Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0021060

Physical Location & Seq

Genomic Coordinates Forward (+)

29684837 .. 29685277

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCTAGGCCTAGAGTTGTTAATCGCCGTGAGAATTTGGAAAAGTTCTATGCCTTTGGCTTTGATATGCCCACAAATGATTATAAGGTATTGAGAATTATGAGTCATTTTGACGGATCTGATGTTTCTCTAAAAACCCCATGTGAGGTTGAGGTTTACTCGTTAGCCAGGGGCTGCTGGAAGAGTCTTAGTGCTGATGTTGTTCCCAAAGGTTTTATGGAATTTCGAAATGGTGTTCTTCTGAATGGCGCTCTTCACTGGTTTCAAGATGGTAAGGATAGGGACAACTTCATTGTGACTTTTGATATGTACCATGAAGTATTCTGTGAGATGGTTGTGCCCGATGCTATGGCAAAACGGGGACACAATCAATGTTTGTCGCGATACGGGGAGTCTCTTGCCATTGTTGATATGGCTAAATTAGAAGGGGGCCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

147

Amino Acids

16.77

Weight (kDa)

6.41

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	10 - 139	1e-10	F-box associated beta propeller domain
FBA_1	PF07734	13 - 127	2.6e-16	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	27 - 128	9.5e-08	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11831 FvH4_6g37690
pyrus_communis	pycom13g11280
rosa_laevigata	RLG00000031503 RLG00000031515

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccII	CGCG	1 cut(s)	382
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	34, 221
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	8, 430
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	34, 221
AspA2I	CCTAGG	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	434
AsuII	TTCGAA	1 cut(s)	226
AvrII	CCTAGG	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	263, 325
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	6, 12
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	1 cut(s)	175
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	169, 434
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	169, 434
BmsI	GCATC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu14I	TTCGAA	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	5, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	5, 168
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	10, 432
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	296, 375
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	296, 375
BsnI	GGCC	2 cut(s)	10, 432
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	116
Bsp68I	TCGCGA	1 cut(s)	382
BspANI	GGCC	2 cut(s)	10, 432
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	258
BspT104I	TTCGAA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	5, 168
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	176, 258
BstBI	TTCGAA	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	167, 432
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	10, 432
BtsIMutI	CAGTG	1 cut(s)	256
BtuMI	TCGCGA	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	141, 314
CviJI	RGCY	6 cut(s)	10, 60, 167, 174, 416, 432
CviKI_1	RGCY	6 cut(s)	10, 60, 167, 174, 416, 432
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	176, 258
EarI	CTCTTC	2 cut(s)	176, 258
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	144, 317
FaqI	GGGAC	2 cut(s)	296, 375
FatI	CATG	2 cut(s)	140, 313
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	6, 12
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	10, 432
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	144, 317
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	103, 184, 392
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	121, 243
Hpy188III	TCNNGA	2 cut(s)	266, 381
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	144, 317
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	116
LguI	GCTCTTC	1 cut(s)	258
LpnPI	CCDG	4 cut(s)	154, 163, 181, 244
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	6, 12
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	3 cut(s)	193, 230, 245
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	34, 96, 221, 419
MlyI	GAGTC	3 cut(s)	112, 193, 401
MnlI	CCTC	2 cut(s)	139, 145
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	169, 434
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	382
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	144, 317
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	295
NruI	TCGCGA	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	3 cut(s)	111, 192, 400
PpsI	GAGTC	3 cut(s)	111, 192, 400
PsiI	TTATAA	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	382
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	3 cut(s)	112, 193, 401
ScrFI	CCNGG	2 cut(s)	169, 434
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	4 cut(s)	90, 150, 156, 214
SfaNI	GCATC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	226
Sse9I	AATT	4 cut(s)	34, 96, 221, 419
SseBI	AGGCCT	1 cut(s)	10
SspMI	CTAG	2 cut(s)	6, 12
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	167, 432
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	226
TasI	AATT	4 cut(s)	34, 96, 221, 419
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	280, 330
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	263
XapI	RAATTY	2 cut(s)	34, 221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 409
XmaJI	CCTAGG	1 cut(s)	5
XspI	CTAG	2 cut(s)	6, 12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.