FvH4_4g06577

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0021059
Physical Location & Seq
Reverse (-)
5848664 .. 5850056
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06577.t1

Sequence Viewer

Length: 618 bp
ATGAATTCGGAAAAAAGGTTCGCCTCTGCCTTGGCTATACGCGACGAAAATCATCCGTTGGTGGGTGCCGCTCGTTCCACCCCTACCCCTGCCCCGGAACAGTTCTTTGCTATGATAGATTTGTGCTTCGATTCTCTCGGGCTGAGAAGCTTTGTCTTGACGGAATACGATGGTTTGCATAATGCGGCTTTGGTCCCCATTGATTCGTTTCAAGTATGGATCGATATCAGAGGTTTGCCCGATGCTCTTATGACAGAAGAGGCGGCTGAGAAGGTGGGCCAAACTCTGTGGCTGGTCGATCATGTTGACAAATTGAATATCAAGAGGGGTACTCAGGTCACCATTTTAGCGACCTTGTCAAGGAAGCTTTTGATTTTTAGATCTATGCTTATGGAAGAAATCAAGCAACAACTGAGCACTTTTGCTCAATCTCAAGCTATTGCTTCAGCTACTGCTGCAGCTACAGTGCAACAACCAAACCAAGGGGTGCAGGGTGACAACTATGTGAGATTTGGTTCCTTGGAGTCGCTAGTTCTACAGGCTAGGACCTTACAAGACAGATCTGGATCTTCCTCTACTATGGCTAGATCTGAAGGCTCATCAACGGTGGTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.4

Weight (kDa)

5.39

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06577
rosa_multiflora Rmu_co8059702.1_g000001 Rmu_sc0002148.1_g000028
rosa_rugosa Rorug02G0525800 Rorug05G0340700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 1 cut(s) 42
AciI CCGC 3 cut(s) 69, 185, 263
AclWI GGATC 2 cut(s) 227, 574
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 429, 612
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 4 cut(s) 62, 94, 360, 482
AgsI TTSAA 2 cut(s) 212, 316
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 5 cut(s) 150, 367, 437, 449, 461
AluI AGCT 5 cut(s) 150, 367, 437, 449, 461
Alw21I GWGCWC 1 cut(s) 419
AlwI GGATC 2 cut(s) 227, 574
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 455, 458
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 3 cut(s) 193, 277, 546
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 331, 506
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 193, 546
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 442, 470
BccI CCATC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 95
BfaI CTAG 3 cut(s) 530, 543, 585
BfmI CTRYAG 3 cut(s) 456, 462, 536
BglII AGATCT 3 cut(s) 380, 560, 587
BisI GCNGC 5 cut(s) 69, 186, 264, 456, 459
BlsI GCNGC 5 cut(s) 70, 187, 265, 457, 460
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 2 cut(s) 193, 546
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 193, 277, 546
BmiI GGNNCC 3 cut(s) 67, 195, 517
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 232
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 222
BsaBI GATNNNNATC 2 cut(s) 224, 565
BsaJI CCNNGG 4 cut(s) 30, 93, 481, 519
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 94, 360, 482
Bse8I GATNNNNATC 2 cut(s) 224, 565
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 30, 93, 481, 519
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 2 cut(s) 224, 565
BseLI CCNNNNNNNGG 4 cut(s) 62, 94, 360, 482
BseMII CTCAG 4 cut(s) 134, 258, 347, 404
BseXI GCAGC 2 cut(s) 442, 470
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 4 cut(s) 62, 94, 360, 482
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 6 cut(s) 219, 298, 380, 560, 566, 587
BspACI CCGC 3 cut(s) 69, 185, 263
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 4 cut(s) 135, 259, 346, 405
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 67, 195, 517
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 2 cut(s) 227, 574
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 30, 93, 481, 519
BssMI GATC 6 cut(s) 219, 298, 380, 560, 566, 587
BssT1I CCWWGG 3 cut(s) 30, 481, 519
Bst4CI ACNGT 3 cut(s) 102, 466, 607
Bst6I CTCTTC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 143, 267, 333, 413
BstEII GGTNACC 1 cut(s) 337
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 6 cut(s) 222, 301, 383, 563, 569, 590
BstMBI GATC 6 cut(s) 219, 298, 380, 560, 566, 587
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 3 cut(s) 456, 462, 536
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 442, 470
BstX2I RGATCY 4 cut(s) 380, 560, 566, 587
BstYI RGATCY 4 cut(s) 380, 560, 566, 587
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 3 cut(s) 193, 277, 546
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 330
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviAII CATG 1 cut(s) 302
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 4 cut(s) 143, 267, 333, 413
DpnI GATC 6 cut(s) 221, 300, 382, 562, 568, 589
DpnII GATC 6 cut(s) 219, 298, 380, 560, 566, 587
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 30, 481, 519
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 193, 546
Eco57I CTGAAG 2 cut(s) 429, 612
Eco88I CYCGRG 1 cut(s) 137
Eco91I GGTNACC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 30, 481, 519
ErhI CCWWGG 3 cut(s) 30, 481, 519
FaeI CATG 1 cut(s) 305
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 5 cut(s) 69, 186, 264, 456, 459
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 5 cut(s) 69, 186, 264, 456, 459
FspBI CTAG 3 cut(s) 530, 543, 585
GluI GCNGC 5 cut(s) 69, 186, 264, 456, 459
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 148, 365
HinfI GANTC 3 cut(s) 131, 203, 524
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 331, 506
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 10, 230, 592
Hpy188III TCNNGA 3 cut(s) 157, 322, 564
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 265, 587
HpyCH4III ACNGT 3 cut(s) 102, 466, 607
HpyCH4V TGCA 4 cut(s) 178, 458, 469, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 4 cut(s) 143, 267, 333, 413
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 6 cut(s) 219, 298, 380, 560, 566, 587
LpnPI CCDG 7 cut(s) 102, 108, 278, 320, 476, 524, 549
Lsp1109I GCAGC 2 cut(s) 442, 470
LweI GCATC 1 cut(s) 232
MaeI CTAG 3 cut(s) 530, 543, 585
MaeIII GTNAC 3 cut(s) 337, 494, 610
MalI GATC 6 cut(s) 221, 300, 382, 562, 568, 589
MbiI CCGCTC 1 cut(s) 71
MboI GATC 6 cut(s) 219, 298, 380, 560, 566, 587
MboII GAAGA 3 cut(s) 269, 407, 561
MflI RGATCY 4 cut(s) 380, 560, 566, 587
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 2 cut(s) 4, 311
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 5 cut(s) 34, 224, 253, 318, 583
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 455
NciI CCSGG 1 cut(s) 95
NdeII GATC 6 cut(s) 219, 298, 380, 560, 566, 587
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 3 cut(s) 67, 195, 517
NmuCI GTSAC 3 cut(s) 337, 494, 610
PfeI GAWTC 2 cut(s) 131, 203
PflFI GACNNNGTC 1 cut(s) 355
PkrI GCNGC 5 cut(s) 70, 187, 265, 457, 460
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 546
PspEI GGTNACC 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 67, 195, 517
PspPI GGNCC 3 cut(s) 193, 277, 546
PspPPI RGGWCCY 1 cut(s) 546
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 4 cut(s) 380, 560, 566, 587
PsyI GACNNNGTC 1 cut(s) 355
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SatI GCNGC 5 cut(s) 69, 186, 264, 456, 459
Sau3AI GATC 6 cut(s) 219, 298, 380, 560, 566, 587
Sau96I GGNCC 3 cut(s) 193, 277, 546
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 3 cut(s) 456, 462, 536
SinI GGWCC 2 cut(s) 193, 546
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 2 cut(s) 4, 311
SsiI CCGC 3 cut(s) 69, 185, 263
SspMI CTAG 3 cut(s) 530, 543, 585
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 3 cut(s) 30, 481, 519
TaaI ACNGT 3 cut(s) 102, 466, 607
TaqI TCGA 3 cut(s) 129, 222, 297
TasI AATT 2 cut(s) 4, 311
TauI GCSGC 3 cut(s) 71, 188, 266
TfiI GAWTC 2 cut(s) 131, 203
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 3 cut(s) 337, 494, 610
TseI GCWGC 2 cut(s) 455, 458
Tsp45I GTSAC 3 cut(s) 337, 494, 610
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 45, 176
TspRI CASTG 1 cut(s) 471
Tth111I GACNNNGTC 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 193, 546
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 4
XspI CTAG 3 cut(s) 530, 543, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.