Rh4BG350600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017655
Physical Location & Seq
Forward (+)
51191948 .. 51192862
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG350600.1

Sequence Viewer

Length: 492 bp
ATGGAGTTTGATTTGAGTCCTCAGTTCAACTTTGACATGGGCATGAACGCAAAACCCAGTCTTGAATTTCTTGAGGAGGATGATGATGAATTCTATGCTGAGATGAGGAGGCAGATTATGATTTTGACTGGGGATCAGAATGATGATTTTCCAGAGACCAAAATCGTTAAGCCATCTTATGCTAGTGTCACAAAGCCATGTAGCTTAAGCTCCACATCATCACAAGGCAGTATGAGCTTGTGGCAAAATGAGTACATTACTAATTCAGTAGCAGTACCAGTTCAGCTTGCAAATTCGTGGGGAAATAGCACTGGGACTGGAGTTTTCATCCCTCAAAGTACTGGAAGATCCAGAAGAAATTACAAGCCAACAAATAATGTGAAAATGACTGGTATACATGCATATGCCCAAGAAGACATTCCTCAAATTAATTTACATGTTGGAGAAGAACCACCAGATCAGCCTTTACTGAAGTCTACAAAAGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

4.78

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27740
prunus_persica Prupe.1G307400_v2.0.a1 Prupe.1G307400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435601
rosa_laevigata RLG00000006578
rosa_multiflora Rmu_sc0000051.1_g000001
rosa_roxburghii Rroxscaffold_5G00376830
rosa_rugosa Rorug04G0287000
rosa_samantha Rh4BG350600 Rh4CG365300 Rh4DG345100
rosa_wichuraiana Rw4G029870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 394, 476
AclWI GGATC 2 cut(s) 141, 342
AcsI RAATTY 3 cut(s) 65, 89, 292
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 3 cut(s) 254, 276, 340
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 2 cut(s) 28, 65
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 4 cut(s) 204, 210, 237, 286
AluI AGCT 4 cut(s) 204, 210, 237, 286
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 141, 342
ApoI RAATTY 3 cut(s) 65, 89, 292
AseI ATTAAT 1 cut(s) 429
Asp700I GAANNNNTTC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 420
BccI CCATC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 340
BmrI ACTGGG 3 cut(s) 51, 138, 321
BmuI ACTGGG 3 cut(s) 51, 138, 321
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 149
Bse1I ACTGG 7 cut(s) 57, 133, 278, 316, 322, 346, 394
BseGI GGATG 2 cut(s) 85, 327
BseMII CTCAG 2 cut(s) 35, 90
BseNI ACTGG 7 cut(s) 57, 133, 278, 316, 322, 346, 394
BseRI GAGGAG 2 cut(s) 89, 121
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 133, 347, 457
BspCNI CTCAG 2 cut(s) 34, 91
BspPI GGATC 2 cut(s) 141, 342
BspTI CTTAAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 7 cut(s) 57, 133, 278, 316, 322, 346, 394
BssMI GATC 3 cut(s) 133, 347, 457
BssNAI GTATAC 1 cut(s) 395
Bst1107I GTATAC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 21, 99
BstF5I GGATG 2 cut(s) 85, 327
BstKTI GATC 3 cut(s) 136, 350, 460
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 133, 347, 457
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 401, 440
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BstZ17I GTATAC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 85, 327
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 253, 275, 339
CviAII CATG 5 cut(s) 37, 43, 198, 398, 437
CviJI RGCY 9 cut(s) 172, 196, 204, 210, 237, 286, 367, 463, 485
CviKI_1 RGCY 9 cut(s) 172, 196, 204, 210, 237, 286, 367, 463, 485
CviQI GTAC 3 cut(s) 253, 275, 339
DdeI CTNAG 2 cut(s) 21, 99
DpnI GATC 3 cut(s) 135, 349, 459
DpnII GATC 3 cut(s) 133, 347, 457
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 403
FaeI CATG 5 cut(s) 40, 46, 201, 401, 440
FaqI GGGAC 1 cut(s) 328
FatI CATG 5 cut(s) 36, 42, 197, 397, 436
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 2 cut(s) 394, 476
FokI GGATG 2 cut(s) 92, 314
FspBI CTAG 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 339
Hin1II CATG 5 cut(s) 40, 46, 201, 401, 440
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 395, 477
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 4 cut(s) 62, 71, 152, 351
Hpy8I GTNNAC 2 cut(s) 395, 477
HpyCH4V TGCA 2 cut(s) 290, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 21, 99
Hsp92II CATG 5 cut(s) 40, 46, 201, 401, 440
Kzo9I GATC 3 cut(s) 133, 347, 457
LmnI GCTCC 1 cut(s) 215
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 135, 349, 459
MboI GATC 3 cut(s) 133, 347, 457
MboII GAAGA 4 cut(s) 357, 366, 425, 458
MflI RGATCY 1 cut(s) 347
MluCI AATT 7 cut(s) 65, 89, 262, 292, 358, 426, 430
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 7 cut(s) 30, 67, 70, 99, 102, 342, 432
Mph1103I ATGCAT 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 3 cut(s) 168, 206, 429
MslI CAYNNNNRTG 2 cut(s) 41, 402
MspCI CTTAAG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeI CATATG 1 cut(s) 403
NdeII GATC 3 cut(s) 133, 347, 457
NlaIII CATG 5 cut(s) 40, 46, 201, 401, 440
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 2 cut(s) 401, 440
PciI ACATGT 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 417
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 436
PshBI ATTAAT 1 cut(s) 429
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 3 cut(s) 254, 276, 340
RsaNI GTAC 3 cut(s) 253, 275, 339
RseI CAYNNNNRTG 2 cut(s) 41, 402
SaqAI TTAA 3 cut(s) 168, 206, 429
Sau3AI GATC 3 cut(s) 133, 347, 457
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 1 cut(s) 25
SetI ASST 4 cut(s) 206, 212, 239, 288
SmiMI CAYNNNNRTG 2 cut(s) 41, 402
SmlI CTYRAG 2 cut(s) 71, 205
SmoI CTYRAG 2 cut(s) 71, 205
Sse9I AATT 7 cut(s) 65, 89, 262, 292, 358, 426, 430
SspMI CTAG 1 cut(s) 183
TasI AATT 7 cut(s) 65, 89, 262, 292, 358, 426, 430
TatI WGTACW 2 cut(s) 252, 338
Tru1I TTAA 3 cut(s) 168, 206, 429
Tru9I TTAA 3 cut(s) 168, 206, 429
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 59, 102, 316
TspRI CASTG 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 205
VspI ATTAAT 1 cut(s) 429
XapI RAATTY 3 cut(s) 65, 89, 292
XceI RCATGY 2 cut(s) 401, 440
XmiI GTMKAC 2 cut(s) 394, 476
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 340
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.