MD13G1048300.v1.1

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015606
Physical Location & Seq
Forward (+)
3385976 .. 3387734
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1048300.v1.1.491

Sequence Viewer

Length: 966 bp
ATGGAGCCCTTCACCAAAGACTTCAAAGTAGGAGAGTGCGAAGGCCAAAAGGTGGTGGATGGTGAGACCATGCCACTGGTGCTGCAGCCTCCAGCACCCGAAAACAACGATGTGGAGTCACTTATTTTGGCTCTTCAGAAGAACAAGGACTGGTTTGATCAGATGCTTCTCAAAAACAGCGCTATCCTTCTCCGAGGTTTCAATGTTCAGAACGCTGAGGAGTTCAACGACATCATAGAAACCTTCGGTTGGGATGATATTCGCTATGTAGGACCGGCGCCAAGAACTCATGTGCACAAGCGAGTTTGGACTGCAAATGAAGGACCTCTCTCAGAGTTCATATACTATCACCATGAGATGGTCTTGATTAAGGAATATCCCAAAAAGGTCATCCTATTCTGTGAGATACCTCCACCAGAAGGCGGACAGACCCCATTTGTTCCGAGCTTCCGAGTGACGGAGAGGATGCTGGAGGAGTTCCCGGAAGCTGTGGAAGAATTAGATGCAGGTGGCTTGAAATACACCTTCACAGCACCAAGTAAGAACAGCACAGGTTCTATGAGGGGCAGGGGTTGGGAGGATACTTTTGCCGCATCAGACCGTGCAGAAGCTGAAAAAAAGGCTAATGCTTTAGGCATGGACGTCGAGTGGCTATCAGATGGGGGAATCAAGACGATATTAGGACCGAGGTCGCTGACGAAGGTGTTTGAAGGAAGAAAAGGGAGGAGAATGTGGTTCAACACGATGGTAGGCATGCATGGGAAGGAGAACAGCTCGGCCCTGATGGCGGACGGGACCGAGATTCCGGCAGAGCTGGTGAACAGATGTGAGCAGATAATCGAAGAAGAAAGCATCCAGTTCAAGTGGGAGAAGGGTGATGTTCTCTTCCTTGATAACCTGGCTTTGCTTCATGGAAGGCGGCCTTCTCTTGCTCCCAGAAGAGTCTTGGTTGCCACATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

322

Amino Acids

36.32

Weight (kDa)

5.22

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 35 - 317 5.7e-32 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28230
malus_domestica MD13G1048200.v1.1 MD13G1048300.v1.1
prunus_persica Prupe.1G303900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0436031
rosa_laevigata RLG00000006541
rosa_multiflora Rmu_sc0006301.1_g000010 Rmu_sc0011669.1_g000001 Rmu_sc0018865.1_g000002
rosa_roxburghii Rroxscaffold_5G00377170
rosa_rugosa Rorug04G0291300
rosa_samantha Rh4AG345600 Rh4BG354600 Rh4CG369100 Rh4DG348300
rosa_wichuraiana Rw4G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
AatII GACGTC 1 cut(s) 645
Acc36I ACCTGC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 277
AccB7I CCANNNNNTGG 2 cut(s) 52, 358
AciI CCGC 4 cut(s) 423, 591, 788, 919
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 2 cut(s) 278, 642
AfeI AGCGCT 1 cut(s) 181
AfiI CCNNNNNNNGG 7 cut(s) 52, 249, 358, 419, 422, 457, 787
AgsI TTSAA 7 cut(s) 25, 202, 226, 517, 710, 739, 862
AjnI CCWGG 1 cut(s) 897
AluBI AGCT 5 cut(s) 447, 488, 611, 774, 814
AluI AGCT 5 cut(s) 447, 488, 611, 774, 814
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 611
Aor51HI AGCGCT 1 cut(s) 181
AoxI GGCC 3 cut(s) 43, 777, 920
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 82, 85
AspLEI GCGC 2 cut(s) 182, 280
AspS9I GGNCC 5 cut(s) 272, 323, 683, 778, 795
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 5 cut(s) 4, 74, 341, 829, 887
AvaII GGWCC 4 cut(s) 272, 323, 683, 795
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 69, 97
BccI CCATC 5 cut(s) 53, 352, 653, 739, 778
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 1 cut(s) 899
BciVI GTATCC 1 cut(s) 574
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 83
BfoI RGCGCY 2 cut(s) 183, 281
BfuAI ACCTGC 1 cut(s) 497
BfuI GTATCC 1 cut(s) 574
BglI GCCNNNNNGGC 1 cut(s) 785
BisI GCNGC 4 cut(s) 83, 86, 591, 920
BlsI GCNGC 4 cut(s) 84, 87, 592, 921
Bme1390I CCNGG 2 cut(s) 482, 899
Bme18I GGWCC 4 cut(s) 272, 323, 683, 795
BmgT120I GGNCC 5 cut(s) 272, 323, 683, 778, 795
BmiI GGNNCC 3 cut(s) 6, 279, 796
BmrFI CCNGG 2 cut(s) 482, 899
BmsI GCATC 5 cut(s) 153, 456, 493, 602, 861
BoxI GACNNNNGTC 1 cut(s) 688
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpmI CTGGAG 2 cut(s) 75, 491
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 2 cut(s) 278, 642
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 193, 686
Bsc4I CCNNNNNNNGG 7 cut(s) 52, 249, 358, 419, 422, 457, 787
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 81, 155, 856
BseBI CCWGG 1 cut(s) 899
BseDI CCNNGG 2 cut(s) 193, 686
BseGI GGATG 5 cut(s) 64, 259, 390, 471, 852
BseLI CCNNNNNNNGG 7 cut(s) 52, 249, 358, 419, 422, 457, 787
BseMII CTCAG 2 cut(s) 207, 345
BseNI ACTGG 3 cut(s) 81, 155, 856
BseRI GAGGAG 3 cut(s) 233, 488, 739
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 69, 97
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 3 cut(s) 45, 779, 922
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 275, 482, 806
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 7 cut(s) 52, 249, 358, 419, 422, 457, 787
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 3 cut(s) 45, 779, 922
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 9, 297
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 4 cut(s) 423, 591, 788, 919
BspANI GGCC 3 cut(s) 45, 779, 922
BspCNI CTCAG 2 cut(s) 208, 344
BspLI GGNNCC 3 cut(s) 6, 279, 796
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 3 cut(s) 81, 155, 856
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 193, 686
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 2 cut(s) 278, 642
Bst2UI CCWGG 1 cut(s) 899
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 3 cut(s) 138, 890, 934
BstACI GRCGYC 2 cut(s) 278, 642
BstC8I GCNNGC 1 cut(s) 755
BstDEI CTNAG 2 cut(s) 216, 331
BstF5I GGATG 5 cut(s) 64, 259, 390, 471, 852
BstH2I RGCGCY 2 cut(s) 183, 281
BstHHI GCGC 2 cut(s) 182, 280
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 79, 785
BstNI CCWGG 1 cut(s) 899
BstNSI RCATGY 2 cut(s) 757, 960
BstPAI GACNNNNGTC 1 cut(s) 688
BstSCI CCNGG 2 cut(s) 480, 897
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 69, 97
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 3 cut(s) 45, 779, 922
BtsCI GGATG 5 cut(s) 64, 259, 390, 471, 852
BtsIMutI CAGTG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 755
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 2 cut(s) 182, 280
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 5 cut(s) 272, 323, 683, 778, 795
CviAII CATG 8 cut(s) 70, 290, 353, 637, 754, 758, 911, 957
DdeI CTNAG 2 cut(s) 216, 331
DinI GGCGCC 1 cut(s) 279
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 138, 890, 934
EarI CTCTTC 3 cut(s) 138, 890, 934
EciI GGCGGA 2 cut(s) 438, 803
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 272, 323, 683, 795
Eco47III AGCGCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 897
EcoT22I ATGCAT 1 cut(s) 759
EcoT38I GRGCYC 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
FaeI CATG 8 cut(s) 73, 293, 356, 640, 757, 761, 914, 960
FalI AAGNNNNNCTT 2 cut(s) 907, 939
FaqI GGGAC 1 cut(s) 808
FatI CATG 8 cut(s) 69, 289, 352, 636, 753, 757, 910, 956
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 83, 86, 591, 920
FokI GGATG 5 cut(s) 71, 266, 377, 478, 839
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 83, 86, 591, 920
GlaI GCGC 2 cut(s) 181, 279
GluI GCNGC 4 cut(s) 83, 86, 591, 920
GsuI CTGGAG 2 cut(s) 75, 491
HaeII RGCGCY 2 cut(s) 183, 281
HaeIII GGCC 3 cut(s) 45, 779, 922
HapII CCGG 3 cut(s) 275, 482, 806
HhaI GCGC 2 cut(s) 182, 280
Hin1I GRCGYC 2 cut(s) 278, 642
Hin1II CATG 8 cut(s) 73, 293, 356, 640, 757, 761, 914, 960
Hin6I GCGC 2 cut(s) 180, 278
HinP1I GCGC 2 cut(s) 180, 278
HinfI GANTC 4 cut(s) 116, 666, 802, 942
HpaII CCGG 3 cut(s) 275, 482, 806
HphI GGTGA 5 cut(s) 4, 74, 341, 829, 887
Hpy166II GTNNAC 2 cut(s) 295, 820
Hpy188I TCNGA 9 cut(s) 138, 162, 194, 210, 334, 444, 452, 598, 658
Hpy188III TCNNGA 2 cut(s) 364, 670
Hpy8I GTNNAC 2 cut(s) 295, 820
Hpy99I CGWCG 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 7 cut(s) 85, 295, 314, 506, 605, 757, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 785
HpyF3I CTNAG 2 cut(s) 216, 331
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 2 cut(s) 278, 642
Hsp92II CATG 8 cut(s) 73, 293, 356, 640, 757, 761, 914, 960
HspAI GCGC 2 cut(s) 180, 278
KasI GGCGCC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 4, 937
Lsp1109I GCAGC 2 cut(s) 69, 97
LweI GCATC 5 cut(s) 153, 456, 493, 602, 861
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 2 cut(s) 117, 454
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 8 cut(s) 125, 151, 506, 726, 854, 857, 877, 951
MhlI GDGCHC 2 cut(s) 9, 297
MluCI AATT 1 cut(s) 497
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 2 cut(s) 125, 951
Mph1103I ATGCAT 1 cut(s) 759
MseI TTAA 1 cut(s) 369
MspI CCGG 3 cut(s) 275, 482, 806
MspR9I CCNGG 2 cut(s) 482, 899
MvaI CCWGG 1 cut(s) 899
MwoI GCNNNNNNNGC 2 cut(s) 79, 785
NarI GGCGCC 1 cut(s) 278
NciI CCSGG 1 cut(s) 482
NdeII GATC 1 cut(s) 157
NlaIII CATG 8 cut(s) 73, 293, 356, 640, 757, 761, 914, 960
NlaIV GGNNCC 3 cut(s) 6, 279, 796
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 2 cut(s) 117, 454
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 2 cut(s) 757, 960
PaeI GCATGC 1 cut(s) 757
PaqCI CACCTGC 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 666, 802
PflMI CCANNNNNTGG 2 cut(s) 52, 358
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 4 cut(s) 84, 87, 592, 921
PleI GAGTC 2 cut(s) 124, 950
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 2 cut(s) 124, 950
PpuMI RGGWCCY 1 cut(s) 323
PshAI GACNNNNGTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 897
PspGI CCWGG 1 cut(s) 897
PspN4I GGNNCC 3 cut(s) 6, 279, 796
PspPI GGNCC 5 cut(s) 272, 323, 683, 778, 795
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 83, 86, 591, 920
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 5 cut(s) 272, 323, 683, 778, 795
SchI GAGTC 2 cut(s) 125, 951
ScrFI CCNGG 2 cut(s) 482, 899
SduI GDGCHC 2 cut(s) 9, 297
SfaNI GCATC 5 cut(s) 153, 456, 493, 602, 861
SfcI CTRYAG 1 cut(s) 83
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 4 cut(s) 272, 323, 683, 795
SphI GCATGC 1 cut(s) 757
Sse9I AATT 1 cut(s) 497
SsiI CCGC 4 cut(s) 423, 591, 788, 919
SspDI GGCGCC 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 480, 897
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 645
TaqI TCGA 2 cut(s) 645, 840
TaqII GACCGA 2 cut(s) 700, 812
TasI AATT 1 cut(s) 497
TauI GCSGC 2 cut(s) 593, 922
TfiI GAWTC 2 cut(s) 666, 802
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 117, 454
TseI GCWGC 2 cut(s) 82, 85
Tsp45I GTSAC 2 cut(s) 117, 454
TspDTI ATGAA 3 cut(s) 328, 333, 899
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 2 cut(s) 52, 358
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 4 cut(s) 272, 323, 683, 795
XceI RCATGY 2 cut(s) 757, 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
ZraI GACGTC 1 cut(s) 643
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.