FvH4_4g17530

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009120
Physical Location & Seq
Reverse (-)
21474485 .. 21481108
6624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17530.t2

Sequence Viewer

Length: 1686 bp
ATGGACGTCCCCAAGGACCAAATCGCCTCTCTCATGGAGCACGGCCTCCACACCTCCGCCCAAATCCTCGGCTGCTTTCTCGTTTCTTCCCCAGCTGCCAATGCCGACGTCACTCCCCACCTCAAAGCCGAGAGCTTGGTGCTTCTCGGCGACTCCTTGTTTCGTGACAGAGAGTTTCGCAGAGCAATACATACATACAAGCAAGCATTGCAGTTTTGCAAGATTATCTCCAAAACGAATCCGGCATCGTCCCGAAGTAGTTCACTGGCCTCAAACCGGTCCTCTTCGCCTAATGTATTAAACGTTTCTGGGATTAATGACAATGAGGTGAAGTTCAAGATTGCATCTTGTCATTCTGCGCTTAGTGAGTACGGTGCAGCCCTTGCTGAGATGGATAGTATTCCAAGCAAAATGAGGAACTTGCAGATGAATTTGTTGATGGGAAAACTCTACCGGTATTCTAGACAGAATCGTTCTGCTGTTTCTTGTTTCAAAGAATGTCTAAGGTCTTGCCCTTATGTCTTCGAGGCTATCATAGCTTTAGCAGAATTAGGAGTTTCTGCTAAAGACATTATTTCCTTGATTCCACAGACTCCAAATAGAAGTGGAAGAGCTTCATTTGAGCATTTGGACTCGAGTCGTTGGCTGCAACGCTATGTTGAGGCCCAGTGTTCCATCGCTTCTAATGACTACAAAGGTGGTCTGGAACTCTTTACAGACCTTTTGCAACGTTTCCCTAATAACTTACACTTGTTACTTGAAATTGCAAAGGTTGAAGCTATTGTTGGGAAAAATGATGAGGCTATAATGAATTTTGAAAAGGCTCGATTAATTGATCCATATGTTGTGACATATATGGATGAGTATGCAATGCTTCTAAAGATAAAGTCTGACTTTTCAAAGCTAAACAAATTAGTGCATGATTTGTTGATCACTGATTCTACAAGGCCAGAAGTTTTTGTGGCCTTATCTGTGCTTTGGGAAAGAAAAGATGAGAGAGGAGCTTTATCTTATACTGAGAAGGGCATACGAATCGACGAGAGGCATATACCAGGCTATATAATGAAGGGTAACCTGCTGTTATCAATGAAGCGAGCAGAAGCTGCTGTAATTGCCTTCAGGGCAGCTCAAGAGTTGAGACCTGATATTCGTTCATATCAAGGTTTGGTTCAGTCTTATCTCGCTCTCTCTAAAATCAAGGAGGCTTTATATGCTTCAAGGGAGGCTATGAAGGCTATGCCCCAATCTGCAAAGGCTCTAAAATTAGTAGGGGATGTACATGCGAGTAACTCTGGTGGCAGGGAGAAGGCAAAAAAGTTCTATGAGTCAGCCCTTAGGCTGGAACCTGGTTATCTCGGAGCTGCATTAGCTCTGGCTGAGCTCCATGTTATTGAAGGCCGTAACGCGGATGCTGTGTGTCTGCTAGAGCGATATCTCAAGGATTGGGCTGATGACTCTCTACATGTCAAGCTCGCTCAAGTATTTTCTGCAACAAATATGCTGCAAGATGCACTATCACATTTTCAAGCTGCATTGAGGATCAATGTACAGAATGAAGCTGCAAAGAAAGGTTTAGAGCGCTTAGAGAAACAAATGAAGGGGGTTGATCCTGATGCACCTGAAGAGGATGAAGATAACGATGTTGATGATGCTGATGGAGACCAAGATGAGACTGAGCTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_7 TPR_8

Protein Analysis

562

Amino Acids

62.51

Weight (kDa)

6.17

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 9, 111
Acc36I ACCTGC 1 cut(s) 1083
AccII CGCG 1 cut(s) 1406
AciI CCGC 2 cut(s) 57, 1406
AclI AACGTT 2 cut(s) 303, 730
AclWI GGATC 3 cut(s) 830, 1547, 1601
AcsI RAATTY 2 cut(s) 430, 811
AcuI CTGAAG 2 cut(s) 1102, 1641
AcyI GRCGYC 2 cut(s) 6, 108
AfaI GTAC 3 cut(s) 371, 1278, 1548
AfeI AGCGCT 1 cut(s) 1580
AfiI CCNNNNNNNGG 3 cut(s) 276, 1339, 1405
AflIII ACRYGT 1 cut(s) 1462
AgeI ACCGGT 2 cut(s) 276, 453
AgsI TTSAA 9 cut(s) 337, 493, 761, 776, 818, 900, 1218, 1394, 1526
AjnI CCWGG 2 cut(s) 1051, 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
Alw21I GWGCWC 2 cut(s) 42, 1383
Alw26I GTCTC 3 cut(s) 1132, 1653, 1664
AlwI GGATC 3 cut(s) 830, 1547, 1601
AlwNI CAGNNNCTG 1 cut(s) 1103
Ama87I CYCGRG 1 cut(s) 634
Aor51HI AGCGCT 1 cut(s) 1580
AoxI GGCC 6 cut(s) 43, 267, 663, 947, 963, 1396
ApoI RAATTY 2 cut(s) 430, 811
ArsI GACNNNNNNTTYG 2 cut(s) 1131, 1163
AseI ATTAAT 2 cut(s) 315, 830
AsiGI ACCGGT 2 cut(s) 276, 453
Asp700I GAANNNNTTC 2 cut(s) 259, 613
AspLEI GCGC 2 cut(s) 361, 1581
AspS9I GGNCC 3 cut(s) 16, 279, 664
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 2 cut(s) 16, 279
AxyI CCTNAGG 1 cut(s) 1334
BanII GRGCYC 1 cut(s) 1383
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 2 cut(s) 42, 1383
BccI CCATC 4 cut(s) 385, 433, 683, 1649
BceAI ACGGC 2 cut(s) 58, 1383
BcgI CGANNNNNNTGC 2 cut(s) 1015, 1049
BciT130I CCWGG 2 cut(s) 1053, 1347
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 3 cut(s) 1132, 1653, 1664
BfaI CTAG 2 cut(s) 462, 1424
BfoI RGCGCY 1 cut(s) 1582
BfuAI ACCTGC 1 cut(s) 1083
BglI GCCNNNNNGGC 1 cut(s) 1121
BlpI GCTNAGC 1 cut(s) 1377
Bme1390I CCNGG 2 cut(s) 1053, 1347
Bme18I GGWCC 2 cut(s) 16, 279
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 16, 279, 664
BmiI GGNNCC 1 cut(s) 1344
BmrFI CCNGG 2 cut(s) 1053, 1347
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 6 cut(s) 254, 353, 1399, 1498, 1603, 1639
BmuI ACTGGG 1 cut(s) 661
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 514
Bpu1102I GCTNAGC 1 cut(s) 1377
BpuEI CTTGAG 3 cut(s) 1113, 1421, 1461
BsaHI GRCGYC 2 cut(s) 6, 108
BsaI GGTCTC 2 cut(s) 1132, 1653
BsaJI CCNNGG 2 cut(s) 12, 67
BsaWI WCCGGW 2 cut(s) 276, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 1339, 1405
Bse118I RCCGGY 2 cut(s) 276, 453
Bse1I ACTGG 2 cut(s) 270, 667
Bse21I CCTNAGG 1 cut(s) 1334
Bse3DI GCAATG 2 cut(s) 206, 876
BseBI CCWGG 2 cut(s) 1053, 1347
BseDI CCNNGG 2 cut(s) 12, 67
BseGI GGATG 4 cut(s) 865, 1279, 1414, 1633
BseLI CCNNNNNNNGG 3 cut(s) 276, 1339, 1405
BseMI GCAATG 2 cut(s) 206, 876
BseMII CTCAG 4 cut(s) 378, 1008, 1368, 1665
BseNI ACTGG 2 cut(s) 270, 667
BseRI GAGGAG 1 cut(s) 1014
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 1406
BshFI GGCC 6 cut(s) 45, 269, 665, 949, 965, 1398
BshTI ACCGGT 2 cut(s) 276, 453
BsiHKAI GWGCWC 2 cut(s) 42, 1383
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 3 cut(s) 242, 277, 454
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 276, 1339, 1405
BsmAI GTCTC 3 cut(s) 1132, 1653, 1664
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 6 cut(s) 45, 269, 665, 949, 965, 1398
Bso31I GGTCTC 2 cut(s) 1132, 1653
BsoBI CYCGRG 1 cut(s) 634
Bsp1286I GDGCHC 2 cut(s) 42, 1383
Bsp1407I TGTACA 2 cut(s) 1276, 1546
Bsp143I GATC 4 cut(s) 835, 930, 1539, 1606
Bsp1720I GCTNAGC 1 cut(s) 1377
BspACI CCGC 2 cut(s) 57, 1406
BspANI GGCC 6 cut(s) 45, 269, 665, 949, 965, 1398
BspCNI CTCAG 4 cut(s) 379, 1009, 1369, 1666
BspFNI CGCG 1 cut(s) 1406
BspLI GGNNCC 1 cut(s) 1344
BspMI ACCTGC 1 cut(s) 1083
BspPI GGATC 3 cut(s) 830, 1547, 1601
BspQI GCTCTTC 1 cut(s) 604
BspTNI GGTCTC 2 cut(s) 1132, 1653
BsrDI GCAATG 2 cut(s) 206, 876
BsrFI RCCGGY 2 cut(s) 276, 453
BsrGI TGTACA 2 cut(s) 1276, 1546
BsrI ACTGG 2 cut(s) 270, 667
BssAI RCCGGY 2 cut(s) 276, 453
BssECI CCNNGG 2 cut(s) 12, 67
BssMI GATC 4 cut(s) 835, 930, 1539, 1606
BssNI GRCGYC 2 cut(s) 6, 108
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 1053, 1347
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 289, 604, 1617
BstACI GRCGYC 2 cut(s) 6, 108
BstAPI GCANNNNNTGC 3 cut(s) 208, 383, 1103
BstAUI TGTACA 2 cut(s) 1276, 1546
BstC8I GCNNGC 3 cut(s) 204, 1095, 1473
BstDEI CTNAG 8 cut(s) 362, 387, 503, 1017, 1334, 1377, 1582, 1674
BstEII GGTNACC 1 cut(s) 1070
BstF5I GGATG 4 cut(s) 865, 1279, 1414, 1633
BstFNI CGCG 1 cut(s) 1406
BstH2I RGCGCY 1 cut(s) 1582
BstHHI GCGC 2 cut(s) 361, 1581
BstKTI GATC 4 cut(s) 838, 933, 1542, 1609
BstMAI GTCTC 3 cut(s) 1132, 1653, 1664
BstMBI GATC 4 cut(s) 835, 930, 1539, 1606
BstNI CCWGG 2 cut(s) 1053, 1347
BstNSI RCATGY 2 cut(s) 1283, 1466
BstPAI GACNNNNGTC 1 cut(s) 636
BstPI GGTNACC 1 cut(s) 1070
BstSCI CCNGG 2 cut(s) 1051, 1345
BstUI CGCG 1 cut(s) 1406
BstV2I GAAGAC 1 cut(s) 514
Bsu36I CCTNAGG 1 cut(s) 1334
BsuRI GGCC 6 cut(s) 45, 269, 665, 949, 965, 1398
BtgZI GCGATG 1 cut(s) 661
BtsCI GGATG 4 cut(s) 865, 1279, 1414, 1633
BtsIMutI CAGTG 3 cut(s) 263, 674, 933
BveI ACCTGC 1 cut(s) 1083
Cac8I GCNNGC 3 cut(s) 204, 1095, 1473
CaiI CAGNNNCTG 1 cut(s) 1103
CfoI GCGC 2 cut(s) 361, 1581
Cfr10I RCCGGY 2 cut(s) 276, 453
Cfr13I GGNCC 3 cut(s) 16, 279, 664
CsiI ACCWGGT 1 cut(s) 1345
Csp6I GTAC 3 cut(s) 370, 1277, 1547
CspAI ACCGGT 2 cut(s) 276, 453
CviAII CATG 5 cut(s) 34, 920, 1280, 1385, 1463
CviQI GTAC 3 cut(s) 370, 1277, 1547
DdeI CTNAG 8 cut(s) 362, 387, 503, 1017, 1334, 1377, 1582, 1674
DpnI GATC 4 cut(s) 837, 932, 1541, 1608
DpnII GATC 4 cut(s) 835, 930, 1539, 1606
Eam1104I CTCTTC 3 cut(s) 289, 604, 1617
EarI CTCTTC 3 cut(s) 289, 604, 1617
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 1381
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 1383
Eco31I GGTCTC 2 cut(s) 1132, 1653
Eco32I GATATC 1 cut(s) 1433
Eco47I GGWCC 2 cut(s) 16, 279
Eco47III AGCGCT 1 cut(s) 1580
Eco53kI GAGCTC 1 cut(s) 1381
Eco57I CTGAAG 2 cut(s) 1102, 1641
Eco81I CCTNAGG 1 cut(s) 1334
Eco88I CYCGRG 1 cut(s) 634
Eco91I GGTNACC 1 cut(s) 1070
EcoICRI GAGCTC 1 cut(s) 1381
EcoO65I GGTNACC 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 1051, 1345
EcoRV GATATC 1 cut(s) 1433
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 1383
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 5 cut(s) 37, 923, 1283, 1388, 1466
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 1 cut(s) 235
FatI CATG 5 cut(s) 33, 919, 1279, 1384, 1462
FauNDI CATATG 1 cut(s) 841
FbaI TGATCA 1 cut(s) 930
FokI GGATG 4 cut(s) 872, 1286, 1421, 1640
FriOI GRGCYC 1 cut(s) 1383
FspBI CTAG 2 cut(s) 462, 1424
GlaI GCGC 2 cut(s) 360, 1580
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 1582
HaeIII GGCC 6 cut(s) 45, 269, 665, 949, 965, 1398
HapII CCGG 3 cut(s) 242, 277, 454
HhaI GCGC 2 cut(s) 361, 1581
Hin1I GRCGYC 2 cut(s) 6, 108
Hin1II CATG 5 cut(s) 37, 923, 1283, 1388, 1466
Hin6I GCGC 2 cut(s) 359, 1579
HinP1I GCGC 2 cut(s) 359, 1579
HpaII CCGG 3 cut(s) 242, 277, 454
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 892, 1358
Hpy188III TCNNGA 7 cut(s) 164, 252, 337, 462, 704, 1130, 1610
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 2 cut(s) 110, 1040
HpyAV CCTTC 7 cut(s) 1015, 1060, 1126, 1225, 1300, 1388, 1591
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 4 cut(s) 6, 108, 303, 730
HpyF3I CTNAG 8 cut(s) 362, 387, 503, 1017, 1334, 1377, 1582, 1674
HpySE526I ACGT 4 cut(s) 6, 108, 303, 730
Hsp92I GRCGYC 2 cut(s) 6, 108
Hsp92II CATG 5 cut(s) 37, 923, 1283, 1388, 1466
HspAI GCGC 2 cut(s) 359, 1579
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 4 cut(s) 835, 930, 1539, 1606
LguI GCTCTTC 1 cut(s) 604
LmnI GCTCC 4 cut(s) 37, 1001, 1358, 1386
LweI GCATC 6 cut(s) 254, 353, 1399, 1498, 1603, 1639
MabI ACCWGGT 1 cut(s) 1345
MaeI CTAG 2 cut(s) 462, 1424
MaeII ACGT 4 cut(s) 6, 108, 303, 730
MaeIII GTNAC 7 cut(s) 109, 164, 753, 847, 1070, 1286, 1400
MalI GATC 4 cut(s) 837, 932, 1541, 1608
MboI GATC 4 cut(s) 835, 930, 1539, 1606
MboII GAAGA 6 cut(s) 78, 276, 514, 621, 1634, 1643
MhlI GDGCHC 2 cut(s) 42, 1383
MluCI AATT 8 cut(s) 430, 548, 762, 811, 831, 911, 1110, 1262
MlyI GAGTC 6 cut(s) 146, 586, 626, 646, 1334, 1448
MroXI GAANNNNTTC 2 cut(s) 259, 613
MseI TTAA 3 cut(s) 299, 315, 830
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 242, 277, 454
MspR9I CCNGG 2 cut(s) 1053, 1347
MvaI CCWGG 2 cut(s) 1053, 1347
MvnI CGCG 1 cut(s) 1406
NdeI CATATG 1 cut(s) 841
NdeII GATC 4 cut(s) 835, 930, 1539, 1606
NlaIII CATG 5 cut(s) 37, 923, 1283, 1388, 1466
NlaIV GGNNCC 1 cut(s) 1344
NmeAIII GCCGAG 3 cut(s) 48, 126, 154
NmuCI GTSAC 3 cut(s) 109, 164, 847
NspI RCATGY 2 cut(s) 1283, 1466
PaeR7I CTCGAG 1 cut(s) 634
PciI ACATGT 1 cut(s) 1462
PciSI GCTCTTC 1 cut(s) 604
PdmI GAANNNNTTC 2 cut(s) 259, 613
PfeI GAWTC 5 cut(s) 238, 469, 583, 938, 1032
PinAI ACCGGT 2 cut(s) 276, 453
PleI GAGTC 6 cut(s) 146, 586, 626, 645, 1333, 1448
PpsI GAGTC 6 cut(s) 146, 586, 626, 645, 1333, 1448
PscI ACATGT 1 cut(s) 1462
PshAI GACNNNNGTC 1 cut(s) 636
PshBI ATTAAT 2 cut(s) 315, 830
Psp124BI GAGCTC 1 cut(s) 1383
Psp1406I AACGTT 2 cut(s) 303, 730
Psp6I CCWGG 2 cut(s) 1051, 1345
PspEI GGTNACC 1 cut(s) 1070
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 1051, 1345
PspN4I GGNNCC 1 cut(s) 1344
PspPI GGNCC 3 cut(s) 16, 279, 664
PspXI VCTCGAGB 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 1103
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 3 cut(s) 371, 1278, 1548
RsaNI GTAC 3 cut(s) 370, 1277, 1547
SacI GAGCTC 1 cut(s) 1383
SapI GCTCTTC 1 cut(s) 604
SaqAI TTAA 3 cut(s) 299, 315, 830
Sau3AI GATC 4 cut(s) 835, 930, 1539, 1606
Sau96I GGNCC 3 cut(s) 16, 279, 664
SchI GAGTC 6 cut(s) 146, 586, 626, 646, 1334, 1448
ScrFI CCNGG 2 cut(s) 1053, 1347
SduI GDGCHC 2 cut(s) 42, 1383
SexAI ACCWGGT 1 cut(s) 1345
SfaNI GCATC 6 cut(s) 254, 353, 1399, 1498, 1603, 1639
Sfr274I CTCGAG 1 cut(s) 634
SinI GGWCC 2 cut(s) 16, 279
SlaI CTCGAG 1 cut(s) 634
SmlI CTYRAG 4 cut(s) 634, 1128, 1436, 1476
SmoI CTYRAG 4 cut(s) 634, 1128, 1436, 1476
Sse9I AATT 8 cut(s) 430, 548, 762, 811, 831, 911, 1110, 1262
SsiI CCGC 2 cut(s) 57, 1406
SspMI CTAG 2 cut(s) 462, 1424
SstI GAGCTC 1 cut(s) 1383
StyD4I CCNGG 2 cut(s) 1051, 1345
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 4 cut(s) 9, 111, 306, 733
TaqI TCGA 4 cut(s) 525, 635, 826, 1035
TasI AATT 8 cut(s) 430, 548, 762, 811, 831, 911, 1110, 1262
TatI WGTACW 2 cut(s) 1276, 1546
TfiI GAWTC 5 cut(s) 238, 469, 583, 938, 1032
Tru1I TTAA 3 cut(s) 299, 315, 830
Tru9I TTAA 3 cut(s) 299, 315, 830
TscAI CASTG 3 cut(s) 270, 674, 940
TseFI GTSAC 3 cut(s) 109, 164, 847
Tsp45I GTSAC 3 cut(s) 109, 164, 847
TspRI CASTG 3 cut(s) 270, 674, 940
VpaK11BI GGWCC 2 cut(s) 16, 279
VspI ATTAAT 2 cut(s) 315, 830
XapI RAATTY 2 cut(s) 430, 811
XbaI TCTAGA 1 cut(s) 461
XceI RCATGY 2 cut(s) 1283, 1466
XhoI CTCGAG 1 cut(s) 634
XmnI GAANNNNTTC 2 cut(s) 259, 613
XspI CTAG 2 cut(s) 462, 1424
ZraI GACGTC 2 cut(s) 7, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.