Rorug03G0347500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017282
Physical Location & Seq
Forward (+)
42229128 .. 42230892
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0347500.1

Sequence Viewer

Length: 684 bp
ATGGCCGAGGCCTTGGCGAAGCTCACCAACTCTCTCTACTCCGACTCCAAGCCCATCACCGCCACTGATCTCTTGTTTCGGTTGCGCACCGACTCCGACTCCGACTCCATCAGACCGGGTTTCCAGAACCTTCTCCTGATTCTAAAACGCGGCGTCGAGGCCGACGCAGACGGAAAGCTAGGGCTCCAATCATGGACAGATTCGCAAATTCAAGCTGTATATTCCCTCGCCTACGCCGTTGTCTCCTCTCGATCTCTCTCAGTGGAGCAAGCGGAAGCAATAATTGTGGCCACTGTGCAACTGTCTCTGGAGTTTGCTGTATGTTATCTGGAAAGATCATATTTCGGCAGCGCAGACATGAGTATTCAGAGTGTGATAAAGACTGCCTTGGTTCTTTCTTGCAGAAATTTAGTAGAGAGTTATTCCTCATCAGCTGATAATATAAGTAGAGTCGCAACATGCTTAAAAATAAATTATCCATGTTCTGCTTCGGGAGCAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATCGGTGGGGTTAAGTATCAAGTTGATACAGAACAAAAAGGTGCTTCATTCTATTACTCATCTCAGAACCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATAATGATGTTGATGCAGTACTGGTAAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

227

Amino Acids

24.65

Weight (kDa)

5.18

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05643
rosa_chinensis RchiOBHm_Chr4g0396821
rosa_laevigata RLG00000009502
rosa_multiflora Rmu_sc0000487.1_g000053
rosa_roxburghii Rroxscaffold_5G00341660
rosa_rugosa Rorug03G0347500
rosa_samantha Rh4AG072000 Rh4AG072800 Rh4AG074900 Rh4BG069900 Rh4CG078200 Rh4DG067700
rosa_wichuraiana Rw4G005910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 86
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 60, 150, 272
AcoI YGGCCR 2 cut(s) 3, 288
AcsI RAATTY 2 cut(s) 207, 406
AcuI CTGAAG 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 634, 669
AfiI CCNNNNNNNGG 1 cut(s) 619
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 4 cut(s) 22, 178, 215, 434
AluI AGCT 4 cut(s) 22, 178, 215, 434
Alw26I GTCTC 2 cut(s) 247, 309
AoxI GGCC 5 cut(s) 3, 9, 159, 288, 621
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 207, 406
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 87, 353
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 16, 49
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 360
BccI CCATC 2 cut(s) 62, 116
BceAI ACGGC 1 cut(s) 221
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 247, 309
BfaI CTAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 151, 349
BlsI GCNGC 2 cut(s) 152, 350
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 652
BmuI ACTGGG 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 6, 12, 387
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 83, 89, 113, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 2 cut(s) 623, 675
Bse8I GATNNNNATC 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 6, 12, 387
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMII CTCAG 2 cut(s) 273, 620
BseNI ACTGG 2 cut(s) 623, 675
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 5 cut(s) 5, 11, 161, 290, 623
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 2 cut(s) 247, 309
BsnI GGCC 5 cut(s) 5, 11, 161, 290, 623
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 67, 251, 335
BspACI CCGC 3 cut(s) 60, 150, 272
BspANI GGCC 5 cut(s) 5, 11, 161, 290, 623
BspCNI CTCAG 2 cut(s) 272, 619
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 623, 675
BssECI CCNNGG 3 cut(s) 6, 12, 387
BssMI GATC 3 cut(s) 67, 251, 335
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 12, 387
Bst4CI ACNGT 2 cut(s) 295, 303
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 259, 606
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 87, 353
BstKTI GATC 3 cut(s) 70, 254, 338
BstMAI GTCTC 2 cut(s) 247, 309
BstMBI GATC 3 cut(s) 67, 251, 335
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 360
BsuRI GGCC 5 cut(s) 5, 11, 161, 290, 623
BtsIMutI CAGTG 3 cut(s) 63, 267, 291
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 2 cut(s) 87, 353
Cfr13I GGNCC 1 cut(s) 621
CseI GACGC 2 cut(s) 142, 173
Csp6I GTAC 2 cut(s) 633, 668
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 5 cut(s) 192, 358, 459, 480, 646
CviQI GTAC 2 cut(s) 633, 668
DdeI CTNAG 2 cut(s) 259, 606
DpnI GATC 3 cut(s) 69, 253, 337
DpnII GATC 3 cut(s) 67, 251, 335
EaeI YGGCCR 2 cut(s) 3, 288
Eco130I CCWWGG 2 cut(s) 12, 387
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 12, 387
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 12, 387
FaeI CATG 5 cut(s) 195, 361, 462, 483, 649
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 5 cut(s) 191, 357, 458, 479, 645
Fnu4HI GCNGC 2 cut(s) 151, 349
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 151, 349
FspBI CTAG 1 cut(s) 179
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 2 cut(s) 86, 352
GluI GCNGC 2 cut(s) 151, 349
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 5 cut(s) 5, 11, 161, 290, 623
HapII CCGG 1 cut(s) 116
HgaI GACGC 2 cut(s) 142, 173
HhaI GCGC 2 cut(s) 87, 353
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 5 cut(s) 195, 361, 462, 483, 649
Hin6I GCGC 2 cut(s) 85, 351
HinP1I GCGC 2 cut(s) 85, 351
HinfI GANTC 7 cut(s) 44, 92, 98, 104, 139, 200, 450
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 16, 49
Hpy188I TCNGA 6 cut(s) 43, 97, 103, 113, 369, 609
Hpy188III TCNNGA 6 cut(s) 124, 136, 249, 308, 329, 492
Hpy99I CGWCG 2 cut(s) 158, 167
HpyAV CCTTC 3 cut(s) 140, 525, 634
HpyCH4III ACNGT 2 cut(s) 295, 303
HpyCH4V TGCA 3 cut(s) 298, 402, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 259, 606
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 5 cut(s) 195, 361, 462, 483, 649
HspAI GCGC 2 cut(s) 85, 351
Kzo9I GATC 3 cut(s) 67, 251, 335
LmnI GCTCC 3 cut(s) 189, 265, 494
LpnPI CCDG 9 cut(s) 129, 137, 149, 293, 314, 604, 621, 626, 656
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 179
MalI GATC 3 cut(s) 69, 253, 337
MboI GATC 3 cut(s) 67, 251, 335
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 5 cut(s) 207, 282, 406, 472, 520
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 5 cut(s) 38, 86, 92, 98, 459
MmeI TCCRAC 3 cut(s) 66, 120, 126
MnlI CCTC 4 cut(s) 151, 236, 256, 436
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 464, 519, 555
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 117
NdeII GATC 3 cut(s) 67, 251, 335
NlaIII CATG 5 cut(s) 195, 361, 462, 483, 649
NlaIV GGNNCC 1 cut(s) 185
NmeAIII GCCGAG 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 86
NspI RCATGY 1 cut(s) 462
PceI AGGCCT 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 2 cut(s) 139, 200
PkrI GCNGC 2 cut(s) 152, 350
PleI GAGTC 5 cut(s) 38, 86, 92, 98, 458
PpsI GAGTC 5 cut(s) 38, 86, 92, 98, 458
PshBI ATTAAT 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 634, 669
RsaNI GTAC 2 cut(s) 633, 668
SaqAI TTAA 3 cut(s) 464, 519, 555
SatI GCNGC 2 cut(s) 151, 349
Sau3AI GATC 3 cut(s) 67, 251, 335
Sau96I GGNCC 1 cut(s) 621
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 5 cut(s) 38, 86, 92, 98, 459
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 24, 132, 180, 217, 436, 586
SfaNI GCATC 1 cut(s) 652
Sse9I AATT 5 cut(s) 207, 282, 406, 472, 520
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 3 cut(s) 60, 150, 272
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 2 cut(s) 12, 387
TaaI ACNGT 2 cut(s) 295, 303
TaqI TCGA 2 cut(s) 156, 250
TasI AATT 5 cut(s) 207, 282, 406, 472, 520
TatI WGTACW 2 cut(s) 632, 667
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 139, 200
Tru1I TTAA 3 cut(s) 464, 519, 555
Tru9I TTAA 3 cut(s) 464, 519, 555
TscAI CASTG 3 cut(s) 70, 267, 298
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 579, 634
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 3 cut(s) 70, 267, 298
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 2 cut(s) 207, 406
XceI RCATGY 1 cut(s) 462
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.