FvH4_4g27740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017655
Physical Location & Seq
Forward (+)
28592809 .. 28593656
848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27740.t1

Sequence Viewer

Length: 432 bp
ATGGAATTCGCTTTGAGTCCTCAGTTCAACTTCGACATGGGCATGAACATGAACCCCTGTCTTGAATATCTTGAGGATGATGATGATGAATTCTATGCTGAGATGAGGAGGCAGATTATGATTTTGACTGGGGATCAATATGATGATTTTCCGGAGACCAAAATCGTTAGGCCAACTTATAGTAGTGTCACTAAACCAAAAACCTCAAGTTCTATATCATCACAAGGCTTTAAGAGCTTGTGGCAAAATGAATATAGCACTACTGATTCAGTAGCAGCACCAGTTCAGCCTGCAAAGTCCTCGGGAATTAGCAAAGGGACTGGAGTTTTCATCCCTAAAACTACTGTAAAATCCAGAAAAAATAACAAGCCAAAATCAGGAGGAAAGGTGAATGACAAAAAACTGTACAAGCCAGTGGAGAACAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

8.56

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27740
prunus_persica Prupe.1G307400_v2.0.a1 Prupe.1G307400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435601
rosa_laevigata RLG00000006578
rosa_multiflora Rmu_sc0000051.1_g000001
rosa_roxburghii Rroxscaffold_5G00376830
rosa_rugosa Rorug04G0287000
rosa_samantha Rh4BG350600 Rh4CG365300 Rh4DG345100
rosa_wichuraiana Rw4G029870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 151
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 2 cut(s) 5, 89
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 2 cut(s) 28, 65
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 5, 89
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 301
BbvI GCAGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BcoDI GTCTC 1 cut(s) 149
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 92, 190
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 4 cut(s) 133, 281, 325, 413
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 82, 330
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 35, 90
BseNI ACTGG 4 cut(s) 133, 281, 325, 413
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 301
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 2 cut(s) 34, 91
BspEI TCCGGA 1 cut(s) 151
BspPI GGATC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 4 cut(s) 133, 281, 325, 413
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 346, 405
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 21, 99
BstF5I GGATG 2 cut(s) 82, 330
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 82, 330
BtsIMutI CAGTG 2 cut(s) 420, 427
Cac8I GCNNGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 37, 43, 49
CviJI RGCY 6 cut(s) 172, 228, 237, 289, 370, 412
CviKI_1 RGCY 6 cut(s) 172, 228, 237, 289, 370, 412
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 21, 99
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 301
EcoRI GAATTC 2 cut(s) 5, 89
FaeI CATG 3 cut(s) 40, 46, 52
FaiI YATR 9 cut(s) 38, 44, 50, 96, 119, 141, 180, 215, 255
FaqI GGGAC 1 cut(s) 331
FatI CATG 3 cut(s) 36, 42, 48
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 89, 317
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 152
Hin1II CATG 3 cut(s) 40, 46, 52
HinfI GANTC 2 cut(s) 16, 266
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 400
Hpy188III TCNNGA 6 cut(s) 62, 71, 152, 303, 354, 378
HpyCH4III ACNGT 2 cut(s) 346, 405
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 21, 99
Hsp92II CATG 3 cut(s) 40, 46, 52
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 9 cut(s) 70, 114, 165, 294, 303, 306, 363, 367, 426
Lsp1109I GCAGC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MluCI AATT 3 cut(s) 5, 89, 306
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 7 cut(s) 30, 67, 99, 102, 214, 310, 374
MroI TCCGGA 1 cut(s) 151
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 41, 47
MspI CCGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 40, 46, 52
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 41, 47
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 25
SetI ASST 3 cut(s) 206, 239, 390
SmiMI CAYNNNNRTG 2 cut(s) 41, 47
SmlI CTYRAG 2 cut(s) 71, 205
SmoI CTYRAG 2 cut(s) 71, 205
Sse9I AATT 3 cut(s) 5, 89, 306
TaaI ACNGT 2 cut(s) 346, 405
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 5, 89, 306
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 5 cut(s) 59, 65, 102, 264, 319
TspRI CASTG 1 cut(s) 420
XapI RAATTY 2 cut(s) 5, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.