Prupe.1G316600_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021067
Physical Location & Seq
Reverse (-)
30515672 .. 30516529
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G316600.1

Sequence Viewer

Length: 537 bp
ATGTCCATGGGTAGAGGAGCTCTGTACCAGGCTTCAAATTTGTCCATGGCTGGGATGCAAAGCACACAAACACCCCAATTCATGTCGTATGTGCCCATGGGAACGAGCAATGCGTATGGAATGGGAATGGGAATGGGAATGGTTAATATGTGCTACTCAACAACAGGCCTTCCAATCATGTCCGTTCCCTCAGCCCGCTTCAATCCATTACAGCCAGCAACTGCAGGGTTCCCTCTAATGTCTGCACCAGGAGTTCTTCCTGTTAATCCCCAACTGCAAATGCCGATGCCATTCGTTGCTTCGCAAGTAATGCCTACAGCCACTACCACATCCAGGTCCATAAATATGGGTCGGCCGCAATTTGCTACAGATTTCTCTCACACATTCAACTATGCAAACCAAGGAGAGTCTAGTTTCCAAAACTATACAAACAACGCAGCTTCTGCTGACAACCAGAGAGTGCCAATTATAAGCAAGAAATCTAAGGTGCTGGCTAGTCACGTGGTAACACCCCCTTCATCAGTCAGTGACAAGTAG

Protein Analysis

179

Amino Acids

18.95

Weight (kDa)

9.66

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26741
prunus_persica Prupe.1G316600_v2.0.a1
rosa_laevigata RLG00000023290
rosa_samantha Rh3CG288000 Rh3DG283800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AciI CCGC 2 cut(s) 196, 356
AcoI YGGCCR 1 cut(s) 353
AcsI RAATTY 1 cut(s) 37
AcvI CACGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 51, 333
AgsI TTSAA 3 cut(s) 36, 202, 388
AjnI CCWGG 3 cut(s) 27, 247, 332
AluBI AGCT 2 cut(s) 20, 440
AluI AGCT 2 cut(s) 20, 440
Alw21I GWGCWC 1 cut(s) 22
AlwNI CAGNNNCTG 2 cut(s) 221, 443
AoxI GGCC 2 cut(s) 166, 353
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 336
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 449
BciT130I CCWGG 3 cut(s) 29, 249, 334
BfaI CTAG 2 cut(s) 411, 495
BfmI CTRYAG 3 cut(s) 222, 315, 366
BisI GCNGC 2 cut(s) 356, 438
BlsI GCNGC 2 cut(s) 357, 439
Bme1390I CCNGG 3 cut(s) 29, 249, 334
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 29, 249, 334
BmsI GCATC 2 cut(s) 45, 276
Bpu10I CCTNAGC 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 502
BsaJI CCNNGG 4 cut(s) 6, 45, 96, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 333
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 3 cut(s) 29, 249, 334
BseDI CCNNGG 4 cut(s) 6, 45, 96, 400
BseGI GGATG 2 cut(s) 60, 329
BseLI CCNNNNNNNGG 2 cut(s) 51, 333
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 96
BseX3I CGGCCG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 449
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 168, 355
BsiEI CGRYCG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 51, 333
BsnI GGCC 2 cut(s) 168, 355
Bsp1286I GDGCHC 2 cut(s) 22, 96
Bsp19I CCATGG 3 cut(s) 6, 45, 96
BspACI CCGC 2 cut(s) 196, 356
BspANI GGCC 2 cut(s) 168, 355
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 6, 45, 96, 400
BssT1I CCWWGG 4 cut(s) 6, 45, 96, 400
Bst2UI CCWGG 3 cut(s) 29, 249, 334
BstAPI GCANNNNNTGC 2 cut(s) 310, 443
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 196, 216, 492
BstDEI CTNAG 2 cut(s) 190, 483
BstDSI CCRYGG 3 cut(s) 6, 45, 96
BstF5I GGATG 2 cut(s) 60, 329
BstMCI CGRYCG 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 310, 443
BstNI CCWGG 3 cut(s) 29, 249, 334
BstSCI CCNGG 3 cut(s) 27, 247, 332
BstSFI CTRYAG 3 cut(s) 222, 315, 366
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 346
BstZI CGGCCG 1 cut(s) 353
BsuRI GGCC 2 cut(s) 168, 355
BtgI CCRYGG 3 cut(s) 6, 45, 96
BtsCI GGATG 2 cut(s) 60, 329
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 196, 216, 492
CaiI CAGNNNCTG 2 cut(s) 221, 443
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 25
CviAII CATG 5 cut(s) 7, 46, 82, 97, 178
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 190, 483
EaeI YGGCCR 1 cut(s) 353
EagI CGGCCG 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 353
Eco130I CCWWGG 4 cut(s) 6, 45, 96, 400
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 27, 247, 332
EcoT14I CCWWGG 4 cut(s) 6, 45, 96, 400
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 4 cut(s) 6, 45, 96, 400
FaeI CATG 5 cut(s) 10, 49, 85, 100, 181
FatI CATG 5 cut(s) 6, 45, 81, 96, 177
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 356, 438
FokI GGATG 2 cut(s) 67, 316
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 356, 438
FspBI CTAG 2 cut(s) 411, 495
GluI GCNGC 2 cut(s) 356, 438
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 168, 355
Hin1II CATG 5 cut(s) 10, 49, 85, 100, 181
HinfI GANTC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 179, 525
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 58, 224, 245, 277, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 443
HpyF3I CTNAG 2 cut(s) 190, 483
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 5 cut(s) 10, 49, 85, 100, 181
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 2 cut(s) 45, 276
MaeI CTAG 2 cut(s) 411, 495
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 497, 505, 527
MboII GAAGA 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 22, 96
MluCI AATT 4 cut(s) 37, 77, 359, 465
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 3 cut(s) 8, 199, 243
MseI TTAA 2 cut(s) 144, 264
MslI CAYNNNNRTG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 29, 249, 334
MvaI CCWGG 3 cut(s) 29, 249, 334
MwoI GCNNNNNNNGC 2 cut(s) 310, 443
NcoI CCATGG 3 cut(s) 6, 45, 96
NlaIII CATG 5 cut(s) 10, 49, 85, 100, 181
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 497, 527
PceI AGGCCT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PkrI GCNGC 2 cut(s) 357, 439
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 502
PmlI CACGTG 1 cut(s) 502
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 502
PsiI TTATAA 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 3 cut(s) 27, 247, 332
PspCI CACGTG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 27, 247, 332
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 2 cut(s) 221, 443
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 144, 264
SatI GCNGC 2 cut(s) 356, 438
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 29, 249, 334
SduI GDGCHC 2 cut(s) 22, 96
SetI ASST 5 cut(s) 22, 338, 442, 489, 504
SfaNI GCATC 2 cut(s) 45, 276
SfcI CTRYAG 3 cut(s) 222, 315, 366
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 4 cut(s) 37, 77, 359, 465
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 2 cut(s) 196, 356
SspMI CTAG 2 cut(s) 411, 495
SstI GAGCTC 1 cut(s) 22
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 27, 247, 332
StyI CCWWGG 4 cut(s) 6, 45, 96, 400
TaiI ACGT 1 cut(s) 504
TasI AATT 4 cut(s) 37, 77, 359, 465
TauI GCSGC 1 cut(s) 358
Tru1I TTAA 2 cut(s) 144, 264
Tru9I TTAA 2 cut(s) 144, 264
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 2 cut(s) 497, 527
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 2 cut(s) 497, 527
TspDTI ATGAA 2 cut(s) 70, 507
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 37
XspI CTAG 2 cut(s) 411, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.