Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020320

Physical Location & Seq

Genomic Coordinates Forward (+)

58106398 .. 58107765

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGGTGGTCGAGGGGCTGCAGCGTTCGGAATCACCTAGAACAATTGTACCGACAAATGCTAGTCATGGTGAAGAAAAATTGGGAAGATTGTTGCCCAAGTATAAGAAACGCAGAGTCTCTTCTGTTCGTGATTTTCCACCAGGCTGTGGACCATTTGCTCACTTGAACAATTCGAGACCTGTTCAGGAGGTACCTTCAATTGTTAAAAATTATCCTCGGAGAATAGTAGAAGCTGTTCGGGAGTTCCCTCCACTCTGTGGTATAAATGCTTTTGTTGAGGCCAAGAATTTGAGTCCAGAGAAGTCAGTTATGGGTGACGAACCATCATCATCAGACACAGCAAAGACTACCGTGAAACAAACACAAGTTCAACCTACAACTGAAAAGAAAAGGCCTAGGGAAGATCCTTTAGATTTGTCTTATCAAATTAACCAACTGCATGGAAAAGCTTTTGAGAGGTCGGAACTTGTATCTCATAGAGTGGTTGTGCTGGGTTTGATGGCTGCCTCAAATAACCAACTGCATAGAGAAGATTCTAAGTTGCATACCAACTGCATAGAGAAGATTCCAAGAGTTCAAAACTTGCATACCAACTGCATAGAGAAGATCTTAAGAGTTCGAAACTTGCATCTCATAGAGCGGTTGTGCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

219

Amino Acids

24.81

Weight (kDa)

9.58

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020320)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20661
rosa_multiflora	Rmu_ssc0000281.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368070
rosa_rugosa	Rorug04G0208300
rosa_samantha	Rh4AG265300 Rh4BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	2 cut(s)	149, 260
AccBSI	CCGCTC	1 cut(s)	643
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	51, 195
AfiI	CCNNNNNNNGG	2 cut(s)	149, 260
AflII	CTTAAG	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	169, 201, 374, 581
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	236, 452
AluI	AGCT	2 cut(s)	236, 452
Alw26I	GTCTC	2 cut(s)	124, 172
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	282, 395
ApeKI	GCWGC	3 cut(s)	19, 22, 506
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	27, 83, 329
AsuII	TTCGAA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	152
AvrII	CCTAGG	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	6, 34, 493
BccI	CCATC	2 cut(s)	334, 496
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	124, 172
BfaI	CTAG	3 cut(s)	39, 63, 399
BfmI	CTRYAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	613
BglII	AGATCT	1 cut(s)	609
BisI	GCNGC	3 cut(s)	20, 23, 507
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	21, 24, 508
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	640
Bpu14I	TTCGAA	1 cut(s)	622
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	218, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 260
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	218, 398
BseLI	CCNNNNNNNGG	2 cut(s)	149, 260
BseXI	GCAGC	3 cut(s)	6, 34, 493
BseYI	CCCAGC	2 cut(s)	493, 651
BshFI	GGCC	2 cut(s)	284, 397
BshNI	GGYRCC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	149, 260
BsmAI	GTCTC	2 cut(s)	124, 172
BsnI	GGCC	2 cut(s)	284, 397
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	622
Bsp143I	GATC	2 cut(s)	406, 609
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	2 cut(s)	284, 397
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	218, 398
BssMI	GATC	2 cut(s)	406, 609
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	613
BstBI	TTCGAA	1 cut(s)	622
BstDEI	CTNAG	1 cut(s)	540
BstKTI	GATC	2 cut(s)	409, 612
BstMAI	GTCTC	2 cut(s)	124, 172
BstMBI	GATC	2 cut(s)	406, 609
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	6, 34, 493
BstX2I	RGATCY	2 cut(s)	406, 609
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	2 cut(s)	406, 609
BsuRI	GGCC	2 cut(s)	284, 397
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	50, 194
CviAII	CATG	2 cut(s)	68, 443
CviJI	RGCY	7 cut(s)	19, 147, 236, 284, 397, 452, 506
CviKI_1	RGCY	7 cut(s)	19, 147, 236, 284, 397, 452, 506
CviQI	GTAC	2 cut(s)	50, 194
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	408, 611
DpnII	GATC	2 cut(s)	406, 609
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	398
Eco147I	AGGCCT	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	2 cut(s)	71, 446
FatI	CATG	2 cut(s)	67, 442
Fnu4HI	GCNGC	3 cut(s)	20, 23, 507
Fsp4HI	GCNGC	3 cut(s)	20, 23, 507
FspBI	CTAG	3 cut(s)	39, 63, 399
GluI	GCNGC	3 cut(s)	20, 23, 507
GsaI	CCCAGC	2 cut(s)	497, 655
HaeIII	GGCC	2 cut(s)	284, 397
Hin1II	CATG	2 cut(s)	71, 446
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	5 cut(s)	32, 117, 295, 536, 568
HphI	GGTGA	3 cut(s)	27, 83, 329
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	4 cut(s)	31, 222, 337, 466
Hpy188III	TCNNGA	5 cut(s)	131, 177, 188, 242, 299
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	8 cut(s)	22, 442, 526, 547, 558, 589, 600, 631
HpyF3I	CTNAG	1 cut(s)	540
Hsp92II	CATG	2 cut(s)	71, 446
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	406, 609
LpnPI	CCDG	7 cut(s)	129, 156, 173, 195, 312, 479, 637
Lsp1109I	GCAGC	3 cut(s)	6, 34, 493
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	3 cut(s)	39, 63, 399
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	408, 611
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	2 cut(s)	406, 609
MboII	GAAGA	7 cut(s)	86, 99, 114, 416, 545, 577, 619
MfeI	CAATTG	2 cut(s)	45, 201
MflI	RGATCY	2 cut(s)	406, 609
MluCI	AATT	7 cut(s)	45, 80, 172, 201, 211, 289, 429
MlyI	GAGTC	2 cut(s)	126, 304
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	7 cut(s)	7, 184, 228, 261, 274, 453, 520
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	207, 432, 614
MspCI	CTTAAG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	45, 201
MvaI	CCWGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	406, 609
NlaIII	CATG	2 cut(s)	71, 446
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	32, 536, 568
PflMI	CCANNNNNTGG	2 cut(s)	149, 260
PkrI	GCNGC	3 cut(s)	21, 24, 508
PleI	GAGTC	2 cut(s)	125, 303
PpsI	GAGTC	2 cut(s)	125, 303
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	493, 651
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	152
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	406, 609
RsaI	GTAC	2 cut(s)	51, 195
RsaNI	GTAC	2 cut(s)	50, 194
SaqAI	TTAA	3 cut(s)	207, 432, 614
SatI	GCNGC	3 cut(s)	20, 23, 507
Sau3AI	GATC	2 cut(s)	406, 609
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	126, 304
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	8 cut(s)	40, 184, 195, 199, 238, 379, 454, 464
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	7 cut(s)	45, 80, 172, 201, 211, 289, 429
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	3 cut(s)	39, 63, 399
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	3 cut(s)	12, 176, 622
TasI	AATT	7 cut(s)	45, 80, 172, 201, 211, 289, 429
TfiI	GAWTC	3 cut(s)	32, 536, 568
Tru1I	TTAA	3 cut(s)	207, 432, 614
Tru9I	TTAA	3 cut(s)	207, 432, 614
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	19, 22, 506
Tsp45I	GTSAC	1 cut(s)	317
Van91I	CCANNNNNTGG	2 cut(s)	149, 260
Vha464I	CTTAAG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	39, 63, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.