 324
MluCI AATT 1 cut(s) 177
MlyI GAGTC 3 cut(s) 128, 239, 268
MmeI TCCRAC 3 cut(s) 79, 268, 296
MnlI CCTC 4 cut(s) 60, 89, 124, 257
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 236
NdeII GATC 1 cut(s) 318
NlaIII CATG 5 cut(s) 105, 127, 139, 319, 344
PagI TCATGA 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 228, 252
PleI GAGTC 3 cut(s) 127, 239, 268
PpsI GAGTC 3 cut(s) 127, 239, 268
Psp1406I AACGTT 1 cut(s) 346
RsaI GTAC 3 cut(s) 11, 107, 233
RsaNI GTAC 3 cut(s) 10, 106, 232
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 2 cut(s) 227, 251
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 3 cut(s) 128, 239, 268
ScrFI CCNGG 1 cut(s) 236
SetI ASST 3 cut(s) 11, 156, 349
Sse9I AATT 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 177
TseI GCWGC 2 cut(s) 226, 250
TspDTI ATGAA 3 cut(s) 76, 304, 357
TspGWI ACGGA 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.