Rmu_sc0011669.1_g000001

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011669.1
OG0015606
Physical Location & Seq
Reverse (-)
1683 .. 3469
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011669.1_g000001.1.cds

Sequence Viewer

Length: 960 bp
atggaacacttcagcaaggacttcagcataggcgcatgcgaaggccagaaggttctggatggagagaccttgccactggtgctgcaacctccagagccaaccaggaatgatgtggagtcgcttgtgttgactctcaagaagaacaaggactggtttgagcagatgcttatcaagaacagtgcaatcctgcttagaggtttcaatgtacagaatgcagtggagttcaatgacattgtggaagctttagggtgggatgatattcgttacgttgggcctgctcctcgaacgcatgtgcacaagcgtgtctggactgccaatgaaggacctctatctgagttcatatactatcaccatgagatggtgctggagtaccccaagcaagtcatcctattctgtgagacaccaccaccagaaggaggacaaacaccttttgttccaagcttccgagtgaccgaaaggatgctcgaggagttcccagaagctgtagaagaaatggaggcaaatggcttgaagtacaccttcacagctcctagcaagaacagcactggttcaatgagaggtaggggctgggaggatgcttttgcaacatcagatcgagccgaagctgagaagagggctaatgctttaggcatggatgtcgagtggctagcagatggctcgatgaagacgatattgggtccaagatcagtgacaaaggtgtttgaaggaagaaaaggaaggagaatgtggttcaacacggttgtgggaatgcatgggaaggagcatagttctgctttcatggccgacggaacggagattccggacaatgtggtgaatagatgtcaagagattattgaagaagaaagtatccaattcaagtgggagaagggtgatgtgctcttccttgataacttggctttgctccatggaaggaggccttctgctgctcccagaagagtcttggtagctacttgcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

319

Amino Acids

36.13

Weight (kDa)

5.43

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28230
malus_domestica MD13G1048200.v1.1 MD13G1048300.v1.1
prunus_persica Prupe.1G303900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0436031
rosa_laevigata RLG00000006541
rosa_multiflora Rmu_sc0006301.1_g000010 Rmu_sc0011669.1_g000001 Rmu_sc0018865.1_g000002
rosa_roxburghii Rroxscaffold_5G00377170
rosa_rugosa Rorug04G0291300
rosa_samantha Rh4AG345600 Rh4BG354600 Rh4CG369100 Rh4DG348300
rosa_wichuraiana Rw4G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccIII TCCGGA 1 cut(s) 799
AcoI YGGCCR 1 cut(s) 780
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 3 cut(s) 207, 371, 515
AfiI CCNNNNNNNGG 3 cut(s) 358, 413, 416
AgsI TTSAA 8 cut(s) 202, 226, 511, 552, 704, 733, 836, 856
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AleI CACNNNNGTG 2 cut(s) 300, 740
AloI GAACNNNNNNTCC 2 cut(s) 781, 813
AluBI AGCT 6 cut(s) 242, 441, 482, 527, 605, 947
AluI AGCT 6 cut(s) 242, 441, 482, 527, 605, 947
Alw21I GWGCWC 2 cut(s) 297, 879
Alw26I GTCTC 2 cut(s) 59, 392
Alw44I GTGCAC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 4 cut(s) 43, 272, 780, 914
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 82, 923
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 3 cut(s) 272, 323, 677
AsuHPI GGTGA 3 cut(s) 341, 823, 881
AsuNHI GCTAGC 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 2 cut(s) 323, 677
BaeGI GKGCMC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 297, 879
BbvI GCAGC 2 cut(s) 69, 910
BccI CCATC 3 cut(s) 53, 352, 647
BcgI CGANNNNNNTGC 4 cut(s) 619, 639, 653, 673
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 59, 392
BfaI CTAG 2 cut(s) 531, 647
BfmI CTRYAG 1 cut(s) 483
BfuI GTATCC 1 cut(s) 857
BisI GCNGC 2 cut(s) 83, 924
BlsI GCNGC 2 cut(s) 84, 925
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 2 cut(s) 323, 677
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 272, 323, 677
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 153, 450, 565
BmtI GCTAGC 1 cut(s) 650
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 2 cut(s) 75, 386
BpuEI CTTGAG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 904
BsaWI WCCGGW 1 cut(s) 799
Bsc4I CCNNNNNNNGG 3 cut(s) 358, 413, 416
Bse1I ACTGG 3 cut(s) 81, 155, 550
Bse8I GATNNNNATC 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 904
BseGI GGATG 6 cut(s) 64, 259, 384, 465, 580, 640
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 358, 413, 416
BseMII CTCAG 2 cut(s) 324, 597
BseNI ACTGG 3 cut(s) 81, 155, 550
BseRI GAGGAG 2 cut(s) 270, 482
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 69, 910
BseYI CCCAGC 1 cut(s) 567
BshFI GGCC 4 cut(s) 45, 274, 782, 916
BsiHKAI GWGCWC 2 cut(s) 297, 879
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 800
BslI CCNNNNNNNGG 3 cut(s) 358, 413, 416
BsmAI GTCTC 2 cut(s) 59, 392
BsmI GAATGC 2 cut(s) 217, 753
BsnI GGCC 4 cut(s) 45, 274, 782, 916
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 297, 879
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 2 cut(s) 592, 683
Bsp19I CCATGG 1 cut(s) 904
BspANI GGCC 4 cut(s) 45, 274, 782, 916
BspCNI CTCAG 2 cut(s) 325, 598
BspEI TCCGGA 1 cut(s) 799
BspLI GGNNCC 1 cut(s) 678
BspOI GCTAGC 1 cut(s) 650
BspQI GCTCTTC 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 3 cut(s) 81, 155, 550
BssECI CCNNGG 1 cut(s) 904
BssMI GATC 2 cut(s) 592, 683
BssT1I CCWWGG 1 cut(s) 904
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 179, 739
Bst6I CTCTTC 3 cut(s) 605, 884, 928
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 37, 276, 648
BstDEI CTNAG 3 cut(s) 191, 333, 606
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 6 cut(s) 64, 259, 384, 465, 580, 640
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 595, 686
BstMAI GTCTC 2 cut(s) 59, 392
BstMBI GATC 2 cut(s) 592, 683
BstMWI GCNNNNNNNGC 3 cut(s) 79, 540, 779
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 39, 293
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 69, 910
BstV2I GAAGAC 1 cut(s) 671
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 4 cut(s) 45, 274, 782, 916
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 6 cut(s) 64, 259, 384, 465, 580, 640
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 5 cut(s) 74, 184, 222, 543, 693
Cac8I GCNNGC 3 cut(s) 37, 276, 648
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 272, 323, 677
Csp6I GTAC 3 cut(s) 206, 370, 514
CspCI CAANNNNNGTGG 2 cut(s) 839, 874
CviAII CATG 7 cut(s) 36, 290, 353, 631, 752, 778, 905
CviQI GTAC 3 cut(s) 206, 370, 514
DdeI CTNAG 3 cut(s) 191, 333, 606
DpnI GATC 2 cut(s) 594, 685
DpnII GATC 2 cut(s) 592, 683
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 3 cut(s) 605, 884, 928
EarI CTCTTC 3 cut(s) 605, 884, 928
Eco130I CCWWGG 1 cut(s) 904
Eco147I AGGCCT 1 cut(s) 916
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 323, 677
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 904
EcoT22I ATGCAT 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 904
FaeI CATG 7 cut(s) 39, 293, 356, 634, 755, 781, 908
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 901, 933
FatI CATG 7 cut(s) 35, 289, 352, 630, 751, 777, 904
Fnu4HI GCNGC 2 cut(s) 83, 924
FokI GGATG 6 cut(s) 71, 266, 371, 472, 587, 647
Fsp4HI GCNGC 2 cut(s) 83, 924
FspBI CTAG 2 cut(s) 531, 647
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 83, 924
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 2 cut(s) 75, 386
HaeIII GGCC 4 cut(s) 45, 274, 782, 916
HapII CCGG 1 cut(s) 800
HhaI GCGC 1 cut(s) 35
Hin1II CATG 7 cut(s) 39, 293, 356, 634, 755, 781, 908
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 2 cut(s) 240, 439
HinfI GANTC 4 cut(s) 116, 130, 796, 936
HpaII CCGG 1 cut(s) 800
HphI GGTGA 3 cut(s) 341, 823, 881
Hpy166II GTNNAC 3 cut(s) 129, 295, 516
Hpy188I TCNGA 3 cut(s) 334, 446, 592
Hpy188III TCNNGA 7 cut(s) 56, 92, 136, 172, 307, 800, 824
Hpy8I GTNNAC 3 cut(s) 129, 295, 516
Hpy99I CGWCG 1 cut(s) 788
HpyCH4III ACNGT 2 cut(s) 179, 739
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 7 cut(s) 85, 182, 215, 295, 584, 751, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 540, 779
HpyF3I CTNAG 3 cut(s) 191, 333, 606
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 7 cut(s) 39, 293, 356, 634, 755, 781, 908
HspAI GCGC 1 cut(s) 33
Kpn2I TCCGGA 1 cut(s) 799
Kzo9I GATC 2 cut(s) 592, 683
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 5 cut(s) 283, 532, 760, 906, 931
Lsp1109I GCAGC 2 cut(s) 69, 910
LweI GCATC 3 cut(s) 153, 450, 565
MaeI CTAG 2 cut(s) 531, 647
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 263, 448, 688
MalI GATC 2 cut(s) 594, 685
MboI GATC 2 cut(s) 592, 683
MboII GAAGA 9 cut(s) 151, 500, 622, 676, 720, 848, 851, 871, 945
MhlI GDGCHC 2 cut(s) 297, 879
MluCI AATT 1 cut(s) 851
MlyI GAGTC 3 cut(s) 124, 125, 945
Mph1103I ATGCAT 1 cut(s) 753
MroI TCCGGA 1 cut(s) 799
MslI CAYNNNNRTG 2 cut(s) 300, 740
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 2 cut(s) 217, 753
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 79, 540, 779
NcoI CCATGG 1 cut(s) 904
NdeII GATC 2 cut(s) 592, 683
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 7 cut(s) 39, 293, 356, 634, 755, 781, 908
NlaIV GGNNCC 1 cut(s) 678
NmuCI GTSAC 2 cut(s) 448, 688
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 2 cut(s) 39, 293
OliI CACNNNNGTG 2 cut(s) 300, 740
PaeI GCATGC 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 464
PceI AGGCCT 1 cut(s) 916
PciSI GCTCTTC 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 665
PctI GAATGC 2 cut(s) 217, 753
PfeI GAWTC 1 cut(s) 796
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 2 cut(s) 84, 925
PleI GAGTC 3 cut(s) 124, 124, 944
PpsI GAGTC 3 cut(s) 124, 124, 944
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 3 cut(s) 272, 323, 677
PspPPI RGGWCCY 1 cut(s) 323
PspXI VCTCGAGB 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 3 cut(s) 207, 371, 515
RsaNI GTAC 3 cut(s) 206, 370, 514
RseI CAYNNNNRTG 2 cut(s) 300, 740
SapI GCTCTTC 1 cut(s) 884
SatI GCNGC 2 cut(s) 83, 924
Sau3AI GATC 2 cut(s) 592, 683
Sau96I GGNCC 3 cut(s) 272, 323, 677
SchI GAGTC 3 cut(s) 124, 125, 945
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 297, 879
SfaNI GCATC 3 cut(s) 153, 450, 565
SfcI CTRYAG 1 cut(s) 483
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 2 cut(s) 323, 677
SlaI CTCGAG 1 cut(s) 464
SmiMI CAYNNNNRTG 2 cut(s) 300, 740
SmlI CTYRAG 2 cut(s) 134, 464
SmoI CTYRAG 2 cut(s) 134, 464
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 851
SseBI AGGCCT 1 cut(s) 916
SspMI CTAG 2 cut(s) 531, 647
StuI AGGCCT 1 cut(s) 916
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 904
TaaI ACNGT 2 cut(s) 179, 739
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 283, 465, 595, 639, 659
TaqII GACCGA 1 cut(s) 467
TasI AATT 1 cut(s) 851
TatI WGTACW 2 cut(s) 205, 513
TfiI GAWTC 1 cut(s) 796
TscAI CASTG 5 cut(s) 81, 184, 222, 550, 693
TseFI GTSAC 2 cut(s) 448, 688
TseI GCWGC 2 cut(s) 82, 923
Tsp45I GTSAC 2 cut(s) 448, 688
TspDTI ATGAA 4 cut(s) 328, 333, 677, 766
TspGWI ACGGA 2 cut(s) 801, 806
TspRI CASTG 5 cut(s) 81, 184, 222, 550, 693
Van91I CCANNNNNTGG 1 cut(s) 358
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 323, 677
XceI RCATGY 2 cut(s) 39, 293
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 937
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 2 cut(s) 531, 647
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.