FvH4_4g28230

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015606
Physical Location & Seq
Forward (+)
28916786 .. 28918832
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28230.t1

Sequence Viewer

Length: 966 bp
ATGGAACACTTCAGCAAGGACTTCAGCATAGGCGCATGCGAAGGCCAAAAGGTTGTGGATGGAGAGACCATGCCACTGGTGCTGCAGCCTCCAGAGCCAACCAGGAATGATGTAGAGTCGCTTGTGTCGACTATCAAGAAAAACAAGGACTGGTTTGAGCAGATGCTTATCAAGAACAGTGCAATCCTGCTTAGAGGTTTCAATGTACAGAATGCAGTGGAGTTCAATGATATTGTGGAAGCTCTCGGGTGGGATGATATTCGTTACGTTGGTCCTGCTCCTCGAACACATATCCACAAGCGTGTCTGGACTGCCAATGAAGGACCTCTGTCTGAGTTCATATACTATCACCATGAGATGGTGCTGATTAAGGAGTTCCCAAAACAAGTCATCCTATTCTGTGAGACACCACCACCAGAAGGAGGACAGACACCGTTTGTTCCAAGCTTCCGAGTGACCGAAAGGATGCTGGAGGAGTTCCCAGAAGCTGTAGAAGAAATGGAGGCAAATGGCTTGAAGTACACCTTCACAGCTCCTAGCAAGAACAGCACAGGTTCAATGAGGGGTAGGGGATGGGAGGATGCTTTTGTCTCATCAGATCGTGCCGTAGCTGAACAAAGGGCTAATGCTTTAGGCATGGATGTGGAGTGGCTAGAAGATGGTTCGATGAAGACGATATTGGGTCCAAGATCCTTGACAAGGGTGTTTGAAGGAAGGAAAGGAAGGAGAATGTGGTTCAACACGGTTGTGGGAATGCATGGAAAGGAGCACAGTTCTGCTTCGATGGCTGACGGATCGGAGATTCCAGACAATGTGGTGAATAGATGCCAAGAGATTATTGAAGAAGAAAGTATCCAGTTCAAGTGGGAGAAGGGTGATGTGCTCTTCTTTGATAATTATGCTTTGCTCCATGGAAGGAGGCCTTCTGCTGCTCCCAGAAGAGTATTGGTTGCTACCTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

322

Amino Acids

36.44

Weight (kDa)

5.43

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 37 - 317 3.5e-30 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28230
malus_domestica MD13G1048200.v1.1 MD13G1048300.v1.1
prunus_persica Prupe.1G303900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0436031
rosa_laevigata RLG00000006541
rosa_multiflora Rmu_sc0006301.1_g000010 Rmu_sc0011669.1_g000001 Rmu_sc0018865.1_g000002
rosa_roxburghii Rroxscaffold_5G00377170
rosa_rugosa Rorug04G0291300
rosa_samantha Rh4AG345600 Rh4BG354600 Rh4CG369100 Rh4DG348300
rosa_wichuraiana Rw4G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 128
AclWI GGATC 2 cut(s) 684, 802
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 2 cut(s) 207, 521
AfiI CCNNNNNNNGG 4 cut(s) 358, 419, 422, 699
AgsI TTSAA 8 cut(s) 202, 226, 517, 558, 710, 739, 842, 862
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 2 cut(s) 300, 746
AluBI AGCT 5 cut(s) 242, 447, 488, 533, 611
AluI AGCT 5 cut(s) 242, 447, 488, 533, 611
Alw21I GWGCWC 2 cut(s) 771, 885
Alw26I GTCTC 3 cut(s) 59, 398, 595
AlwI GGATC 2 cut(s) 684, 802
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 2 cut(s) 43, 920
ApeKI GCWGC 3 cut(s) 82, 85, 929
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 3 cut(s) 272, 323, 683
AsuHPI GGTGA 3 cut(s) 341, 829, 887
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 3 cut(s) 272, 323, 683
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 2 cut(s) 771, 885
BbvI GCAGC 3 cut(s) 69, 97, 916
BccI CCATC 5 cut(s) 53, 352, 567, 653, 778
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 863
BcoDI GTCTC 3 cut(s) 59, 398, 595
BfaI CTAG 2 cut(s) 537, 653
BfmI CTRYAG 2 cut(s) 83, 489
BfuI GTATCC 1 cut(s) 863
BisI GCNGC 3 cut(s) 83, 86, 930
BlsI GCNGC 3 cut(s) 84, 87, 931
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 3 cut(s) 272, 323, 683
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 272, 323, 683
BmiI GGNNCC 1 cut(s) 684
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 4 cut(s) 153, 456, 571, 815
BoxI GACNNNNGTC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 2 cut(s) 75, 491
BsaBI GATNNNNATC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 910
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 419, 422, 699
Bse1I ACTGG 3 cut(s) 81, 155, 856
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 910
BseGI GGATG 7 cut(s) 64, 259, 390, 471, 578, 586, 646
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 4 cut(s) 358, 419, 422, 699
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 81, 155, 856
BseRI GAGGAG 2 cut(s) 270, 488
BseXI GCAGC 3 cut(s) 69, 97, 916
BshFI GGCC 2 cut(s) 45, 922
BsiHKAI GWGCWC 2 cut(s) 771, 885
BsiHKCI CYCGRG 1 cut(s) 245
BslI CCNNNNNNNGG 4 cut(s) 358, 419, 422, 699
BsmAI GTCTC 3 cut(s) 59, 398, 595
BsmI GAATGC 2 cut(s) 217, 759
BsnI GGCC 2 cut(s) 45, 922
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 771, 885
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 598, 689, 794
Bsp19I CCATGG 1 cut(s) 910
BspANI GGCC 2 cut(s) 45, 922
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 684
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 684, 802
BspQI GCTCTTC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 3 cut(s) 81, 155, 856
BssECI CCNNGG 1 cut(s) 910
BssMI GATC 3 cut(s) 598, 689, 794
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 179, 435, 745, 773
Bst6I CTCTTC 2 cut(s) 890, 934
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 191, 333
BstDSI CCRYGG 1 cut(s) 910
BstENI CCTNNNNNAGG 1 cut(s) 697
BstF5I GGATG 7 cut(s) 64, 259, 390, 471, 578, 586, 646
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 3 cut(s) 601, 692, 797
BstMAI GTCTC 3 cut(s) 59, 398, 595
BstMBI GATC 3 cut(s) 598, 689, 794
BstMWI GCNNNNNNNGC 4 cut(s) 79, 94, 546, 785
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 39
BstPAI GACNNNNGTC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 2 cut(s) 83, 489
BstV1I GCAGC 3 cut(s) 69, 97, 916
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 1 cut(s) 689
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 689
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 2 cut(s) 45, 922
BtgI CCRYGG 1 cut(s) 910
BtsCI GGATG 7 cut(s) 64, 259, 390, 471, 578, 586, 646
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 74, 184, 222
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 272, 323, 683
Csp6I GTAC 2 cut(s) 206, 520
CviAII CATG 6 cut(s) 36, 70, 353, 637, 758, 911
CviQI GTAC 2 cut(s) 206, 520
DdeI CTNAG 2 cut(s) 191, 333
DpnI GATC 3 cut(s) 600, 691, 796
DpnII GATC 3 cut(s) 598, 689, 794
Eam1104I CTCTTC 2 cut(s) 890, 934
EarI CTCTTC 2 cut(s) 890, 934
Eco130I CCWWGG 1 cut(s) 910
Eco147I AGGCCT 1 cut(s) 922
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 3 cut(s) 272, 323, 683
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 6 cut(s) 39, 73, 356, 640, 761, 914
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 907, 939
FatI CATG 6 cut(s) 35, 69, 352, 636, 757, 910
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 83, 86, 930
FokI GGATG 7 cut(s) 71, 266, 377, 478, 585, 593, 653
Fsp4HI GCNGC 3 cut(s) 83, 86, 930
FspBI CTAG 2 cut(s) 537, 653
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 83, 86, 930
GsuI CTGGAG 2 cut(s) 75, 491
HaeIII GGCC 2 cut(s) 45, 922
HhaI GCGC 1 cut(s) 35
Hin1II CATG 6 cut(s) 39, 73, 356, 640, 761, 914
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 2 cut(s) 116, 802
HphI GGTGA 3 cut(s) 341, 829, 887
Hpy166II GTNNAC 2 cut(s) 129, 522
Hpy188I TCNGA 4 cut(s) 334, 452, 598, 799
Hpy188III TCNNGA 5 cut(s) 92, 136, 172, 307, 806
Hpy8I GTNNAC 2 cut(s) 129, 522
HpyCH4III ACNGT 4 cut(s) 179, 435, 745, 773
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 85, 182, 215, 757, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 94, 546, 785
HpyF3I CTNAG 2 cut(s) 191, 333
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 6 cut(s) 39, 73, 356, 640, 761, 914
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 598, 689, 794
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 5 cut(s) 283, 538, 766, 912, 937
Lsp1109I GCAGC 3 cut(s) 69, 97, 916
LweI GCATC 4 cut(s) 153, 456, 571, 815
MaeI CTAG 2 cut(s) 537, 653
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 263, 454
MalI GATC 3 cut(s) 600, 691, 796
MboI GATC 3 cut(s) 598, 689, 794
MboII GAAGA 7 cut(s) 506, 668, 682, 854, 857, 877, 951
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 2 cut(s) 771, 885
MluCI AATT 1 cut(s) 895
MlyI GAGTC 1 cut(s) 125
Mph1103I ATGCAT 1 cut(s) 759
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 3 cut(s) 300, 641, 746
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 2 cut(s) 217, 759
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 4 cut(s) 79, 94, 546, 785
NcoI CCATGG 1 cut(s) 910
NdeII GATC 3 cut(s) 598, 689, 794
NlaIII CATG 6 cut(s) 39, 73, 356, 640, 761, 914
NlaIV GGNNCC 1 cut(s) 684
NmuCI GTSAC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 1 cut(s) 39
OliI CACNNNNGTG 2 cut(s) 300, 746
PaeI GCATGC 1 cut(s) 39
PceI AGGCCT 1 cut(s) 922
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 671
PctI GAATGC 2 cut(s) 217, 759
PfeI GAWTC 1 cut(s) 802
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 3 cut(s) 84, 87, 931
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 323
PshAI GACNNNNGTC 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 684
PspPI GGNCC 3 cut(s) 272, 323, 683
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 2 cut(s) 207, 521
RsaNI GTAC 2 cut(s) 206, 520
RseI CAYNNNNRTG 3 cut(s) 300, 641, 746
SalI GTCGAC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 83, 86, 930
Sau3AI GATC 3 cut(s) 598, 689, 794
Sau96I GGNCC 3 cut(s) 272, 323, 683
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 771, 885
SfaNI GCATC 4 cut(s) 153, 456, 571, 815
SfcI CTRYAG 2 cut(s) 83, 489
SinI GGWCC 3 cut(s) 272, 323, 683
SmiMI CAYNNNNRTG 3 cut(s) 300, 641, 746
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 895
SseBI AGGCCT 1 cut(s) 922
SspMI CTAG 2 cut(s) 537, 653
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 4 cut(s) 179, 435, 745, 773
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 128, 283, 665, 782
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 895
TatI WGTACW 2 cut(s) 205, 519
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 81, 184, 222
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 82, 85, 929
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 328, 333, 683
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 3 cut(s) 81, 184, 222
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 3 cut(s) 272, 323, 683
XagI CCTNNNNNAGG 1 cut(s) 697
XceI RCATGY 1 cut(s) 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 2 cut(s) 537, 653
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.