Rh4AG074800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019220
Physical Location & Seq
Forward (+)
15292116 .. 15300912
8797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG074800.1

Sequence Viewer

Length: 381 bp
ATGGCTTTTGAATCAATACTGTTCTCATTCACTTCGATTTTATGCTCATCCGAAGAGCTTGAATATAAATTCTTACTCAGAGTACATGTTATCAATGCCCTGCCTCAGAATTCGAAGCCTGCGAATATAGAATGCAAGTCGACAGATACATATATTGGCGAACGCAACCTGAATGTTGGTGAAGACTTCACATGGAATGCCAAGGAAAGCTCTCTGTATTACTGTCGAGCATTCTGGGGTAGATTTTTTGCATCCTGGCATGCAGTTCAGCCTAAGCGAGATGATGGTAAAGCAGCAGTGTTTTGGCTGGTGAACGAACATGGGTTCTTTCTTAGCTGGGATAATTCCACCTGGGTGAAAAAATTAATGAAATGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

126

Amino Acids

14.72

Weight (kDa)

6.82

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 27 - 119 5.3e-12 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05650
rosa_chinensis RchiOBHm_Chr4g0396831
rosa_multiflora Rmu_sc0000487.1_g000056
rosa_roxburghii Rroxscaffold_5G00341670
rosa_samantha Rh4AG074800 Rh4BG070000 Rh4DG067800
rosa_wichuraiana Rw4G005920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AcsI RAATTY 2 cut(s) 68, 109
AfaI GTAC 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 11, 62
AjnI CCWGG 2 cut(s) 254, 350
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 3 cut(s) 58, 210, 336
AluI AGCT 3 cut(s) 58, 210, 336
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 2 cut(s) 68, 109
AseI ATTAAT 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 191, 322, 367
AsuII TTCGAA 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 256, 352
BfmI CTRYAG 1 cut(s) 377
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 256, 352
BmrFI CCNGG 2 cut(s) 256, 352
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 201, 351
BseBI CCWGG 2 cut(s) 256, 352
BseDI CCNNGG 2 cut(s) 201, 351
BseGI GGATG 2 cut(s) 47, 251
BseMII CTCAG 2 cut(s) 91, 119
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 336
BsmI GAATGC 3 cut(s) 137, 202, 230
Bsp119I TTCGAA 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 90, 118
BspQI GCTCTTC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 201, 351
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 256, 352
Bst4CI ACNGT 2 cut(s) 21, 224
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 120, 261
BstDEI CTNAG 4 cut(s) 77, 105, 273, 332
BstF5I GGATG 2 cut(s) 47, 251
BstNI CCWGG 2 cut(s) 256, 352
BstNSI RCATGY 2 cut(s) 89, 263
BstSCI CCNGG 2 cut(s) 254, 350
BstSFI CTRYAG 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 47, 251
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 120, 261
Csp6I GTAC 1 cut(s) 83
CviAII CATG 4 cut(s) 86, 192, 260, 320
CviJI RGCY 7 cut(s) 5, 58, 118, 210, 271, 307, 336
CviKI_1 RGCY 7 cut(s) 5, 58, 118, 210, 271, 307, 336
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 4 cut(s) 77, 105, 273, 332
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 254, 350
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 4 cut(s) 89, 195, 263, 323
FatI CATG 4 cut(s) 85, 191, 259, 319
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 2 cut(s) 34, 238
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 340
Hin1II CATG 4 cut(s) 89, 195, 263, 323
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 11
HphI GGTGA 3 cut(s) 191, 322, 367
Hpy166II GTNNAC 2 cut(s) 141, 313
Hpy188I TCNGA 3 cut(s) 52, 80, 108
Hpy8I GTNNAC 2 cut(s) 141, 313
HpyCH4III ACNGT 2 cut(s) 21, 224
HpyCH4V TGCA 3 cut(s) 135, 251, 263
HpyF3I CTNAG 4 cut(s) 77, 105, 273, 332
Hsp92II CATG 4 cut(s) 89, 195, 263, 323
LguI GCTCTTC 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 260
MboII GAAGA 2 cut(s) 65, 194
MluCI AATT 4 cut(s) 68, 109, 343, 362
MnlI CCTC 1 cut(s) 114
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 256, 352
Mva1269I GAATGC 3 cut(s) 137, 202, 230
MvaI CCWGG 2 cut(s) 256, 352
NlaIII CATG 4 cut(s) 89, 195, 263, 323
NspI RCATGY 2 cut(s) 89, 263
NspV TTCGAA 1 cut(s) 113
OliI CACNNNNGTG 1 cut(s) 353
PaeI GCATGC 1 cut(s) 263
PciI ACATGT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 3 cut(s) 137, 202, 230
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 295
PscI ACATGT 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 254, 350
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 2 cut(s) 254, 350
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 353
SalI GTCGAC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 256, 352
SetI ASST 5 cut(s) 60, 171, 212, 338, 353
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 377
SfuI TTCGAA 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 353
SphI GCATGC 1 cut(s) 263
Sse9I AATT 4 cut(s) 68, 109, 343, 362
StyD4I CCNGG 2 cut(s) 254, 350
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 21, 224
TaqI TCGA 4 cut(s) 35, 113, 140, 226
TasI AATT 4 cut(s) 68, 109, 343, 362
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 293
TspRI CASTG 1 cut(s) 303
VspI ATTAAT 1 cut(s) 365
XapI RAATTY 2 cut(s) 68, 109
XceI RCATGY 2 cut(s) 89, 263
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.