FvH4_4g05650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0019220
Physical Location & Seq
Reverse (-)
4988438 .. 4988842
405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05650.t1

Sequence Viewer

Length: 405 bp
ATGGTTTCTCGGAGCCTCAGTTTGTTCCTTCTCATTCCACTGTTCTCATTCACTTCGATCTTAGGCTCATCTGAAGGGCTCGAGTATAAACCCTTACCCAGAGTCCACATTATCAATGCCCTGCCTCCGAAGTCGGAGCCTGCAAATATAGAGTGCAAGTCAAGAAATACAAACGTCGGTGAACGTGACCTGAATGTGGGTGATGACTTCACATGGAACGCCAAGGAAAGCTCTCTGTATTACTGCCGAGCATTCTGGGGTAGATTTTTCTCATCCTGGCACGCAGTTCAGCCTAAGCGAGATAGTGGCAAAGCAGCAGTGTTTTGGCTGGTGAAAGAACATGGATTCTTTCTTAGCTGGGATAATTCCACTTGGGTGAAAAAGTCTGTTTGGCAAACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.43

Weight (kDa)

8.98

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 131 1.4e-12 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05650
rosa_chinensis RchiOBHm_Chr4g0396831
rosa_multiflora Rmu_sc0000487.1_g000056
rosa_roxburghii Rroxscaffold_5G00341670
rosa_samantha Rh4AG074800 Rh4BG070000 Rh4DG067800
rosa_wichuraiana Rw4G005920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 196
AjnI CCWGG 1 cut(s) 275
AleI CACNNNNGTG 1 cut(s) 374
AluBI AGCT 2 cut(s) 231, 357
AluI AGCT 2 cut(s) 231, 357
Ama87I CYCGRG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 191, 212, 343, 388
AvaI CYCGRG 1 cut(s) 80
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 277
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 14, 138
BmrFI CCNGG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 14, 138
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 141, 282
BstDEI CTNAG 4 cut(s) 17, 61, 294, 353
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 38, 324
Cac8I GCNNGC 2 cut(s) 141, 282
CviAII CATG 2 cut(s) 213, 341
CviJI RGCY 8 cut(s) 15, 66, 79, 139, 231, 292, 328, 357
CviKI_1 RGCY 8 cut(s) 15, 66, 79, 139, 231, 292, 328, 357
DdeI CTNAG 4 cut(s) 17, 61, 294, 353
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 216, 344
FaiI YATR 4 cut(s) 87, 149, 214, 342
FatI CATG 2 cut(s) 212, 340
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 361
Hin1II CATG 2 cut(s) 216, 344
HinfI GANTC 2 cut(s) 102, 345
HphI GGTGA 4 cut(s) 191, 212, 343, 388
Hpy166II GTNNAC 2 cut(s) 106, 182
Hpy188I TCNGA 4 cut(s) 12, 73, 129, 136
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 2 cut(s) 106, 182
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 38, 68
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 2 cut(s) 174, 184
HpyCH4V TGCA 2 cut(s) 143, 156
HpyF3I CTNAG 4 cut(s) 17, 61, 294, 353
HpySE526I ACGT 2 cut(s) 174, 184
Hsp92II CATG 2 cut(s) 216, 344
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 12, 136
LpnPI CCDG 9 cut(s) 112, 134, 153, 203, 241, 262, 289, 314, 343
Lsp1109I GCAGC 1 cut(s) 326
MaeII ACGT 2 cut(s) 174, 184
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 2 cut(s) 26, 135
MslI CAYNNNNRTG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 277
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 216, 344
NlaIV GGNNCC 2 cut(s) 14, 138
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 80
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 14, 138
PspXI VCTCGAGB 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 374
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 177, 187, 192, 233, 359
Sfr274I CTCGAG 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 2 cut(s) 177, 187
TaqI TCGA 2 cut(s) 56, 81
TasI AATT 1 cut(s) 364
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 2 cut(s) 45, 324
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 185
TspRI CASTG 2 cut(s) 45, 324
XhoI CTCGAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.