Rw5G049080

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
85120353 .. 85121189
837 bp
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UTR
Exon/CDS
Intron
Rw5G049080.1

Sequence Viewer

Length: 378 bp
ATGGCGAGGTACTACAACGACTACTATTCTTACTGGGATTACTTTCCCCCTCTCCAACTTTGCTTCTTTATCTCCATCCTCTTCTTCATCTTGGGCTTTACATGGTACATAAACTACGAGTCCATGTTCGAGGACATGATGTTTCAGGTCAAGCTCTTCTTCCTGCTCATCCCCCTAATTCTGCTACTCGTCGTTCACTTCTTGTCGGGTGGTATATCGTTTTTGCTGCCGTACCCTGAGCAGGACTCGCTGCACAGAGTCGGAGCCGGAGGGTCTCCGACTCCGTGGGGTGTCGGATTTTTGCTCGTGTTCCTTTTGTTCATGATCTCTTACCAGTCTTCTTTCCATGAACGTTGGTTTCCCTTATACAGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.97

Weight (kDa)

5.37

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31940
fragaria_vesca FvH4_3g44730
malus_domestica MD03G1010800.v1.1 MD11G1012600.v1.1
prunus_persica Prupe.2G001900_v2.0.a1 Prupe.6G010700_v2.0.a1
pyrus_communis pycom03g00960 pycom11g00820
rosa_chinensis RchiOBHm_Chr5g0081431
rosa_laevigata RLG00000036934
rosa_roxburghii Rroxscaffold_1G00002120
rosa_samantha Rh5DG561900
rosa_wichuraiana Rw5G049080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 352
AfaI GTAC 3 cut(s) 11, 107, 233
AfiI CCNNNNNNNGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 226, 250
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 213, 237
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 279
BisI GCNGC 2 cut(s) 227, 251
BlsI GCNGC 2 cut(s) 228, 252
BmiI GGNNCC 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 38, 334
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 75, 168
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 38, 334
BseXI GCAGC 2 cut(s) 213, 237
BsgI GTGCAG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 279
BsrI ACTGG 2 cut(s) 38, 334
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 86, 161
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 75, 168
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 213, 237
BstV2I GAAGAC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 75, 168
CciI TCATGA 1 cut(s) 321
Csp6I GTAC 3 cut(s) 10, 106, 232
CviAII CATG 5 cut(s) 102, 124, 136, 322, 347
CviJI RGCY 3 cut(s) 96, 154, 266
CviKI_1 RGCY 3 cut(s) 96, 154, 266
CviQI GTAC 3 cut(s) 10, 106, 232
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 86, 161
EarI CTCTTC 2 cut(s) 86, 161
Eco31I GGTCTC 1 cut(s) 279
FaeI CATG 5 cut(s) 105, 127, 139, 325, 350
FaiI YATR 8 cut(s) 103, 110, 125, 137, 215, 323, 348, 367
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 5 cut(s) 101, 123, 135, 321, 346
Fnu4HI GCNGC 2 cut(s) 227, 251
FokI GGATG 2 cut(s) 62, 155
Fsp4HI GCNGC 2 cut(s) 227, 251
GluI GCNGC 2 cut(s) 227, 251
HapII CCGG 1 cut(s) 267
Hin1II CATG 5 cut(s) 105, 127, 139, 325, 350
HinfI GANTC 4 cut(s) 119, 245, 258, 280
HpaII CCGG 1 cut(s) 267
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 263, 279, 296
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 5 cut(s) 105, 127, 139, 325, 350
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 7 cut(s) 19, 131, 176, 227, 249, 280, 347
Lsp1109I GCAGC 2 cut(s) 213, 237
MaeII ACGT 1 cut(s) 352
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 5 cut(s) 73, 76, 148, 151, 330
MluCI AATT 1 cut(s) 177
MlyI GAGTC 4 cut(s) 128, 239, 267, 274
MmeI TCCRAC 4 cut(s) 79, 241, 274, 302
MnlI CCTC 4 cut(s) 60, 89, 124, 263
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 324
NlaIII CATG 5 cut(s) 105, 127, 139, 325, 350
NlaIV GGNNCC 1 cut(s) 265
PagI TCATGA 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 228, 252
PleI GAGTC 4 cut(s) 127, 239, 266, 274
PpsI GAGTC 4 cut(s) 127, 239, 266, 274
Psp1406I AACGTT 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 265
RsaI GTAC 3 cut(s) 11, 107, 233
RsaNI GTAC 3 cut(s) 10, 106, 232
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 2 cut(s) 227, 251
Sau3AI GATC 1 cut(s) 324
SchI GAGTC 4 cut(s) 128, 239, 267, 274
SetI ASST 4 cut(s) 11, 150, 156, 355
Sse9I AATT 1 cut(s) 177
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 177
TseI GCWGC 2 cut(s) 226, 250
TspDTI ATGAA 3 cut(s) 76, 310, 363
TspGWI ACGGA 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.