FvH4_4g11831

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0021060
Physical Location & Seq
Reverse (-)
15562563 .. 15563691
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11831.t1

Sequence Viewer

Length: 561 bp
ATGTCAGACTACTTACCTGAAGAAGTGGTAGATGAAATTCTAGTGAGGTTGCCCGTGAAATCCTTGATAAAATGCATCACTGTGTGCAAATCATGGAGGTCTCTGGTTGAAAGCTCTGCCTTCATGGACACCCACCTGAGCCGCCAAAACGACAACACTAACCTCCTTCTGCTCAAGTACTTTGCAATCATTTGGAACCCATCTATTCGAAGGTTTGTGATTTTGCCTAGGCCTAGGGTTGTTGACTATGAGAATGTGGAACAATTCCATGCCTTTGGCTTTGATATGCCCACAAATGGCTATAAGGTTTTGAGAATTATGAGTTATCTGGACTGTTCTGATGTTCCTCCATATACCCCATGTGAGGTTGAGGTTTACTCGTTAGCCAGGGGCAGTTTGAAGAGTCTTAGTGCTGCTGTTGTTCCCAAAGGGCTGTTTTATGTGAATTACAATAGTCGTCAAGCTGTAAGGTTTGCAATTGATGGATCTGAATGGTATTTTGTGGATTCTTTTGTTGAGAGCCTTGTGTTACTTCGCCAAGCCAATGCTATATCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

6.13

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 4 - 39 3.2e-08 F-box-like
F-box PF00646 5 - 41 1.4e-09 F-box domain
FBA_3 PF08268 62 - 131 2.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g11831 FvH4_6g37690
pyrus_communis pycom13g11280
rosa_laevigata RLG00000031503 RLG00000031515

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 296, 364
AgsI TTSAA 2 cut(s) 110, 400
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 2 cut(s) 114, 464
AluI AGCT 2 cut(s) 114, 464
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 493
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 36
AspA2I CCTAGG 2 cut(s) 227, 233
AsuII TTCGAA 1 cut(s) 208
AvrII CCTAGG 2 cut(s) 227, 233
BbvI GCAGC 1 cut(s) 400
BccI CCATC 2 cut(s) 208, 476
BciT130I CCWGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 3 cut(s) 41, 228, 234
BisI GCNGC 2 cut(s) 142, 414
BlnI CCTAGG 2 cut(s) 227, 233
BlsI GCNGC 2 cut(s) 143, 415
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 362, 394
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 227, 233, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 364
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 3 cut(s) 227, 233, 387
BseLI CCNNNNNNNGG 2 cut(s) 296, 364
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 400
BshFI GGCC 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 296, 364
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 227, 233, 387
BssMI GATC 1 cut(s) 485
BssT1I CCWWGG 2 cut(s) 227, 233
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 82, 335
Bst6I CTCTTC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 137, 407
BstKTI GATC 1 cut(s) 488
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 78
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 93, 124, 269, 360
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 137, 407
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
DraIII CACNNNGTG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 227, 233
Eco147I AGGCCT 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 227, 233
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 2 cut(s) 227, 233
FaeI CATG 4 cut(s) 96, 127, 272, 363
FatI CATG 4 cut(s) 92, 123, 268, 359
Fnu4HI GCNGC 2 cut(s) 142, 414
Fsp4HI GCNGC 2 cut(s) 142, 414
FspBI CTAG 3 cut(s) 41, 228, 234
GluI GCNGC 2 cut(s) 142, 414
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 4 cut(s) 96, 127, 272, 363
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 403, 506
Hpy166II GTNNAC 2 cut(s) 244, 376
Hpy188I TCNGA 3 cut(s) 7, 340, 490
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 2 cut(s) 244, 376
HpyAV CCTTC 3 cut(s) 130, 176, 204
HpyCH4III ACNGT 2 cut(s) 82, 335
HpyCH4V TGCA 4 cut(s) 75, 87, 185, 476
HpyF3I CTNAG 2 cut(s) 137, 407
Hsp92II CATG 4 cut(s) 96, 127, 272, 363
Kzo9I GATC 1 cut(s) 485
LpnPI CCDG 6 cut(s) 30, 89, 149, 314, 373, 400
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 84
MaeI CTAG 3 cut(s) 41, 228, 234
MaeIII GTNAC 1 cut(s) 528
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MboII GAAGA 2 cut(s) 32, 412
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 485
MluCI AATT 5 cut(s) 36, 263, 315, 445, 477
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 6 cut(s) 39, 90, 173, 357, 358, 364
Mph1103I ATGCAT 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 388
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 388
NdeII GATC 1 cut(s) 485
NlaIII CATG 4 cut(s) 96, 127, 272, 363
NlaIV GGNNCC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 77
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 2 cut(s) 143, 415
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 2 cut(s) 142, 414
Sau3AI GATC 1 cut(s) 485
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 5 cut(s) 36, 263, 315, 445, 477
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 1 cut(s) 142
SspMI CTAG 3 cut(s) 41, 228, 234
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 227, 233
TaaI ACNGT 2 cut(s) 82, 335
TaqI TCGA 1 cut(s) 208
TasI AATT 5 cut(s) 36, 263, 315, 445, 477
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 506
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 48, 112
TspRI CASTG 1 cut(s) 85
XapI RAATTY 1 cut(s) 36
XmaJI CCTAGG 2 cut(s) 227, 233
XspI CTAG 3 cut(s) 41, 228, 234
ZrmI AGTACT 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.