FvH4_4g05643

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017282
Physical Location & Seq
Reverse (-)
4986807 .. 4987491
685 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05643.t1

Sequence Viewer

Length: 519 bp
ATGTGGTCACCAGCTTTTTCTATCAACAAATTACAAAATAATTACTTACAGAAGGAGATTAGATTTTCTCAACGGCAAATTTGTAAGAGTCGCCTTATCAAATTCAACATGTTGGGCAACTGTGACCGCTTGATGCTAATCCGTGTGATCTTCTTCACCTTGACCATTTCCATCAGTTCTTCTTCAGCAAGATTTTCCGACGTCCAACTTCCGGTGCTTATTTTCATTAATGGATTGTCCCCAAACTCAGAGCCATGGGAGCTTAGATGCGGGAACCAGAGCACTAATGAACACCATGCGTATCTTAGAAATGGTGCGCAGGATGGATGGAGCATCAACAAGAACGTTGGTTACAGCTGCGATGCACTGTGGGGAAATCAGTTTGCTTATTGGAAAGTTTATCAGCCTGGTGAAGACTCCGGCAAAGCCATAGTGTTCTGGTTGGCTAGAGACGATGGTTTTTATCGCAGCGTGGATAAATCTACATGGACGAGAGAGAAAGAATGGGAACATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

173

Amino Acids

20.1

Weight (kDa)

8.69

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 74 - 169 2.7e-08 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05643
rosa_chinensis RchiOBHm_Chr4g0396821
rosa_laevigata RLG00000009502
rosa_multiflora Rmu_sc0000487.1_g000053
rosa_roxburghii Rroxscaffold_5G00341660
rosa_rugosa Rorug03G0347500
rosa_samantha Rh4AG072000 Rh4AG072800 Rh4AG074900 Rh4BG069900 Rh4CG078200 Rh4DG067700
rosa_wichuraiana Rw4G005910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 318
AciI CCGC 2 cut(s) 127, 270
AclI AACGTT 1 cut(s) 345
AcsI RAATTY 2 cut(s) 78, 101
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 3 cut(s) 14, 262, 357
AluI AGCT 3 cut(s) 14, 262, 357
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 357, 468
ApoI RAATTY 2 cut(s) 78, 101
AseI ATTAAT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 148, 422
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 344, 480
BccI CCATC 4 cut(s) 179, 317, 321, 449
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 358, 469
BlsI GCNGC 2 cut(s) 359, 470
Bme1390I CCNGG 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 4 cut(s) 123, 257, 342, 352
BpiI GAAGAC 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 328, 332
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 344, 480
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 2 cut(s) 212, 420
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 127, 270
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 122, 369
BstACI GRCGYC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 247, 263, 305
BstDSI CCRYGG 1 cut(s) 254
BstEII GGTNACC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 328, 332
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 344, 480
BstV2I GAAGAC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 328, 332
BtsIMutI CAGTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 319
CviAII CATG 5 cut(s) 109, 255, 296, 486, 512
CviJI RGCY 7 cut(s) 14, 253, 262, 357, 406, 428, 446
CviKI_1 RGCY 7 cut(s) 14, 253, 262, 357, 406, 428, 446
DdeI CTNAG 3 cut(s) 247, 263, 305
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 5 cut(s) 112, 258, 299, 489, 515
FaiI YATR 6 cut(s) 110, 256, 297, 431, 487, 513
FaqI GGGAC 1 cut(s) 223
FatI CATG 5 cut(s) 108, 254, 295, 485, 511
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 358, 469
FokI GGATG 2 cut(s) 335, 339
Fsp4HI GCNGC 2 cut(s) 358, 469
FspBI CTAG 1 cut(s) 447
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 2 cut(s) 358, 469
HapII CCGG 2 cut(s) 212, 420
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 5 cut(s) 112, 258, 299, 489, 515
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 2 cut(s) 88, 416
HpaII CCGG 2 cut(s) 212, 420
HphI GGTGA 2 cut(s) 148, 422
Hpy188I TCNGA 2 cut(s) 199, 250
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 122, 369
HpyCH4IV ACGT 2 cut(s) 201, 345
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 247, 263, 305
HpySE526I ACGT 2 cut(s) 201, 345
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 5 cut(s) 112, 258, 299, 489, 515
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 259, 330
LpnPI CCDG 8 cut(s) 24, 225, 290, 305, 393, 420, 424, 433
Lsp1109I GCAGC 2 cut(s) 344, 480
LweI GCATC 4 cut(s) 123, 257, 342, 352
MaeI CTAG 1 cut(s) 447
MaeII ACGT 2 cut(s) 201, 345
MaeIII GTNAC 3 cut(s) 6, 122, 350
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 5 cut(s) 142, 145, 171, 174, 425
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 4 cut(s) 29, 40, 78, 101
MlyI GAGTC 2 cut(s) 97, 410
MmeI TCCRAC 2 cut(s) 222, 229
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 2 cut(s) 212, 420
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 254
NdeII GATC 1 cut(s) 147
NlaIII CATG 5 cut(s) 112, 258, 299, 489, 515
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 6, 122
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 1 cut(s) 112
PciI ACATGT 1 cut(s) 108
PkrI GCNGC 2 cut(s) 359, 470
PleI GAGTC 2 cut(s) 96, 410
PpsI GAGTC 2 cut(s) 96, 410
PscI ACATGT 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 406
PspEI GGTNACC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
PvuII CAGCTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 358, 469
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 2 cut(s) 97, 410
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 284
SetI ASST 6 cut(s) 16, 161, 204, 264, 348, 359
SfaNI GCATC 4 cut(s) 123, 257, 342, 352
Sse9I AATT 4 cut(s) 29, 40, 78, 101
SsiI CCGC 2 cut(s) 127, 270
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 122, 369
TaiI ACGT 2 cut(s) 204, 348
TasI AATT 4 cut(s) 29, 40, 78, 101
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 2 cut(s) 6, 122
TseI GCWGC 2 cut(s) 357, 468
Tsp45I GTSAC 2 cut(s) 6, 122
TspDTI ATGAA 2 cut(s) 214, 303
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 372
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 2 cut(s) 78, 101
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 447
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.