Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0020320

Physical Location & Seq

Genomic Coordinates Forward (+)

23796811 .. 23797915

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGGCTGAGTGAAGGGCTGCAGCATTCGGAATCACCTAGAATAGTTGCACAGTCAAGTGTTAGTCTTGATGAAGAAAAATTGGGAAGATTGTCACCCAAGTATAAGAAACGCAGAGTCTCTTGTGTTCGTGATTTTCCACCAGGGTGTGGACCATTTGCTCACTTGAACAATTCAAGACCTGTTCAAGAGGTACCTTCAATACCTTCAACTGTTAAATATTATCCTCGAAGGATAGTAGAAGCTGTTCGGGACTTTCCTCCTCTCTGTGGTAGAAATGCTTTTCTTGAGGCCAAGAATTTGAATCAAGATGAGTCAGTTATGGGTGACAAATCATTCTCATCAATCACAACAAAGACTAGTGTGGAATATACACAAGTTGGGGACAAAGTTCAACCTACAACAGAGAAGAAAAGGCCGAGGGAAGATCCTTTAGATTCGTCTTGTCAAATTAACCAACTGCATGGAAAAGCTTTTGAAAGTTCGGAACTTGCATCTCGTAGACTGGTTGTGCTGGGTTTGATGGCTTCCTCAAATAACCAACTGCATAAGGGAGGCTCAATCAACCAACTGCATACAGAAGGCTCAAATAACCAACTGCATAAAGAAGACTCAAATAACCAACTGAGTAAAGAAGATTTTAAGAGTTGGAAACTTACATCTCATAGAGTGGTTGTGCTGGGTTCGATGGCTGCCTCAAATTCTCTATGTATGAAGAGGAGGAGGGGTCATAACTTTCCTAGTCCTGGCTTCCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

254

Amino Acids

28.16

Weight (kDa)

9.49

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020320)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20661
rosa_multiflora	Rmu_ssc0000281.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368070
rosa_rugosa	Rorug04G0208300
rosa_samantha	Rh4AG265300 Rh4BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	502
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	298, 700
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	149, 269, 746
AgsI	TTSAA	8 cut(s)	169, 177, 188, 201, 210, 304, 395, 479
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	142, 745
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	245, 473
AluI	AGCT	2 cut(s)	245, 473
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	2 cut(s)	291, 416
ApeKI	GCWGC	3 cut(s)	19, 22, 692
ApoI	RAATTY	2 cut(s)	298, 700
Asp700I	GAANNNNTTC	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	27, 87, 338
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	6, 34, 679
BccI	CCATC	2 cut(s)	517, 682
BciT130I	CCWGG	2 cut(s)	144, 747
BcoDI	GTCTC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	3 cut(s)	39, 360, 741
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	3 cut(s)	20, 23, 693
BlsI	GCNGC	3 cut(s)	21, 24, 694
Bme1390I	CCNGG	2 cut(s)	144, 747
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	144, 747
BmsI	GCATC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	143, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 269, 746
Bse1I	ACTGG	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	144, 747
BseDI	CCNNGG	2 cut(s)	143, 419
BseLI	CCNNNNNNNGG	3 cut(s)	149, 269, 746
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	3 cut(s)	252, 733, 736
BseXI	GCAGC	3 cut(s)	6, 34, 679
BseYI	CCCAGC	2 cut(s)	514, 679
BshFI	GGCC	2 cut(s)	293, 418
BshNI	GGYRCC	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	266, 398
BslI	CCNNNNNNNGG	3 cut(s)	149, 269, 746
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	266, 398
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	293, 418
Bsp143I	GATC	1 cut(s)	427
BspANI	GGCC	2 cut(s)	293, 418
BspCNI	CTCAG	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	143, 419
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	144, 747
Bst4CI	ACNGT	2 cut(s)	54, 214
Bst6I	CTCTTC	1 cut(s)	710
BstDEI	CTNAG	2 cut(s)	8, 626
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	144, 747
BstSCI	CCNGG	2 cut(s)	142, 745
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	6, 34, 679
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	293, 418
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	464
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	8, 626
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	142, 745
FaeI	CATG	1 cut(s)	467
FaqI	GGGAC	2 cut(s)	266, 398
FatI	CATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	20, 23, 693
Fsp4HI	GCNGC	3 cut(s)	20, 23, 693
FspBI	CTAG	3 cut(s)	39, 360, 741
GluI	GCNGC	3 cut(s)	20, 23, 693
GsaI	CCCAGC	2 cut(s)	518, 683
HaeIII	GGCC	2 cut(s)	293, 418
Hin1II	CATG	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	6 cut(s)	32, 117, 304, 314, 437, 611
HphI	GGTGA	3 cut(s)	27, 87, 338
Hpy166II	GTNNAC	2 cut(s)	152, 503
Hpy188I	TCNGA	2 cut(s)	31, 487
Hpy188III	TCNNGA	8 cut(s)	68, 131, 177, 188, 251, 287, 308, 754
Hpy8I	GTNNAC	2 cut(s)	152, 503
HpyAV	CCTTC	5 cut(s)	8, 207, 216, 225, 575
HpyCH4III	ACNGT	2 cut(s)	54, 214
HpyCH4V	TGCA	7 cut(s)	22, 50, 463, 494, 547, 574, 601
HpyF3I	CTNAG	2 cut(s)	8, 626
Hsp92II	CATG	1 cut(s)	467
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	7 cut(s)	129, 156, 195, 491, 500, 665, 732
Lsp1109I	GCAGC	3 cut(s)	6, 34, 679
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	3 cut(s)	39, 360, 741
MaeIII	GTNAC	2 cut(s)	93, 326
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	7 cut(s)	86, 99, 421, 437, 620, 647, 727
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	5 cut(s)	80, 172, 298, 450, 700
MlyI	GAGTC	3 cut(s)	126, 323, 605
MmeI	TCCRAC	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	4 cut(s)	216, 453, 642, 760
MslI	CAYNNNNRTG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	144, 747
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	144, 747
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	1 cut(s)	195
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	2 cut(s)	93, 326
OliI	CACNNNNGTG	1 cut(s)	145
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	32, 304, 437
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	21, 24, 694
PleI	GAGTC	3 cut(s)	125, 322, 605
PpsI	GAGTC	3 cut(s)	125, 322, 605
Psp6I	CCWGG	2 cut(s)	142, 745
PspFI	CCCAGC	2 cut(s)	514, 679
PspGI	CCWGG	2 cut(s)	142, 745
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	152
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	4 cut(s)	216, 453, 642, 760
SatI	GCNGC	3 cut(s)	20, 23, 693
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	3 cut(s)	126, 323, 605
ScrFI	CCNGG	2 cut(s)	144, 747
SetI	ASST	8 cut(s)	40, 184, 195, 199, 208, 247, 400, 475
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	5 cut(s)	80, 172, 298, 450, 700
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	3 cut(s)	39, 360, 741
StyD4I	CCNGG	2 cut(s)	142, 745
TaaI	ACNGT	2 cut(s)	54, 214
TaqI	TCGA	2 cut(s)	229, 686
TasI	AATT	5 cut(s)	80, 172, 298, 450, 700
TfiI	GAWTC	3 cut(s)	32, 304, 437
Tru1I	TTAA	4 cut(s)	216, 453, 642, 760
Tru9I	TTAA	4 cut(s)	216, 453, 642, 760
TseFI	GTSAC	2 cut(s)	93, 326
TseI	GCWGC	3 cut(s)	19, 22, 692
Tsp45I	GTSAC	2 cut(s)	93, 326
TspDTI	ATGAA	2 cut(s)	87, 728
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	298, 700
XmiI	GTMKAC	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	3 cut(s)	39, 360, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.