RLG00000023290

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
21223868 .. 21224233
366 bp
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UTR
Exon/CDS
Intron
RLM00000023290

Sequence Viewer

Length: 366 bp
ATGATGTACATGGCTATAGAAGCTATGTGGCATTCTGGGGTTCAAGGCAGTACCACTCAACAAATACCCCAATTCATGCCATATATGCCCATGGGGTCTGGAATGGGAATGGTTAATATTTGTGGTAATTTAGCAGGAGGAACAGGACAGCCTTTTCTATCTGTTCCATCAACTTCCGTTCCAAACTTGCCTGTATTTTTTGGACCAAGATTTGTTACATTCCCTCAATTCCCAACGCCACCTCCGTCTCCGCCACCATTCATGGCTGCACAAGCAATGCCTACACTCAGTACCACATCCACTACTACTATTGTTCAGCCACAGAAGATTCCTTACACACTCAACCCTACAAACCAAGGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.97

Weight (kDa)

6.52

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26741
prunus_persica Prupe.1G316600_v2.0.a1
rosa_laevigata RLG00000023290
rosa_samantha Rh3CG288000 Rh3DG283800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AfaI GTAC 3 cut(s) 8, 52, 292
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 90, 355
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 90, 355
BseGI GGATG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 31
Bsp1407I TGTACA 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 90, 355
BssT1I CCWWGG 2 cut(s) 90, 355
BstAUI TGTACA 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 20, 85, 272
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 7, 51, 291
CviAII CATG 4 cut(s) 10, 76, 91, 262
CviJI RGCY 5 cut(s) 14, 23, 151, 266, 319
CviKI_1 RGCY 5 cut(s) 14, 23, 151, 266, 319
CviQI GTAC 3 cut(s) 7, 51, 291
DdeI CTNAG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 90, 355
Eco47I GGWCC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 90, 355
ErhI CCWWGG 2 cut(s) 90, 355
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 4 cut(s) 13, 79, 94, 265
FaiI YATR 9 cut(s) 11, 17, 26, 77, 82, 84, 86, 92, 263
FatI CATG 4 cut(s) 9, 75, 90, 261
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 4 cut(s) 13, 79, 94, 265
HinfI GANTC 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 85, 272
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 4 cut(s) 13, 79, 94, 265
LpnPI CCDG 5 cut(s) 21, 84, 120, 129, 204
Lsp1109I GCAGC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 337
MluCI AATT 3 cut(s) 71, 127, 227
MnlI CCTC 3 cut(s) 131, 234, 252
MseI TTAA 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 20, 85, 272
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 4 cut(s) 13, 79, 94, 265
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 3 cut(s) 8, 52, 292
RsaNI GTAC 3 cut(s) 7, 51, 291
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 203
SetI ASST 2 cut(s) 25, 244
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 203
Sse9I AATT 3 cut(s) 71, 127, 227
SsiI CCGC 1 cut(s) 251
SspI AATATT 1 cut(s) 118
StyI CCWWGG 2 cut(s) 90, 355
TasI AATT 3 cut(s) 71, 127, 227
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 64, 250
TspGWI ACGGA 2 cut(s) 166, 234
VpaK11BI GGWCC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.