Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0020320

Physical Location & Seq

Genomic Coordinates Forward (+)

49831453 .. 49832729

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGGTGGTCGAGGGGCTGCACCGTTCGGAATCACCTAGAACAATTGCACCGACAAATGCTAGTCATGGTGAAGAAAAATTGGGAAGATTGTTGCCCAAGTATAAGAAACGCAGAGTCTCTTCTGTTCGTGATTTTCCACCAGGCTGTGGACCATTTGCTCACTTGAACAATTCGAGACCTGTTCAAGAGGTACCTTCAGTTGTTAAAAATTATCCTCGGAGAATAGTAGAAGCTGTTCGGGAGTTTCCTCCACTCTGTGGTATAAATGCTTTTGTCGAGGCCAAGAATTTGAGTCAAGAGAAGTCAGTTATGGGTGACAAACCATCATCATCAAACACAGCAAAGACTACTGTGAAACAAACACAATTTCCTCAACTTAATAATGAGAAAGTAAGAAACTGGGATAAGAGTCTGGTTTACAATTCAAGGTTACACATAGCAGAGATAAAACAGATCTTTCAAACTGAGTTCATGCGTCTGCAACAGAAATTAATGGCCCTCGCTATGAGCGTCTATTTCTCACAACTCGAATGTTTACTCTGGCAGAGATCAACAGCTTTGATCAACATACTGATGAATTTTAGCATGACATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

9.88

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020320)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20661
rosa_multiflora	Rmu_ssc0000281.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368070
rosa_rugosa	Rorug04G0208300
rosa_samantha	Rh4AG265300 Rh4BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	2 cut(s)	149, 260
AcsI	RAATTY	2 cut(s)	289, 580
AcuI	CTGAAG	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	149, 260
AgsI	TTSAA	4 cut(s)	169, 188, 429, 464
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	236, 560
AluI	AGCT	2 cut(s)	236, 560
Alw26I	GTCTC	2 cut(s)	124, 172
AoxI	GGCC	2 cut(s)	282, 498
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	289, 580
AseI	ATTAAT	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	152, 499
AsuHPI	GGTGA	3 cut(s)	27, 83, 329
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	144
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	124, 172
BfaI	CTAG	2 cut(s)	39, 63
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 499
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 260
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	149, 260
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	2 cut(s)	284, 500
BshNI	GGYRCC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	149, 260
BsmAI	GTCTC	2 cut(s)	124, 172
BsnI	GGCC	2 cut(s)	284, 500
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	456, 551, 564
BspANI	GGCC	2 cut(s)	284, 500
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	456, 551, 564
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	26, 355
Bst6I	CTCTTC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	468
BstKTI	GATC	3 cut(s)	459, 554, 567
BstMAI	GTCTC	2 cut(s)	124, 172
BstMBI	GATC	3 cut(s)	456, 551, 564
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	284, 500
Cfr13I	GGNCC	2 cut(s)	152, 499
CseI	GACGC	2 cut(s)	467, 502
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	68, 475, 589
CviJI	RGCY	6 cut(s)	19, 147, 236, 284, 500, 560
CviKI_1	RGCY	6 cut(s)	19, 147, 236, 284, 500, 560
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	458, 553, 566
DpnII	GATC	3 cut(s)	456, 551, 564
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	71, 478, 592
FatI	CATG	3 cut(s)	67, 474, 588
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	2 cut(s)	39, 63
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	284, 500
HgaI	GACGC	2 cut(s)	467, 502
Hin1II	CATG	3 cut(s)	71, 478, 592
HinfI	GANTC	4 cut(s)	32, 117, 295, 412
HphI	GGTGA	3 cut(s)	27, 83, 329
Hpy166II	GTNNAC	3 cut(s)	152, 421, 539
Hpy188I	TCNGA	2 cut(s)	31, 222
Hpy188III	TCNNGA	5 cut(s)	131, 177, 188, 242, 299
Hpy8I	GTNNAC	3 cut(s)	152, 421, 539
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	2 cut(s)	26, 355
HpyCH4V	TGCA	3 cut(s)	22, 50, 484
HpyF3I	CTNAG	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	71, 478, 592
KpnI	GGTACC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	3 cut(s)	456, 551, 564
LpnPI	CCDG	6 cut(s)	129, 156, 195, 388, 401, 529
Lsp1109I	GCAGC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	39, 63
MaeIII	GTNAC	2 cut(s)	317, 432
MalI	GATC	3 cut(s)	458, 553, 566
MboI	GATC	3 cut(s)	456, 551, 564
MboII	GAAGA	3 cut(s)	86, 99, 114
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	9 cut(s)	45, 80, 172, 211, 289, 368, 424, 491, 580
MlyI	GAGTC	3 cut(s)	126, 304, 421
MnlI	CCTC	7 cut(s)	7, 184, 228, 261, 274, 384, 512
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	207, 381, 494
MslI	CAYNNNNRTG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	456, 551, 564
NlaIII	CATG	3 cut(s)	71, 478, 592
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	2 cut(s)	149, 260
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	3 cut(s)	125, 303, 420
PpsI	GAGTC	3 cut(s)	125, 303, 420
PshBI	ATTAAT	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	152, 499
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	207, 381, 494
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	456, 551, 564
Sau96I	GGNCC	2 cut(s)	152, 499
SchI	GAGTC	3 cut(s)	126, 304, 421
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	7 cut(s)	40, 184, 195, 199, 238, 434, 562
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	9 cut(s)	45, 80, 172, 211, 289, 368, 424, 491, 580
SspMI	CTAG	2 cut(s)	39, 63
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	26, 355
TaqI	TCGA	4 cut(s)	12, 176, 279, 531
TasI	AATT	9 cut(s)	45, 80, 172, 211, 289, 368, 424, 491, 580
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	207, 381, 494
Tru9I	TTAA	3 cut(s)	207, 381, 494
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	463, 593
Van91I	CCANNNNNTGG	2 cut(s)	149, 260
VpaK11BI	GGWCC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	2 cut(s)	289, 580
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	2 cut(s)	39, 63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.