RchiOBHm_Chr4g0396831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019220
Physical Location & Seq
Reverse (-)
12927466 .. 12927947
482 bp
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UTR
Exon/CDS
Intron
PRQ36920

Sequence Viewer

Length: 408 bp
ATGCTTTCTCGGAGCCACATTTTCTTCCTTCTCATTCCAGTACTGTTCTCATTCACTTCGATGTTATGCTCATCCGATGAGCTTGAATATAAATTCTTACTCAGAGTACATATTATCAATGCCCTGCCTCAGAATTCGAAGCCTGCGAATATAGAATGCAAGTCGACAGATACATATATTGGCGAACGCAACCTGAATGTTGGTGACGACTTCACATGGAATGCCAAGGAAAGCTCTCTGTATTACTGTCGAGCATTCTGGGGTAGATTTTTTGCATCCTGGCATGCAGTTCAGCCTAAGCGAGATGATGGTAAAGCAGCAGTGTTTTGGCTGGTGAACGAACATGGGTTCTTTCTTAGCTGGGATAATTCCACCTGGGTGAAAAAGTCTGTTTGGGAAACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.84

Weight (kDa)

6.41

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 35 - 132 4.7e-12 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05650
rosa_chinensis RchiOBHm_Chr4g0396831
rosa_multiflora Rmu_sc0000487.1_g000056
rosa_roxburghii Rroxscaffold_5G00341670
rosa_samantha Rh4AG074800 Rh4BG070000 Rh4DG067800
rosa_wichuraiana Rw4G005920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AcsI RAATTY 2 cut(s) 92, 133
AfaI GTAC 2 cut(s) 42, 108
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 2 cut(s) 278, 374
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 3 cut(s) 82, 234, 360
AluI AGCT 3 cut(s) 82, 234, 360
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 92, 133
AsuHPI GGTGA 3 cut(s) 215, 346, 391
AsuII TTCGAA 1 cut(s) 137
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 280, 376
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 280, 376
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 2 cut(s) 280, 376
BmsI GCATC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 225, 375
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 280, 376
BseDI CCNNGG 2 cut(s) 225, 375
BseGI GGATG 2 cut(s) 71, 275
BseMII CTCAG 2 cut(s) 115, 143
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 360
BsmI GAATGC 3 cut(s) 161, 226, 254
Bsp119I TTCGAA 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 114, 142
BspLI GGNNCC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 137
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 225, 375
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 280, 376
Bst4CI ACNGT 2 cut(s) 45, 248
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 144, 285
BstDEI CTNAG 4 cut(s) 101, 129, 297, 356
BstF5I GGATG 2 cut(s) 71, 275
BstNI CCWGG 2 cut(s) 280, 376
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 278, 374
BstV1I GCAGC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 71, 275
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 144, 285
Csp6I GTAC 2 cut(s) 41, 107
CviAII CATG 3 cut(s) 216, 284, 344
CviJI RGCY 7 cut(s) 15, 82, 142, 234, 295, 331, 360
CviKI_1 RGCY 7 cut(s) 15, 82, 142, 234, 295, 331, 360
CviQI GTAC 2 cut(s) 41, 107
DdeI CTNAG 4 cut(s) 101, 129, 297, 356
Eco130I CCWWGG 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 278, 374
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 219, 287, 347
FaiI YATR 9 cut(s) 67, 90, 111, 152, 175, 177, 217, 285, 345
FatI CATG 3 cut(s) 215, 283, 343
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 58, 262
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 364
Hin1II CATG 3 cut(s) 219, 287, 347
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HphI GGTGA 3 cut(s) 215, 346, 391
Hpy166II GTNNAC 2 cut(s) 165, 337
Hpy188I TCNGA 4 cut(s) 12, 76, 104, 132
Hpy8I GTNNAC 2 cut(s) 165, 337
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 45, 248
HpyCH4V TGCA 3 cut(s) 159, 275, 287
HpyF3I CTNAG 4 cut(s) 101, 129, 297, 356
Hsp92II CATG 3 cut(s) 219, 287, 347
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 1 cut(s) 16
MluCI AATT 3 cut(s) 92, 133, 367
MnlI CCTC 1 cut(s) 138
MslI CAYNNNNRTG 2 cut(s) 59, 377
MspR9I CCNGG 2 cut(s) 280, 376
Mva1269I GAATGC 3 cut(s) 161, 226, 254
MvaI CCWGG 2 cut(s) 280, 376
NlaIII CATG 3 cut(s) 219, 287, 347
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 287
NspV TTCGAA 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 377
PaeI GCATGC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 3 cut(s) 161, 226, 254
PkrI GCNGC 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 278, 374
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 2 cut(s) 278, 374
PspN4I GGNNCC 1 cut(s) 14
RsaI GTAC 2 cut(s) 42, 108
RsaNI GTAC 2 cut(s) 41, 107
RseI CAYNNNNRTG 2 cut(s) 59, 377
SalI GTCGAC 1 cut(s) 163
SatI GCNGC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 42
ScrFI CCNGG 2 cut(s) 280, 376
SetI ASST 5 cut(s) 84, 195, 236, 362, 377
SfaNI GCATC 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 59, 377
SphI GCATGC 1 cut(s) 287
Sse9I AATT 3 cut(s) 92, 133, 367
StyD4I CCNGG 2 cut(s) 278, 374
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 45, 248
TaqI TCGA 4 cut(s) 59, 137, 164, 250
TasI AATT 3 cut(s) 92, 133, 367
TatI WGTACW 2 cut(s) 40, 106
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 203
TspRI CASTG 1 cut(s) 327
XapI RAATTY 2 cut(s) 92, 133
XceI RCATGY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.