MD11G1012600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017072
Physical Location & Seq
Forward (+)
921909 .. 922274
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1012600.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCTAGGGACTACAACTATTATTCTTACTGGGACTACTTCTCCATCCCTCTCCACCTTTGTTTCTTCATTTCCATCCTCGTCTTCATCTTGGGGTTCACATGGTACATAAACTACGAGTCCATGTTTGAGGACTTGATGACACAAGTCAAACTCTTCCTCATGATTGTTCCAATCATTCTTCTACTCGTCGTCCACTGCTTATCGGGTGGGTTGTCGTTCTTCTTGCCGCTGCCGGAGCAGGATTCACTTCATAGAGCCGGAGGGTCTCCATGGGGCGTTGGACTCGTGCTTGTGTTCCTTTTGATCATGATCTCTTACCAGTCTTCTTTCCAGGAACGTTGGTTTCCCTTACTGAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.25

Weight (kDa)

5.37

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31940
fragaria_vesca FvH4_3g44730
malus_domestica MD03G1010800.v1.1 MD11G1012600.v1.1
prunus_persica Prupe.2G001900_v2.0.a1 Prupe.6G010700_v2.0.a1
pyrus_communis pycom03g00960 pycom11g00820
rosa_chinensis RchiOBHm_Chr5g0081431
rosa_laevigata RLG00000036934
rosa_roxburghii Rroxscaffold_1G00002120
rosa_samantha Rh5DG561900
rosa_wichuraiana Rw5G049080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AclI AACGTT 1 cut(s) 340
AfaI GTAC 1 cut(s) 107
AjnI CCWGG 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 232
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 76, 318
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 53, 83
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 230, 233
BlsI GCNGC 2 cut(s) 231, 234
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 76, 318
BsaBI GATNNNNATC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 2 cut(s) 35, 322
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 45, 75
BseJI GATNNNNATC 1 cut(s) 311
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 35, 322
BseXI GCAGC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 236, 261
BslFI GGGAC 2 cut(s) 23, 47
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 23, 47
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 306, 312
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 348
BspHI TCATGA 2 cut(s) 162, 309
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 35, 322
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 306, 312
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 45, 75
BstKTI GATC 2 cut(s) 309, 315
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 306, 312
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 76, 318
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 45, 75
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
CciI TCATGA 2 cut(s) 162, 309
Csp6I GTAC 1 cut(s) 106
CviAII CATG 5 cut(s) 102, 124, 163, 273, 310
CviJI RGCY 2 cut(s) 5, 260
CviKI_1 RGCY 2 cut(s) 5, 260
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 356
DpnI GATC 2 cut(s) 308, 314
DpnII GATC 2 cut(s) 306, 312
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 5 cut(s) 105, 127, 166, 276, 313
FaiI YATR 7 cut(s) 103, 110, 125, 164, 255, 274, 311
FaqI GGGAC 2 cut(s) 23, 47
FatI CATG 5 cut(s) 101, 123, 162, 272, 309
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 230, 233
FokI GGATG 2 cut(s) 32, 62
Fsp4HI GCNGC 2 cut(s) 230, 233
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 230, 233
HapII CCGG 2 cut(s) 236, 261
Hin1II CATG 5 cut(s) 105, 127, 166, 276, 313
HinfI GANTC 3 cut(s) 119, 245, 285
HpaII CCGG 2 cut(s) 236, 261
Hpy166II GTNNAC 2 cut(s) 99, 196
Hpy188III TCNNGA 2 cut(s) 163, 310
Hpy8I GTNNAC 2 cut(s) 99, 196
Hpy99I CGWCG 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 105, 127, 166, 276, 313
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 306, 312
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 16, 227, 249, 274, 320, 335, 347
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 340
MalI GATC 2 cut(s) 308, 314
MboI GATC 2 cut(s) 306, 312
MboII GAAGA 6 cut(s) 58, 76, 148, 173, 214, 318
MlyI GAGTC 2 cut(s) 128, 279
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 5 cut(s) 60, 89, 124, 170, 257
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 2 cut(s) 236, 261
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 272
NdeII GATC 2 cut(s) 306, 312
NlaIII CATG 5 cut(s) 105, 127, 166, 276, 313
PagI TCATGA 2 cut(s) 162, 309
PfeI GAWTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 2 cut(s) 231, 234
PleI GAGTC 2 cut(s) 127, 279
PpsI GAGTC 2 cut(s) 127, 279
PshAI GACNNNNGTC 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SatI GCNGC 2 cut(s) 230, 233
Sau3AI GATC 2 cut(s) 306, 312
SchI GAGTC 2 cut(s) 128, 279
ScrFI CCNGG 1 cut(s) 335
SetI ASST 2 cut(s) 60, 343
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 343
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 1 cut(s) 203
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 58, 76, 242
TspRI CASTG 1 cut(s) 203
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.