Rorug02G0525800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0021059
Physical Location & Seq
Reverse (-)
65611690 .. 65612439
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0525800.1

Sequence Viewer

Length: 750 bp
ATGTCTCTTCCCTGTGGAACCCTAGCAGCGCCGACTGGAGGCGCAGAGCATGAAGACGGCGGTCCTTGCCGCCCTCGTATAGCGCGCCAGACTCGCTCCGGCGTCAGCTTTCTCTCTATGGTCTTTTTAGGGCTGGTCTTGGCTCCGATTCTGATTGGACATATCCGATCTCTTACTGTAGATCCGATCATGAGGGAGAAGGATTTTGCTGATGAGTGCCTGGTTTTTTTGGATGACGGTGGTGGGATAGCATATTCGGTGTGGCATCCCGGAGATCTGGCTCACCGGCAGAGTTTTGTTGGAGAGACTTCCGTGCTTGGGTTGCGACTGTTGGGTGGTAATGGCAACAATGGTATAGTCGAAACCTGGCTGGGGAACATCGTCGGCGTTGCAGGAAGAACCTGGGCTGAGGGTGGTGGTTTTGGACGAGATTTAGAGGATCGTGTCGGAACTACGACGGTGGTGATGTCGGCGCCTGCAGCGTTCGAGGCCTTTGGGAGTCGCGTCGTGGGCCGGCGTCGTTTGATCCAGCGGATCAGATCTGAGGAGCCGGTGGTGGCTTCGAGCCAGAACAAACGCGACTCGGGTTGTGATGGTGCAAGTCTCCAGCGACCTGTGATGGAGGCAGGAAGGCAGAGTCGGGTATCTGCAGCGCCGAAGGTGGCTGGGCCGGGGTTAGGGCTAGCTGGAAATAGGGCAACGCTGGTGATGCAGGCGGCGATAGGCTACGGGCAAGAACTGCTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

26.12

Weight (kDa)

7.73

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021059)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06577
rosa_multiflora Rmu_co8059702.1_g000001 Rmu_sc0002148.1_g000028
rosa_rugosa Rorug02G0525800 Rorug05G0340700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccII CGCG 3 cut(s) 85, 504, 579
AciI CCGC 4 cut(s) 60, 70, 532, 716
AclWI GGATC 4 cut(s) 176, 447, 520, 542
AcyI GRCGYC 3 cut(s) 102, 473, 517
AfiI CCNNNNNNNGG 4 cut(s) 38, 318, 372, 677
AjnI CCWGG 3 cut(s) 219, 365, 401
AluBI AGCT 2 cut(s) 108, 686
AluI AGCT 2 cut(s) 108, 686
Alw26I GTCTC 3 cut(s) 9, 299, 608
AlwI GGATC 4 cut(s) 176, 447, 520, 542
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 3 cut(s) 489, 511, 668
ApeKI GCWGC 3 cut(s) 26, 479, 650
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 6 cut(s) 31, 44, 85, 87, 475, 655
AspS9I GGNCC 3 cut(s) 62, 511, 668
AsuC2I CCSGG 2 cut(s) 270, 672
AsuHPI GGTGA 3 cut(s) 275, 475, 718
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 38, 491, 662
BccI CCATC 2 cut(s) 587, 613
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 3 cut(s) 221, 367, 403
BcnI CCSGG 2 cut(s) 270, 672
BcoDI GTCTC 3 cut(s) 9, 299, 608
BfaI CTAG 2 cut(s) 23, 683
BfmI CTRYAG 3 cut(s) 177, 477, 648
BfoI RGCGCY 3 cut(s) 32, 476, 656
BglII AGATCT 2 cut(s) 274, 539
BisI GCNGC 5 cut(s) 27, 70, 480, 651, 717
BlsI GCNGC 5 cut(s) 28, 71, 481, 652, 718
Bme1390I CCNGG 5 cut(s) 221, 270, 367, 403, 672
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 62, 511, 668
BmiI GGNNCC 4 cut(s) 19, 144, 474, 549
BmrFI CCNGG 5 cut(s) 221, 270, 367, 403, 672
BmsI GCATC 2 cut(s) 274, 699
BmtI GCTAGC 1 cut(s) 686
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 57, 590
Bpu10I CCTNAGC 1 cut(s) 408
BpuMI CCSGG 2 cut(s) 270, 672
BsaHI GRCGYC 3 cut(s) 102, 473, 517
BsaJI CCNNGG 2 cut(s) 402, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 318, 372, 677
Bse118I RCCGGY 3 cut(s) 285, 513, 550
Bse1I ACTGG 1 cut(s) 40
BseBI CCWGG 3 cut(s) 221, 367, 403
BseDI CCNNGG 2 cut(s) 402, 671
BseGI GGATG 2 cut(s) 238, 265
BseLI CCNNNNNNNGG 4 cut(s) 38, 318, 372, 677
BseMII CTCAG 2 cut(s) 399, 534
BseNI ACTGG 1 cut(s) 40
BsePI GCGCGC 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 3 cut(s) 38, 491, 662
BseYI CCCAGC 2 cut(s) 370, 665
Bsh1236I CGCG 3 cut(s) 85, 504, 579
BshFI GGCC 3 cut(s) 491, 513, 670
BshNI GGYRCC 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 6 cut(s) 99, 270, 286, 514, 551, 671
BslI CCNNNNNNNGG 4 cut(s) 38, 318, 372, 677
BsmAI GTCTC 3 cut(s) 9, 299, 608
BsnI GGCC 3 cut(s) 491, 513, 670
BsoBI CYCGRG 1 cut(s) 583
Bsp143I GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
BspACI CCGC 4 cut(s) 60, 70, 532, 716
BspANI GGCC 3 cut(s) 491, 513, 670
BspCNI CTCAG 2 cut(s) 400, 535
BspFNI CGCG 3 cut(s) 85, 504, 579
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 19, 144, 474, 549
BspMAI CTGCAG 2 cut(s) 481, 652
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 4 cut(s) 176, 447, 520, 542
BspT107I GGYRCC 1 cut(s) 472
BsrFI RCCGGY 3 cut(s) 285, 513, 550
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 3 cut(s) 285, 513, 550
BssECI CCNNGG 2 cut(s) 402, 671
BssHII GCGCGC 1 cut(s) 83
BssMI GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
BssNI GRCGYC 3 cut(s) 102, 473, 517
Bst2UI CCWGG 3 cut(s) 221, 367, 403
Bst4CI ACNGT 4 cut(s) 178, 239, 330, 460
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 3 cut(s) 102, 473, 517
BstAPI GCANNNNNTGC 1 cut(s) 739
BstC8I GCNNGC 5 cut(s) 85, 477, 515, 684, 714
BstDEI CTNAG 2 cut(s) 408, 543
BstF5I GGATG 2 cut(s) 238, 265
BstFNI CGCG 3 cut(s) 85, 504, 579
BstH2I RGCGCY 3 cut(s) 32, 476, 656
BstHHI GCGC 6 cut(s) 31, 44, 85, 87, 475, 655
BstKTI GATC 8 cut(s) 170, 184, 189, 277, 442, 528, 537, 542
BstMAI GTCTC 3 cut(s) 9, 299, 608
BstMBI GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
BstMWI GCNNNNNNNGC 8 cut(s) 66, 93, 322, 479, 488, 510, 709, 739
BstNI CCWGG 3 cut(s) 221, 367, 403
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 5 cut(s) 219, 268, 365, 401, 670
BstSFI CTRYAG 3 cut(s) 177, 477, 648
BstUI CGCG 3 cut(s) 85, 504, 579
BstV1I GCAGC 3 cut(s) 38, 491, 662
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 3 cut(s) 181, 274, 539
BstYI RGATCY 3 cut(s) 181, 274, 539
BsuRI GGCC 3 cut(s) 491, 513, 670
BtsCI GGATG 2 cut(s) 238, 265
Cac8I GCNNGC 5 cut(s) 85, 477, 515, 684, 714
CciI TCATGA 1 cut(s) 189
CfoI GCGC 6 cut(s) 31, 44, 85, 87, 475, 655
Cfr10I RCCGGY 3 cut(s) 285, 513, 550
Cfr13I GGNCC 3 cut(s) 62, 511, 668
CseI GACGC 3 cut(s) 91, 493, 506
CviAII CATG 2 cut(s) 50, 190
DdeI CTNAG 2 cut(s) 408, 543
DinI GGCGCC 1 cut(s) 474
DpnI GATC 8 cut(s) 169, 183, 188, 276, 441, 527, 536, 541
DpnII GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 219, 365, 401
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
FaeI CATG 2 cut(s) 53, 193
FaiI YATR 7 cut(s) 51, 80, 119, 162, 191, 253, 356
FalI AAGNNNNNCTT 1 cut(s) 726
FatI CATG 2 cut(s) 49, 189
Fnu4HI GCNGC 5 cut(s) 27, 70, 480, 651, 717
FokI GGATG 2 cut(s) 245, 252
Fsp4HI GCNGC 5 cut(s) 27, 70, 480, 651, 717
FspBI CTAG 2 cut(s) 23, 683
GlaI GCGC 6 cut(s) 30, 43, 84, 86, 474, 654
GluI GCNGC 5 cut(s) 27, 70, 480, 651, 717
GsaI CCCAGC 2 cut(s) 374, 669
GsuI CTGGAG 2 cut(s) 57, 590
HaeII RGCGCY 3 cut(s) 32, 476, 656
HaeIII GGCC 3 cut(s) 491, 513, 670
HapII CCGG 6 cut(s) 99, 270, 286, 514, 551, 671
HgaI GACGC 3 cut(s) 91, 493, 506
HhaI GCGC 6 cut(s) 31, 44, 85, 87, 475, 655
Hin1I GRCGYC 3 cut(s) 102, 473, 517
Hin1II CATG 2 cut(s) 53, 193
Hin6I GCGC 6 cut(s) 29, 42, 83, 85, 473, 653
HinP1I GCGC 6 cut(s) 29, 42, 83, 85, 473, 653
HinfI GANTC 5 cut(s) 91, 148, 499, 581, 637
HpaII CCGG 6 cut(s) 99, 270, 286, 514, 551, 671
HphI GGTGA 3 cut(s) 275, 475, 718
Hpy188I TCNGA 7 cut(s) 147, 153, 167, 186, 449, 539, 544
Hpy188III TCNNGA 1 cut(s) 190
Hpy99I CGWCG 4 cut(s) 386, 460, 509, 522
HpyAV CCTTC 3 cut(s) 193, 624, 652
HpyCH4III ACNGT 4 cut(s) 178, 239, 330, 460
HpyCH4V TGCA 5 cut(s) 392, 479, 599, 650, 712
HpyF10VI GCNNNNNNNGC 8 cut(s) 66, 93, 322, 479, 488, 510, 709, 739
HpyF3I CTNAG 2 cut(s) 408, 543
Hsp92I GRCGYC 3 cut(s) 102, 473, 517
Hsp92II CATG 2 cut(s) 53, 193
HspAI GCGC 6 cut(s) 29, 42, 83, 85, 473, 653
KasI GGCGCC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 513
KroNI GCCGGC 1 cut(s) 515
Kzo9I GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
LmnI GCTCC 3 cut(s) 101, 148, 547
Lsp1109I GCAGC 3 cut(s) 38, 491, 662
LweI GCATC 2 cut(s) 274, 699
MaeI CTAG 2 cut(s) 23, 683
MalI GATC 8 cut(s) 169, 183, 188, 276, 441, 527, 536, 541
MboI GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
MboII GAAGA 2 cut(s) 65, 408
MflI RGATCY 3 cut(s) 181, 274, 539
Mly113I GGCGCC 1 cut(s) 473
MlyI GAGTC 4 cut(s) 85, 508, 575, 646
MmeI TCCRAC 2 cut(s) 280, 427
MnlI CCTC 8 cut(s) 32, 84, 186, 403, 430, 481, 538, 616
MroNI GCCGGC 1 cut(s) 513
MroXI GAANNNNTTC 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 6 cut(s) 99, 270, 286, 514, 551, 671
MspR9I CCNGG 5 cut(s) 221, 270, 367, 403, 672
MvaI CCWGG 3 cut(s) 221, 367, 403
MvnI CGCG 3 cut(s) 85, 504, 579
MwoI GCNNNNNNNGC 8 cut(s) 66, 93, 322, 479, 488, 510, 709, 739
NaeI GCCGGC 1 cut(s) 515
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 2 cut(s) 270, 672
NdeII GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
NgoMIV GCCGGC 1 cut(s) 513
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 2 cut(s) 53, 193
NlaIV GGNNCC 4 cut(s) 19, 144, 474, 549
PagI TCATGA 1 cut(s) 189
PauI GCGCGC 1 cut(s) 83
PceI AGGCCT 1 cut(s) 491
PdiI GCCGGC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 5 cut(s) 28, 71, 481, 652, 718
PleI GAGTC 4 cut(s) 85, 507, 575, 645
PluTI GGCGCC 1 cut(s) 476
PpsI GAGTC 4 cut(s) 85, 507, 575, 645
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 219, 365, 401
PspFI CCCAGC 2 cut(s) 370, 665
PspGI CCWGG 3 cut(s) 219, 365, 401
PspN4I GGNNCC 4 cut(s) 19, 144, 474, 549
PspPI GGNCC 3 cut(s) 62, 511, 668
PstI CTGCAG 2 cut(s) 481, 652
PsuI RGATCY 3 cut(s) 181, 274, 539
PteI GCGCGC 1 cut(s) 83
SatI GCNGC 5 cut(s) 27, 70, 480, 651, 717
Sau3AI GATC 8 cut(s) 167, 181, 186, 274, 439, 525, 534, 539
Sau96I GGNCC 3 cut(s) 62, 511, 668
SchI GAGTC 4 cut(s) 85, 508, 575, 646
ScrFI CCNGG 5 cut(s) 221, 270, 367, 403, 672
SetI ASST 6 cut(s) 110, 368, 404, 616, 663, 688
SfaNI GCATC 2 cut(s) 274, 699
SfcI CTRYAG 3 cut(s) 177, 477, 648
SfoI GGCGCC 1 cut(s) 474
SinI GGWCC 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 4 cut(s) 60, 70, 532, 716
SspDI GGCGCC 1 cut(s) 472
SspMI CTAG 2 cut(s) 23, 683
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 5 cut(s) 219, 268, 365, 401, 670
TaaI ACNGT 4 cut(s) 178, 239, 330, 460
TaqI TCGA 3 cut(s) 360, 486, 563
TauI GCSGC 2 cut(s) 72, 719
TfiI GAWTC 1 cut(s) 148
TseI GCWGC 3 cut(s) 26, 479, 650
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 301, 735
VpaK11BI GGWCC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 2 cut(s) 23, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.