FvH4_4g26741

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0021067
Physical Location & Seq
Forward (+)
28020521 .. 28022431
1911 bp
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UTR
Exon/CDS
Intron
FvH4_4g26741.t1

Sequence Viewer

Length: 624 bp
ATGAGAATAGGAGCGGATGAATCTGATATCCCTACCAGGATAGAATCTGGCGTCAGGACAGATCAAGCTTCGATATTGAGTGACGTGGTTGATCATATGAAAGCTCTTCTAGTTCAACGTCAAATGCTGAGCATGACAGGACACCCTATGTGGCTGGCTGGGGTTCCAAACAGTATTACACAACAAATACCCCAATACATGCCATATATGGGAATGGGAATGGGTTCTAATATGTATGGTTATTCGGTACGTGGAACAAGCCATCCGTTTTTATCTATTCCCTCAGCTCCCACTCCAAGTTTGCCTATACTTTCTGAATCATGTATCGTTTCATGCCCTCAATTCCAAGTGCCCCCTCCGCCTCTATCTCCGACGACATTCATTGCTGCACAAGTAAAGCCGACCGCCACTACCACGTTCAATACTATTGATACTGTTGTTCAGCCACAGCCGATTCCTTACACAATCAACCTTGCAAACCAAGGAGAATGTAGTACTTCCCAATACAATGCAATAGGGACGAGGGATCACAACCAAAAAGTACCAACTCTAAGCGAGGAAGAAAGAGATGGCATGGAAGACAGAATTCATTGTCTTTTGTTACCTGCTGAGATATATAGTTAG

Protein Analysis

208

Amino Acids

22.65

Weight (kDa)

5.07

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26741
prunus_persica Prupe.1G316600_v2.0.a1
rosa_laevigata RLG00000023290
rosa_samantha Rh3CG288000 Rh3DG283800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 359, 405
AclWI GGATC 1 cut(s) 534
AcsI RAATTY 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 249, 496, 543
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 2 cut(s) 116, 421
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 35
AloI GAACNNNNNNTCC 2 cut(s) 247, 279
AluBI AGCT 3 cut(s) 68, 104, 287
AluI AGCT 3 cut(s) 68, 104, 287
AlwI GGATC 1 cut(s) 534
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 354
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BbsI GAAGAC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 373
BccI CCATC 2 cut(s) 270, 563
BciT130I CCWGG 1 cut(s) 37
BclI TGATCA 1 cut(s) 91
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 1 cut(s) 387
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 283
Bpu1102I GCTNAGC 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 22, 262
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 3 cut(s) 119, 297, 600
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 373
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 61, 91, 526
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 3 cut(s) 14, 359, 405
BspCNI CTCAG 3 cut(s) 120, 296, 601
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 1 cut(s) 534
BspQI GCTCTTC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 3 cut(s) 61, 91, 526
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 173, 436
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 4 cut(s) 128, 283, 551, 609
BstF5I GGATG 2 cut(s) 22, 262
BstKTI GATC 3 cut(s) 64, 94, 529
BstMBI GATC 3 cut(s) 61, 91, 526
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 585
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 22, 262
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 156
CseI GACGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 248, 495, 542
CviAII CATG 5 cut(s) 133, 199, 321, 333, 574
CviJI RGCY 9 cut(s) 68, 104, 154, 158, 261, 287, 400, 445, 451
CviKI_1 RGCY 9 cut(s) 68, 104, 154, 158, 261, 287, 400, 445, 451
CviQI GTAC 3 cut(s) 248, 495, 542
DdeI CTNAG 4 cut(s) 128, 283, 551, 609
DpnI GATC 3 cut(s) 63, 93, 528
DpnII GATC 3 cut(s) 61, 91, 526
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 481
Eco32I GATATC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 5 cut(s) 136, 202, 324, 336, 577
FaqI GGGAC 1 cut(s) 532
FatI CATG 5 cut(s) 132, 198, 320, 332, 573
FauNDI CATATG 1 cut(s) 96
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 29, 249
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 162
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 136, 202, 324, 336, 577
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 4 cut(s) 20, 44, 317, 454
Hpy188I TCNGA 3 cut(s) 25, 316, 372
Hpy188III TCNNGA 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 173, 436
HpyCH4IV ACGT 4 cut(s) 84, 118, 250, 416
HpyCH4V TGCA 3 cut(s) 389, 476, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 4 cut(s) 128, 283, 551, 609
HpySE526I ACGT 4 cut(s) 84, 118, 250, 416
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 136, 202, 324, 336, 577
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 61, 91, 526
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 11, 292
LpnPI CCDG 8 cut(s) 22, 33, 40, 49, 123, 140, 144, 618
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 110
MaeII ACGT 4 cut(s) 84, 118, 250, 416
MaeIII GTNAC 2 cut(s) 80, 600
MalI GATC 3 cut(s) 63, 93, 528
MbiI CCGCTC 1 cut(s) 14
MboI GATC 3 cut(s) 61, 91, 526
MboII GAAGA 3 cut(s) 98, 572, 590
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 341, 585
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 6 cut(s) 292, 348, 366, 372, 516, 550
MroXI GAANNNNTTC 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeI CATATG 1 cut(s) 96
NdeII GATC 3 cut(s) 61, 91, 526
NlaIII CATG 5 cut(s) 136, 202, 324, 336, 577
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 20, 44, 317, 454
PkrI GCNGC 1 cut(s) 388
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 165
RsaI GTAC 3 cut(s) 249, 496, 543
RsaNI GTAC 3 cut(s) 248, 495, 542
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 61, 91, 526
ScaI AGTACT 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 354
SetI ASST 9 cut(s) 70, 87, 106, 121, 253, 289, 419, 474, 607
Sse9I AATT 2 cut(s) 341, 585
SsiI CCGC 3 cut(s) 14, 359, 405
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 2 cut(s) 173, 436
TaiI ACGT 4 cut(s) 87, 121, 253, 419
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 341, 585
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 4 cut(s) 20, 44, 317, 454
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 33, 113, 321, 370, 578
TspGWI ACGGA 1 cut(s) 255
XapI RAATTY 1 cut(s) 585
XceI RCATGY 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.