Prupe.1G303900_v2.0.a1

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015606
Physical Location & Seq
Reverse (-)
29793718 .. 29795134
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G303900.1

Sequence Viewer

Length: 969 bp
ATGGAACACTTCACGAAGGACTTCAAAGTGGGAAAGTGTGAAGGGCAAAAGGTGGTGGATGGAGAAACCATGCCACTGGTGCTGCAGCCTCCAGAGCCCAACAGCAGCAATGATGTGGAGAGCCTTGTGTTGGCTCTGAAGAAGAACAAGGACTGGTTTGAGCAGATGCTGATCAAGAACAGCGCTGTGCTGCTTAGAGGTTTCAATGTGCAGAATGCAGAGGAGTTTAATGATATCATTGAAACATTCGGGTGGGATGATATTCGATACGTAGGGCCGGCACCAAGAACACATGTGCACAAGCGAGTATGGACTGCCAATGAAGGACCACTTTCGGAATTCATATACTATCACCATGAGATGGTTTTGATCAAGGAATATCCGAAAAAAGTGATCCTATTCTGTGAGACACCACCACCAGAAGGCGGAGAAACACCCTTTGTTCCGAGCTTCCGGGTAACGGAAAGGATGCTGAAGGAGTTCCCAGAAACCGTAGAAGAAATGGACGCAAATGGGTTGAAGTACACTTTCACAGCTCTCAGTAAGAACAGTACAGGTTCCATGAGGGGTAGGGGCTGGGAGGATACTTTTGGCACATCAGACCGTGCAGAAGCTGAGAAAAGGGCTAATGCTTTAGGCATGGACGTTGAGTGGCTACCAGATGGAGCAATCAAGACAATATTGGGGCCAAGGTCGCTGACGAAGGTGTTTGATGGAAGAAAAGAAAGGAGAATGTGGTTTAACACGGTGGTCGGCATGCATGGGAAGGAGCTCAGCTCTGCCCTCATGGCCGATGGAACCGAGATTCCGGCAAATGTGGTGAATAGATGTGAACAGATTATTGAAGAAGAAAGCATCCAATTTAAGTGGGAGAAGGGTGATGTTCTCTTCTTCGATAACTTGGCTTTGCTCCATGGAAGAAGGCCTTCTCTTCCTCCCAGGCGAGTCTTGGTAGCCACATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

323

Amino Acids

36.68

Weight (kDa)

5.66

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28230
malus_domestica MD13G1048200.v1.1 MD13G1048300.v1.1
prunus_persica Prupe.1G303900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0436031
rosa_laevigata RLG00000006541
rosa_multiflora Rmu_sc0006301.1_g000010 Rmu_sc0011669.1_g000001 Rmu_sc0018865.1_g000002
rosa_roxburghii Rroxscaffold_5G00377170
rosa_rugosa Rorug04G0291300
rosa_samantha Rh4AG345600 Rh4BG354600 Rh4CG369100 Rh4DG348300
rosa_wichuraiana Rw4G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 361
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 158, 494
AfaI GTAC 2 cut(s) 524, 553
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 5 cut(s) 130, 361, 422, 425, 460
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 5 cut(s) 25, 205, 242, 520, 845
AjnI CCWGG 1 cut(s) 938
AloI GAACNNNNNNTCC 2 cut(s) 790, 822
AluBI AGCT 5 cut(s) 450, 536, 614, 772, 777
AluI AGCT 5 cut(s) 450, 536, 614, 772, 777
Alw21I GWGCWC 2 cut(s) 300, 774
Alw26I GTCTC 1 cut(s) 401
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 2 cut(s) 169, 614
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 4 cut(s) 275, 686, 789, 923
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 4 cut(s) 82, 85, 105, 190
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 3 cut(s) 20, 479, 925
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 3 cut(s) 275, 326, 686
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 344, 832, 890
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 2 cut(s) 99, 774
Bbv12I GWGCWC 2 cut(s) 300, 774
BbvI GCAGC 4 cut(s) 69, 97, 117, 177
BccI CCATC 5 cut(s) 53, 355, 656, 707, 788
BciT130I CCWGG 1 cut(s) 940
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 2 cut(s) 171, 369
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 186
BfuI GTATCC 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 788
BisI GCNGC 4 cut(s) 83, 86, 106, 191
BlpI GCTNAGC 1 cut(s) 773
BlsI GCNGC 4 cut(s) 84, 87, 107, 192
Bme1390I CCNGG 2 cut(s) 455, 940
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 275, 326, 686
BmiI GGNNCC 4 cut(s) 282, 559, 687, 799
BmrFI CCNGG 2 cut(s) 455, 940
BmsI GCATC 3 cut(s) 156, 459, 864
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 455
BsaAI YACGTR 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 689, 913, 938
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 361, 422, 425, 460
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 81, 158
Bse3DI GCAATG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 1 cut(s) 940
BseDI CCNNGG 3 cut(s) 689, 913, 938
BseGI GGATG 4 cut(s) 64, 262, 474, 855
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 5 cut(s) 130, 361, 422, 425, 460
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 553, 606, 787
BseNI ACTGG 2 cut(s) 81, 158
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 4 cut(s) 69, 97, 117, 177
BseYI CCCAGC 1 cut(s) 576
BsgI GTGCAG 2 cut(s) 230, 627
BshFI GGCC 4 cut(s) 277, 688, 791, 925
BshNI GGYRCC 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 300, 774
BsiSI CCGG 3 cut(s) 278, 454, 809
BslI CCNNNNNNNGG 5 cut(s) 130, 361, 422, 425, 460
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 4 cut(s) 277, 688, 791, 925
Bsp1286I GDGCHC 3 cut(s) 99, 300, 774
Bsp143I GATC 3 cut(s) 171, 369, 393
Bsp1720I GCTNAGC 1 cut(s) 773
Bsp19I CCATGG 1 cut(s) 913
BspACI CCGC 1 cut(s) 426
BspANI GGCC 4 cut(s) 277, 688, 791, 925
BspCNI CTCAG 3 cut(s) 552, 607, 786
BspLI GGNNCC 4 cut(s) 282, 559, 687, 799
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 81, 158
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 689, 913, 938
BssMI GATC 3 cut(s) 171, 369, 393
BssT1I CCWWGG 2 cut(s) 689, 913
Bst2UI CCWGG 1 cut(s) 940
Bst4CI ACNGT 4 cut(s) 493, 551, 605, 748
Bst6I CTCTTC 2 cut(s) 893, 936
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 279, 758
BstDEI CTNAG 4 cut(s) 194, 539, 615, 773
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 4 cut(s) 64, 262, 474, 855
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 174, 372, 396
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 171, 369, 393
BstMWI GCNNNNNNNGC 4 cut(s) 79, 94, 694, 788
BstNI CCWGG 1 cut(s) 940
BstNSI RCATGY 3 cut(s) 296, 760, 963
BstSCI CCNGG 2 cut(s) 453, 938
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 300
BstSNI TACGTA 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 69, 97, 117, 177
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 4 cut(s) 277, 688, 791, 925
BtgI CCRYGG 1 cut(s) 913
BtsCI GGATG 4 cut(s) 64, 262, 474, 855
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 279, 758
CaiI CAGNNNCTG 2 cut(s) 169, 614
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 275, 326, 686
CseI GACGC 1 cut(s) 515
Csp6I GTAC 2 cut(s) 523, 552
CspCI CAANNNNNGTGG 2 cut(s) 848, 883
CviQI GTAC 2 cut(s) 523, 552
DdeI CTNAG 4 cut(s) 194, 539, 615, 773
DpnI GATC 3 cut(s) 173, 371, 395
DpnII GATC 3 cut(s) 171, 369, 393
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 893, 936
EarI CTCTTC 2 cut(s) 893, 936
EciI GGCGGA 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 772
Eco105I TACGTA 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 689, 913
Eco147I AGGCCT 1 cut(s) 925
Eco24I GRGCYC 2 cut(s) 99, 774
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 326
Eco47III AGCGCT 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 158, 494
EcoICRI GAGCTC 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 938
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 689, 913
EcoT22I ATGCAT 1 cut(s) 762
EcoT38I GRGCYC 2 cut(s) 99, 774
ErhI CCWWGG 2 cut(s) 689, 913
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 910, 942
FbaI TGATCA 2 cut(s) 171, 369
Fnu4HI GCNGC 4 cut(s) 83, 86, 106, 191
FokI GGATG 4 cut(s) 71, 269, 481, 842
FriOI GRGCYC 2 cut(s) 99, 774
Fsp4HI GCNGC 4 cut(s) 83, 86, 106, 191
GlaI GCGC 1 cut(s) 184
GluI GCNGC 4 cut(s) 83, 86, 106, 191
GsaI CCCAGC 1 cut(s) 580
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 4 cut(s) 277, 688, 791, 925
HapII CCGG 3 cut(s) 278, 454, 809
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 2 cut(s) 805, 945
HpaII CCGG 3 cut(s) 278, 454, 809
HphI GGTGA 3 cut(s) 344, 832, 890
Hpy166II GTNNAC 3 cut(s) 298, 525, 833
Hpy188I TCNGA 5 cut(s) 138, 337, 384, 447, 601
Hpy188III TCNNGA 4 cut(s) 13, 92, 175, 673
Hpy8I GTNNAC 3 cut(s) 298, 525, 833
HpyCH4III ACNGT 4 cut(s) 493, 551, 605, 748
HpyCH4IV ACGT 2 cut(s) 270, 645
HpyCH4V TGCA 7 cut(s) 85, 211, 218, 298, 608, 760, 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 94, 694, 788
HpyF3I CTNAG 4 cut(s) 194, 539, 615, 773
HpySE526I ACGT 2 cut(s) 270, 645
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Ksp22I TGATCA 2 cut(s) 171, 369
Kzo9I GATC 3 cut(s) 171, 369, 393
LmnI GCTCC 3 cut(s) 665, 769, 915
Lsp1109I GCAGC 4 cut(s) 69, 97, 117, 177
LweI GCATC 3 cut(s) 156, 459, 864
MaeII ACGT 2 cut(s) 270, 645
MaeIII GTNAC 1 cut(s) 457
MalI GATC 3 cut(s) 173, 371, 395
MboI GATC 3 cut(s) 171, 369, 393
MhlI GDGCHC 3 cut(s) 99, 300, 774
MluCI AATT 2 cut(s) 338, 860
MlyI GAGTC 1 cut(s) 954
MnlI CCTC 7 cut(s) 99, 191, 214, 558, 574, 794, 945
Mph1103I ATGCAT 1 cut(s) 762
MroNI GCCGGC 1 cut(s) 277
MroXI GAANNNNTTC 3 cut(s) 20, 479, 925
MseI TTAA 3 cut(s) 228, 741, 864
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 3 cut(s) 278, 454, 809
MspR9I CCNGG 2 cut(s) 455, 940
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 1 cut(s) 940
MwoI GCNNNNNNNGC 4 cut(s) 79, 94, 694, 788
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 913
NdeII GATC 3 cut(s) 171, 369, 393
NgoMIV GCCGGC 1 cut(s) 277
NlaIV GGNNCC 4 cut(s) 282, 559, 687, 799
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 3 cut(s) 296, 760, 963
PaeI GCATGC 1 cut(s) 760
PceI AGGCCT 1 cut(s) 925
PciI ACATGT 1 cut(s) 292
PctI GAATGC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 279
PdmI GAANNNNTTC 3 cut(s) 20, 479, 925
PfeI GAWTC 1 cut(s) 805
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 4 cut(s) 84, 87, 107, 192
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
Ppu21I YACGTR 1 cut(s) 271
PscI ACATGT 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 938
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 1 cut(s) 938
PspN4I GGNNCC 4 cut(s) 282, 559, 687, 799
PspPI GGNCC 3 cut(s) 275, 326, 686
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 2 cut(s) 169, 614
RsaI GTAC 2 cut(s) 524, 553
RsaNI GTAC 2 cut(s) 523, 552
RseI CAYNNNNRTG 1 cut(s) 250
SacI GAGCTC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 228, 741, 864
SatI GCNGC 4 cut(s) 83, 86, 106, 191
Sau3AI GATC 3 cut(s) 171, 369, 393
Sau96I GGNCC 3 cut(s) 275, 326, 686
SchI GAGTC 1 cut(s) 954
ScrFI CCNGG 2 cut(s) 455, 940
SduI GDGCHC 3 cut(s) 99, 300, 774
SfaNI GCATC 3 cut(s) 156, 459, 864
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 250
SnaBI TACGTA 1 cut(s) 271
SphI GCATGC 1 cut(s) 760
Sse9I AATT 2 cut(s) 338, 860
SseBI AGGCCT 1 cut(s) 925
SsiI CCGC 1 cut(s) 426
SspI AATATT 1 cut(s) 681
SstI GAGCTC 1 cut(s) 774
StuI AGGCCT 1 cut(s) 925
StyD4I CCNGG 2 cut(s) 453, 938
StyI CCWWGG 2 cut(s) 689, 913
TaaI ACNGT 4 cut(s) 493, 551, 605, 748
TaiI ACGT 2 cut(s) 273, 648
TaqI TCGA 2 cut(s) 265, 894
TasI AATT 2 cut(s) 338, 860
TatI WGTACW 2 cut(s) 522, 551
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 3 cut(s) 228, 741, 864
Tru9I TTAA 3 cut(s) 228, 741, 864
TscAI CASTG 1 cut(s) 81
TseI GCWGC 4 cut(s) 82, 85, 105, 190
TspDTI ATGAA 2 cut(s) 331, 336
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 338
XceI RCATGY 3 cut(s) 296, 760, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmnI GAANNNNTTC 3 cut(s) 20, 479, 925
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.