RLG00000031515

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021060
Physical Location & Seq
Forward (+)
5792507 .. 5796048
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031515

Sequence Viewer

Length: 1101 bp
ATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGACAACAGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAATCCCAAAATCAGATAAGCAATACGTCTGGAAATCAGCTGCTGAGAGTAGCTCTTATGTGATTAGGGTAGAAACTAATCCAGAAAATATCATTAGCCGTGGGACGCAGGTCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCGCAATCTGTTTCCTTCCCCATCTACACATGGCAAGAAAAGTCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTTGAGGTTTTCTCGTTAGCCAGGGGCTGCTGGAAGTGTCTTACTGCTGCTGTTATTCCTAATGGTTCTATGGTGGAGGGTCATGTTTTTCTGAATGGCGCTCTACATTGGTTTCAATATGGTAACAGAACCCGGGGTCAGGGTAGGGACAATTTCATCATCACTTTTGATATGTACAATGAAATATTCTGTGAGATGGTTCTGCCCAATGCTTTGACAACACAGGAACGCACTCTACATATGTTGCGATATGGGGAGTCTCTTGCCATTGTTGAGATTGCTGACTGTGATTGGGCTGAAGAGGCTACATTTCATGTTTGGGTCATGTGTGAGTATGGTGTGGTAGAATCGTGGAATCTGTTATACACTCTACTTGTCCCAGGATATCCAAGTCTTATTGTGAAACCATTTGGTTTTACAAAGAATGGGGGAACACTGGTTAATCTACGTCCTTTTGGGCTGGCTTATGTGAATCGCAATGGCCGTCTAGCTGGAAACCTTACAATTACAATTGATGATGAACCTCATTTTCATTGGTGCTGTTTTGCGGATTCTTTTATACAGAGCCTTGTGTTACTTGGCCAAGCCAATGCTATTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

367

Amino Acids

41.72

Weight (kDa)

5.08

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 91 - 166 3.7e-14 Hsp90 protein
FBA_1 PF07734 160 - 288 4.4e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g11831 FvH4_6g37690
pyrus_communis pycom13g11280
rosa_laevigata RLG00000031503 RLG00000031515

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 301
AciI CCGC 1 cut(s) 1043
AclWI GGATC 2 cut(s) 286, 299
AcoI YGGCCR 2 cut(s) 976, 1075
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 2 cut(s) 34, 671
AfiI CCNNNNNNNGG 3 cut(s) 301, 398, 634
AgsI TTSAA 2 cut(s) 377, 611
AjnI CCWGG 2 cut(s) 515, 874
AluBI AGCT 3 cut(s) 167, 180, 986
AluI AGCT 3 cut(s) 167, 180, 986
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 2 cut(s) 286, 299
AlwNI CAGNNNCTG 3 cut(s) 170, 284, 522
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 3 cut(s) 254, 976, 1075
ApeKI GCWGC 3 cut(s) 167, 522, 542
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 596
AsuC2I CCSGG 3 cut(s) 289, 628, 629
AsuHPI GGTGA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 627
BalI TGGCCA 1 cut(s) 1077
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 154, 509, 529
BccI CCATC 2 cut(s) 344, 685
BceAI ACGGC 2 cut(s) 210, 963
BciT130I CCWGG 2 cut(s) 517, 876
BcnI CCSGG 3 cut(s) 289, 628, 629
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 1 cut(s) 983
BfoI RGCGCY 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 3 cut(s) 168, 523, 543
BlsI GCNGC 3 cut(s) 169, 524, 544
Bme1390I CCNGG 5 cut(s) 289, 517, 628, 629, 876
BmeT110I CYCGRG 1 cut(s) 627
BmiI GGNNCC 2 cut(s) 34, 293
BmrFI CCNGG 5 cut(s) 289, 517, 628, 629, 876
BoxI GACNNNNGTC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 443
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 491, 523
BpuMI CCSGG 3 cut(s) 289, 628, 629
BsaJI CCNNGG 6 cut(s) 28, 226, 516, 627, 628, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 398, 634
Bse1I ACTGG 1 cut(s) 936
Bse3DI GCAATG 2 cut(s) 36, 979
BseBI CCWGG 2 cut(s) 517, 876
BseDI CCNNGG 6 cut(s) 28, 226, 516, 627, 628, 874
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 301, 398, 634
BseMI GCAATG 2 cut(s) 36, 979
BseMII CTCAG 4 cut(s) 56, 162, 291, 438
BseNI ACTGG 1 cut(s) 936
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 3 cut(s) 154, 509, 529
BshFI GGCC 3 cut(s) 256, 978, 1077
BshNI GGYRCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 3 cut(s) 257, 289, 628
BslFI GGGAC 3 cut(s) 244, 656, 857
BslI CCNNNNNNNGG 3 cut(s) 301, 398, 634
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 3 cut(s) 244, 656, 857
BsnI GGCC 3 cut(s) 256, 978, 1077
BsoBI CYCGRG 1 cut(s) 627
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 1 cut(s) 1043
BspANI GGCC 3 cut(s) 256, 978, 1077
BspCNI CTCAG 4 cut(s) 55, 163, 290, 439
BspLI GGNNCC 2 cut(s) 34, 293
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 2 cut(s) 286, 299
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 36, 979
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 1 cut(s) 936
BssECI CCNNGG 6 cut(s) 28, 226, 516, 627, 628, 874
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 517, 876
Bst4CI ACNGT 3 cut(s) 56, 367, 782
Bst6I CTCTTC 2 cut(s) 372, 789
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 285, 957
BstDEI CTNAG 4 cut(s) 42, 171, 277, 447
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 797
BstNI CCWGG 2 cut(s) 517, 876
BstPAI GACNNNNGTC 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 287, 515, 626, 627, 874
BstV1I GCAGC 3 cut(s) 154, 509, 529
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 3 cut(s) 256, 978, 1077
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 929
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 285, 957
CaiI CAGNNNCTG 3 cut(s) 170, 284, 522
CfoI GCGC 1 cut(s) 596
Cfr9I CCCGGG 1 cut(s) 627
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 33, 670
CviAII CATG 4 cut(s) 345, 578, 809, 820
CviQI GTAC 2 cut(s) 33, 670
DdeI CTNAG 4 cut(s) 42, 171, 277, 447
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 976, 1075
Eam1104I CTCTTC 2 cut(s) 372, 789
EarI CTCTTC 2 cut(s) 372, 789
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 881
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 515, 874
EcoRV GATATC 1 cut(s) 881
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 4 cut(s) 348, 581, 812, 823
FaqI GGGAC 3 cut(s) 244, 656, 857
FatI CATG 4 cut(s) 344, 577, 808, 819
FauNDI CATATG 1 cut(s) 735
Fnu4HI GCNGC 3 cut(s) 168, 523, 543
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 168, 523, 543
FspBI CTAG 1 cut(s) 983
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 168, 523, 543
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 3 cut(s) 256, 978, 1077
HapII CCGG 3 cut(s) 257, 289, 628
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 596
Hin1II CATG 4 cut(s) 348, 581, 812, 823
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HinfI GANTC 5 cut(s) 752, 842, 850, 967, 1046
HpaII CCGG 3 cut(s) 257, 289, 628
HphI GGTGA 1 cut(s) 434
Hpy188I TCNGA 4 cut(s) 45, 142, 280, 588
Hpy188III TCNNGA 3 cut(s) 157, 209, 295
HpyAV CCTTC 2 cut(s) 340, 392
HpyCH4III ACNGT 3 cut(s) 56, 367, 782
HpyCH4IV ACGT 2 cut(s) 153, 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 797
HpyF3I CTNAG 4 cut(s) 42, 171, 277, 447
HpySE526I ACGT 2 cut(s) 153, 943
Hsp92II CATG 4 cut(s) 348, 581, 812, 823
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 154, 509, 529
MaeI CTAG 1 cut(s) 983
MaeII ACGT 2 cut(s) 153, 943
MaeIII GTNAC 3 cut(s) 47, 617, 1068
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 6 cut(s) 389, 398, 416, 439, 448, 806
MfeI CAATTG 1 cut(s) 1005
MflI RGATCY 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 1077
MluCI AATT 6 cut(s) 68, 310, 467, 646, 999, 1005
MluNI TGGCCA 1 cut(s) 1077
MlyI GAGTC 1 cut(s) 761
MnlI CCTC 9 cut(s) 4, 364, 373, 376, 412, 493, 565, 790, 1029
Mox20I TGGCCA 1 cut(s) 1077
MscI TGGCCA 1 cut(s) 1077
MseI TTAA 2 cut(s) 251, 936
Msp20I TGGCCA 1 cut(s) 1077
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 257, 289, 628
MspR9I CCNGG 5 cut(s) 289, 517, 628, 629, 876
MunI CAATTG 1 cut(s) 1005
MvaI CCWGG 2 cut(s) 517, 876
MwoI GCNNNNNNNGC 1 cut(s) 797
NciI CCSGG 3 cut(s) 289, 628, 629
NdeI CATATG 1 cut(s) 735
NdeII GATC 1 cut(s) 291
NlaIII CATG 4 cut(s) 348, 581, 812, 823
NlaIV GGNNCC 2 cut(s) 34, 293
NmuCI GTSAC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PfeI GAWTC 4 cut(s) 842, 850, 967, 1046
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 3 cut(s) 169, 524, 544
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PshAI GACNNNNGTC 1 cut(s) 236
Psp6I CCWGG 2 cut(s) 515, 874
PspGI CCWGG 2 cut(s) 515, 874
PspN4I GGNNCC 2 cut(s) 34, 293
PsrI GAACNNNNNNTAC 2 cut(s) 714, 746
PstNI CAGNNNCTG 3 cut(s) 170, 284, 522
PsuI RGATCY 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 2 cut(s) 34, 671
RsaNI GTAC 2 cut(s) 33, 670
SaqAI TTAA 2 cut(s) 251, 936
SatI GCNGC 3 cut(s) 168, 523, 543
Sau3AI GATC 1 cut(s) 291
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 5 cut(s) 289, 517, 628, 629, 876
SmaI CCCGGG 1 cut(s) 629
Sse9I AATT 6 cut(s) 68, 310, 467, 646, 999, 1005
SsiI CCGC 1 cut(s) 1043
SspI AATATT 1 cut(s) 681
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 5 cut(s) 287, 515, 626, 627, 874
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 3 cut(s) 56, 367, 782
TaiI ACGT 2 cut(s) 156, 946
TasI AATT 6 cut(s) 68, 310, 467, 646, 999, 1005
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 4 cut(s) 842, 850, 967, 1046
Tru1I TTAA 2 cut(s) 251, 936
Tru9I TTAA 2 cut(s) 251, 936
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 3 cut(s) 167, 522, 542
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 6 cut(s) 492, 640, 690, 797, 1016, 1029
TspMI CCCGGG 1 cut(s) 627
TspRI CASTG 1 cut(s) 936
Van91I CCANNNNNTGG 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 627
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.