Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015607

Physical Location & Seq

Genomic Coordinates Reverse (-)

29872984 .. 29874925

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCCGTCTTCCTCAGAAACCTTGCTCCTCTCCACCATTCTCCTCTTGCTAACTCCTCCCATCCACACCGCCTCTTCCATCATCAACAAGACATGCCGTGACACATGCGGCACAATCCCGGTCAAGTTCCCATTCGGCACCGGATTCGGCTGCGGCCACCCGGACTTCACCAGGTACATCAAATGCACCAACCTCGACACTCTTCTATTCACCACCGGAACCGGCATCTACACCATTTCCTCCATAGACTACACCAGCAACACTATCATAGTCGCAGACCCTTTAATGTCAACATGCTCCTCCATGCAAAACTCCGGTAGCTTCAGCTTGGACAAGGCCAGTCCTTTTACCATAAGAGAGGAGAACATCTTTGTGCTTCTCGGCTGCTCCACCACCTCTCCTGTTTTCGATTCTAGTCAAGATTTATGTGACACTGGCTCGGGTTCTCGGGTTTGTAGAGGGTTGTACTCCTGCAAAGGGGTGTCTGGCATAGGGTTGCAACAGAATGCGCCGATATCTACTTGTTGTGTTTATGATGACGATTCTGGTTATGGTTTGGATCTTCCCAAGCTGCAATGCTCGTCTTACACATCGGTTTATGAGTTTGGAGACGAAGGGGATCCGATGAAATGGAAATTTGGGATTTCATTGCAGTATAATGATTCTTATTATACTAAGCCATGCAAGGATTGTGAGGCGAGTGGAGGGCTGTGTGGCTTTGGTGGTTTGGATCAGTCTTTTGCTTGTATTTGCCGGAGTGGGATGAACACCACCACAAATTGCTTTGGTCAAGGGTATGCTTGGAGTGGGTCATTGGAGCTCAAAGTTCAAATTAAAACCATTATTGGAGGAATTTTGCTCTCATGGGTCTTGCTGTTTGTAAAGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

298

Amino Acids

32.03

Weight (kDa)

5.19

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	32 - 93	5e-12	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	214 - 253	8.4e-06	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30030 FvH4_4g30030
malus_domestica	MD13G1062800.v1.1
prunus_persica	Prupe.1G286900_v2.0.a1
pyrus_communis	pycom13g05520
rosa_chinensis	RchiOBHm_Chr4g0438321
rosa_laevigata	RLG00000006370
rosa_multiflora	Rmu_sc0011129.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379410
rosa_rugosa	Rorug04G0309000
rosa_samantha	Rh4AG360100 Rh4BG371100 Rh4CG385100 Rh4DG366000
rosa_wichuraiana	Rw0G006470 Rw0G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	3 cut(s)	69, 108, 153
AclWI	GGATC	4 cut(s)	567, 614, 627, 738
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	635, 852
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	176, 467
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	321, 327, 571, 820
AluI	AGCT	4 cut(s)	321, 327, 571, 820
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	4 cut(s)	567, 614, 627, 738
Ama87I	CYCGRG	2 cut(s)	439, 447
AoxI	GGCC	2 cut(s)	154, 336
ApeKI	GCWGC	3 cut(s)	150, 384, 571
ApoI	RAATTY	2 cut(s)	635, 852
AspLEI	GCGC	1 cut(s)	511
AsuC2I	CCSGG	2 cut(s)	119, 161
AsuHPI	GGTGA	2 cut(s)	160, 202
AvaI	CYCGRG	2 cut(s)	439, 447
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	137, 371, 558
BccI	CCATC	2 cut(s)	68, 86
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	4 cut(s)	127, 161, 175, 209
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	119, 161
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	414
BisI	GCNGC	5 cut(s)	109, 151, 154, 385, 572
BlsI	GCNGC	5 cut(s)	110, 152, 155, 386, 573
Bme1390I	CCNGG	3 cut(s)	119, 161, 172
BmeT110I	CYCGRG	2 cut(s)	439, 447
BmiI	GGNNCC	3 cut(s)	139, 220, 621
BmrFI	CCNGG	3 cut(s)	119, 161, 172
BmsI	GCATC	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	119, 161
BsaWI	WCCGGW	3 cut(s)	140, 215, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	339, 439
Bse3DI	GCAATG	2 cut(s)	581, 647
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	60, 768
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	581, 647
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	339, 439
BseRI	GAGGAG	5 cut(s)	17, 32, 45, 289, 374
BseXI	GCAGC	3 cut(s)	137, 371, 558
BshFI	GGCC	2 cut(s)	156, 338
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	2 cut(s)	439, 447
BsiSI	CCGG	7 cut(s)	119, 141, 161, 216, 222, 315, 754
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	603
BsmBI	CGTCTC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	156, 338
BsoBI	CYCGRG	2 cut(s)	439, 447
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	559, 619, 730
BspACI	CCGC	3 cut(s)	69, 108, 153
BspANI	GGCC	2 cut(s)	156, 338
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	139, 220, 621
BspPI	GGATC	4 cut(s)	567, 614, 627, 738
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	581, 647
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	339, 439
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	3 cut(s)	559, 619, 730
Bst2UI	CCWGG	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	79, 207
BstDEI	CTNAG	2 cut(s)	13, 675
BstF5I	GGATG	2 cut(s)	60, 768
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	3 cut(s)	562, 622, 733
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	3 cut(s)	559, 619, 730
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	3 cut(s)	96, 108, 297
BstSCI	CCNGG	3 cut(s)	117, 159, 170
BstV1I	GCAGC	3 cut(s)	137, 371, 558
BstX2I	RGATCY	2 cut(s)	559, 619
BstYI	RGATCY	2 cut(s)	559, 619
BsuRI	GGCC	2 cut(s)	156, 338
BtsCI	GGATG	2 cut(s)	60, 768
BtsIMutI	CAGTG	1 cut(s)	432
CfoI	GCGC	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	175, 466
CviAII	CATG	6 cut(s)	93, 105, 294, 304, 681, 864
CviQI	GTAC	2 cut(s)	175, 466
DdeI	CTNAG	2 cut(s)	13, 675
DpnI	GATC	3 cut(s)	561, 621, 732
DpnII	GATC	3 cut(s)	559, 619, 730
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	79, 207
EarI	CTCTTC	2 cut(s)	79, 207
Ecl136II	GAGCTC	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	820
Eco57I	CTGAAG	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	439, 447
EcoICRI	GAGCTC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	6 cut(s)	96, 108, 297, 307, 684, 867
FatI	CATG	6 cut(s)	92, 104, 293, 303, 680, 863
Fnu4HI	GCNGC	5 cut(s)	109, 151, 154, 385, 572
FokI	GGATG	2 cut(s)	47, 775
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	5 cut(s)	109, 151, 154, 385, 572
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	5 cut(s)	109, 151, 154, 385, 572
HaeIII	GGCC	2 cut(s)	156, 338
HapII	CCGG	7 cut(s)	119, 141, 161, 216, 222, 315, 754
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	6 cut(s)	96, 108, 297, 307, 684, 867
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	4 cut(s)	144, 410, 542, 662
HpaII	CCGG	7 cut(s)	119, 141, 161, 216, 222, 315, 754
HphI	GGTGA	2 cut(s)	160, 202
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	2 cut(s)	16, 624
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	608
HpyCH4V	TGCA	7 cut(s)	186, 307, 474, 499, 574, 652, 684
HpyF3I	CTNAG	2 cut(s)	13, 675
Hsp92II	CATG	6 cut(s)	96, 108, 297, 307, 684, 867
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	559, 619, 730
LmnI	GCTCC	4 cut(s)	30, 302, 392, 817
Lsp1109I	GCAGC	3 cut(s)	137, 371, 558
LweI	GCATC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	170
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	98, 428
MalI	GATC	3 cut(s)	561, 621, 732
MboI	GATC	3 cut(s)	559, 619, 730
MboII	GAAGA	3 cut(s)	66, 194, 554
MflI	RGATCY	2 cut(s)	559, 619
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	4 cut(s)	635, 778, 831, 852
MseI	TTAA	2 cut(s)	284, 834
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	7 cut(s)	119, 141, 161, 216, 222, 315, 754
MspR9I	CCNGG	3 cut(s)	119, 161, 172
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	172
NciI	CCSGG	2 cut(s)	119, 161
NdeII	GATC	3 cut(s)	559, 619, 730
NlaIII	CATG	6 cut(s)	96, 108, 297, 307, 684, 867
NlaIV	GGNNCC	3 cut(s)	139, 220, 621
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	98, 428
NspI	RCATGY	3 cut(s)	96, 108, 297
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	144, 410, 542, 662
PkrI	GCNGC	5 cut(s)	110, 152, 155, 386, 573
Psp124BI	GAGCTC	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	139, 220, 621
PsuI	RGATCY	2 cut(s)	559, 619
RsaI	GTAC	2 cut(s)	176, 467
RsaNI	GTAC	2 cut(s)	175, 466
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	284, 834
SatI	GCNGC	5 cut(s)	109, 151, 154, 385, 572
Sau3AI	GATC	3 cut(s)	559, 619, 730
ScrFI	CCNGG	3 cut(s)	119, 161, 172
SduI	GDGCHC	1 cut(s)	822
SetI	ASST	8 cut(s)	23, 176, 195, 323, 329, 398, 573, 822
SexAI	ACCWGGT	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	635, 778, 831, 852
SsiI	CCGC	3 cut(s)	69, 108, 153
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	822
StyD4I	CCNGG	3 cut(s)	117, 159, 170
TaqI	TCGA	2 cut(s)	195, 408
TasI	AATT	4 cut(s)	635, 778, 831, 852
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	111, 156
TfiI	GAWTC	4 cut(s)	144, 410, 542, 662
Tru1I	TTAA	2 cut(s)	284, 834
Tru9I	TTAA	2 cut(s)	284, 834
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	98, 428
TseI	GCWGC	3 cut(s)	150, 384, 571
Tsp45I	GTSAC	2 cut(s)	98, 428
TspDTI	ATGAA	3 cut(s)	636, 641, 779
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	635, 852
XceI	RCATGY	3 cut(s)	96, 108, 297
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.