RLG00000031503

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021060
Physical Location & Seq
Reverse (-)
5673736 .. 5674272
537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031503

Sequence Viewer

Length: 537 bp
ATGGTGGAGGGTCATGTTTTTCTGAATGGCGCTCTACATTGGTTTCAATATGGTAACAGAACCCGGGGTCAGGGTAGGGACAATTTCATCATCACTTTTGATATGTACAATGAAATATTCTGTGAGATGGTTCTGCCCAATGCTTTGACAACACAGGAACGCACTCTACATATGTTGCGATATGGGGAGTCTCTTGCCATTGTTGAGATTGCTGACTGTGATTGGGCTGAAGAGGCTACATTTCATGTTTGGGTCATGTGTGAGTATGGTGTGGTAGAATCGTGGAATCTGTTATACACTCTACTTGTCCCAGGATATCCAAGTCTTATTGTGAAACCATTTGGTTTTACAAAGAATGGGGGAACACTGGTTAATCTACGTCCTTTTGGGCTGGCTTATGTGAATCGCAATGGCCGTCTAGCTGGAAACCTTACAATTACAATTGATGATGAACCTCATTTTCATTGGTGCTGTTTTGCGGATTCTTTTATACAGAGCCTTGTGTTACTTGGCCAAGCCAATGCTATTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

179

Amino Acids

20.29

Weight (kDa)

5.08

Isoelectric Point (pI)

23.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 100 1.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g11831 FvH4_6g37690
pyrus_communis pycom13g11280
rosa_laevigata RLG00000031503 RLG00000031515

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 479
AcoI YGGCCR 2 cut(s) 412, 511
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 412, 511
AspLEI GCGC 1 cut(s) 32
AsuC2I CCSGG 2 cut(s) 64, 65
AvaI CYCGRG 1 cut(s) 63
BalI TGGCCA 1 cut(s) 513
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 2 cut(s) 64, 65
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 64, 65, 312
BmeT110I CYCGRG 1 cut(s) 63
BmrFI CCNGG 3 cut(s) 64, 65, 312
BpuMI CCSGG 2 cut(s) 64, 65
BsaJI CCNNGG 3 cut(s) 63, 64, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 415
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 63, 64, 310
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 372
BshFI GGCC 2 cut(s) 414, 513
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 2 cut(s) 92, 293
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 92, 293
BsnI GGCC 2 cut(s) 414, 513
BsoBI CYCGRG 1 cut(s) 63
Bsp1407I TGTACA 1 cut(s) 105
BspACI CCGC 1 cut(s) 479
BspANI GGCC 2 cut(s) 414, 513
BsrDI GCAATG 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 63, 64, 310
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 3 cut(s) 62, 63, 310
BsuRI GGCC 2 cut(s) 414, 513
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 32
Cfr9I CCCGGG 1 cut(s) 63
Csp6I GTAC 1 cut(s) 106
CviAII CATG 3 cut(s) 14, 245, 256
CviJI RGCY 9 cut(s) 227, 236, 391, 395, 414, 422, 498, 513, 518
CviKI_1 RGCY 9 cut(s) 227, 236, 391, 395, 414, 422, 498, 513, 518
CviQI GTAC 1 cut(s) 106
EaeI YGGCCR 2 cut(s) 412, 511
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 317
FaeI CATG 3 cut(s) 17, 248, 259
FaqI GGGAC 2 cut(s) 92, 293
FatI CATG 3 cut(s) 13, 244, 255
FauNDI CATATG 1 cut(s) 171
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 414, 513
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 17, 248, 259
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 5 cut(s) 188, 278, 286, 403, 482
HpaII CCGG 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 3 cut(s) 17, 248, 259
HspAI GCGC 1 cut(s) 30
LpnPI CCDG 8 cut(s) 56, 77, 140, 297, 324, 353, 377, 408
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 53, 504
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 3 cut(s) 82, 435, 441
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 226, 465
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 3 cut(s) 64, 65, 312
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 2 cut(s) 64, 65
NdeI CATATG 1 cut(s) 171
NlaIII CATG 3 cut(s) 17, 248, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PfeI GAWTC 4 cut(s) 278, 286, 403, 482
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 150, 182
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 372
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 64, 65, 312
SetI ASST 4 cut(s) 382, 424, 432, 457
SmaI CCCGGG 1 cut(s) 65
Sse9I AATT 3 cut(s) 82, 435, 441
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 3 cut(s) 62, 63, 310
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 382
TasI AATT 3 cut(s) 82, 435, 441
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 4 cut(s) 278, 286, 403, 482
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 372
TspDTI ATGAA 5 cut(s) 76, 126, 233, 452, 465
TspMI CCCGGG 1 cut(s) 63
TspRI CASTG 1 cut(s) 372
XmaI CCCGGG 1 cut(s) 63
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.