Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0020320

Physical Location & Seq

Genomic Coordinates Reverse (-)

559 .. 1281

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgggggtggtcgaggggctgcagcgttcagaatcacctagaacaattgttccgacgactagcatttatggtgaagaagaattgggaagattgtttcccaagtataagaaacgcagagtcacttctgttcgtgatttcccaccaggctgtggaccagttgctcacttgaacaattcgagacctgttcaagaggtaccttcaattgttaaaaattatcctcggagaatagtagaagctgttcgggagtttcctccactctgtggtataaatgcttttgttgaggccaagaatttgagtcaagagaagtcagttatgggtgacgaaccatcatcatcagacacagcaaagactactgtgaaacaaacacaagttcaacctacaactgaaaagaaaagtcctagggaagatccattagatttgtcttatcaaattaaccgactgcatggaaaagcttttgagaggtcggaacttgcatctcatagagtggtcgtgctgggtttgatggctgcctcaaataaccaactgcatagagaagattccaagagttcaaaagttgcatcccaactccatagagaagattctaagagttcaaaacttgcataccaactgcatagagaagatcttaagagttcgaaacttgcatctcatagagcggttgtgctgggtttgatggctgcctcaaattctgtgtgtatgaagaggagaaggggtctacaagcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

240

Amino Acids

26.73

Weight (kDa)

9.83

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020320)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20661
rosa_multiflora	Rmu_ssc0000281.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368070
rosa_rugosa	Rorug04G0208300
rosa_samantha	Rh4AG265300 Rh4BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	2 cut(s)	149, 260
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	712
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	289, 682
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	149, 260
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	6 cut(s)	169, 188, 201, 374, 549, 591
AjnI	CCWGG	1 cut(s)	142
AloI	GAACNNNNNNTCC	2 cut(s)	34, 66
AluBI	AGCT	2 cut(s)	236, 452
AluI	AGCT	2 cut(s)	236, 452
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	4 cut(s)	19, 22, 506, 674
ApoI	RAATTY	2 cut(s)	289, 682
Asp700I	GAANNNNTTC	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	27, 83, 329
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	152
AvrII	CCTAGG	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	4 cut(s)	6, 34, 493, 661
BccI	CCATC	3 cut(s)	334, 496, 664
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	3 cut(s)	39, 60, 399
BfmI	CTRYAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	623
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	4 cut(s)	20, 23, 507, 675
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	4 cut(s)	21, 24, 508, 676
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	482, 566, 650
Bpu14I	TTCGAA	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	218, 398
BsaXI	ACNNNNNCTCC	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 260
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	218, 398
BseGI	GGATG	1 cut(s)	557
BseLI	CCNNNNNNNGG	2 cut(s)	149, 260
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	715
BseXI	GCAGC	4 cut(s)	6, 34, 493, 661
BseYI	CCCAGC	2 cut(s)	493, 661
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	149, 260
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	406, 619
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	218, 398
BssMI	GATC	2 cut(s)	406, 619
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	692
BstAFI	CTTAAG	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	632
BstDEI	CTNAG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	409, 622
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	406, 619
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	6, 34, 493, 661
BstX2I	RGATCY	2 cut(s)	406, 619
BstYI	RGATCY	2 cut(s)	406, 619
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	7 cut(s)	19, 147, 236, 284, 452, 506, 674
CviKI_1	RGCY	7 cut(s)	19, 147, 236, 284, 452, 506, 674
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	2 cut(s)	408, 621
DpnII	GATC	2 cut(s)	406, 619
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	1 cut(s)	446
FatI	CATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	20, 23, 507, 675
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	4 cut(s)	20, 23, 507, 675
FspBI	CTAG	3 cut(s)	39, 60, 399
GluI	GCNGC	4 cut(s)	20, 23, 507, 675
GsaI	CCCAGC	2 cut(s)	497, 665
HaeIII	GGCC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	5 cut(s)	32, 117, 295, 536, 578
HphI	GGTGA	3 cut(s)	27, 83, 329
Hpy166II	GTNNAC	2 cut(s)	152, 713
Hpy188I	TCNGA	5 cut(s)	31, 54, 222, 337, 466
Hpy188III	TCNNGA	5 cut(s)	131, 177, 188, 242, 299
Hpy8I	GTNNAC	2 cut(s)	152, 713
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	207, 699
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	8 cut(s)	22, 442, 473, 526, 557, 599, 610, 641
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	446
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	406, 619
LpnPI	CCDG	6 cut(s)	129, 156, 168, 195, 479, 647
Lsp1109I	GCAGC	4 cut(s)	6, 34, 493, 661
LweI	GCATC	3 cut(s)	482, 566, 650
MaeI	CTAG	3 cut(s)	39, 60, 399
MaeIII	GTNAC	2 cut(s)	118, 317
MalI	GATC	2 cut(s)	408, 621
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	2 cut(s)	406, 619
MboII	GAAGA	8 cut(s)	86, 89, 99, 416, 545, 587, 629, 709
MfeI	CAATTG	2 cut(s)	45, 201
MflI	RGATCY	2 cut(s)	406, 619
MluCI	AATT	8 cut(s)	45, 80, 172, 201, 211, 289, 429, 682
MlyI	GAGTC	2 cut(s)	126, 304
MmeI	TCCRAC	2 cut(s)	77, 444
MnlI	CCTC	9 cut(s)	7, 184, 228, 261, 274, 453, 520, 688, 693
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	207, 432, 624
MspCI	CTTAAG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	45, 201
MvaI	CCWGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	406, 619
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	118, 317
NspV	TTCGAA	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	32, 536, 578
PflMI	CCANNNNNTGG	2 cut(s)	149, 260
PkrI	GCNGC	4 cut(s)	21, 24, 508, 676
PleI	GAGTC	2 cut(s)	125, 303
PpsI	GAGTC	2 cut(s)	125, 303
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	493, 661
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	152
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	406, 619
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	207, 432, 624
SatI	GCNGC	4 cut(s)	20, 23, 507, 675
Sau3AI	GATC	2 cut(s)	406, 619
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	126, 304
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	8 cut(s)	40, 184, 195, 199, 238, 379, 454, 464
SfaNI	GCATC	3 cut(s)	482, 566, 650
SfcI	CTRYAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	8 cut(s)	45, 80, 172, 201, 211, 289, 429, 682
SsiI	CCGC	1 cut(s)	653
SspMI	CTAG	3 cut(s)	39, 60, 399
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	3 cut(s)	12, 176, 632
TasI	AATT	8 cut(s)	45, 80, 172, 201, 211, 289, 429, 682
TfiI	GAWTC	3 cut(s)	32, 536, 578
Tru1I	TTAA	3 cut(s)	207, 432, 624
Tru9I	TTAA	3 cut(s)	207, 432, 624
TseFI	GTSAC	2 cut(s)	118, 317
TseI	GCWGC	4 cut(s)	19, 22, 506, 674
Tsp45I	GTSAC	2 cut(s)	118, 317
TspDTI	ATGAA	1 cut(s)	710
Van91I	CCANNNNNTGG	2 cut(s)	149, 260
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	289, 682
XmaJI	CCTAGG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	39, 60, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.