Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015607

Physical Location & Seq

Genomic Coordinates Reverse (-)

59796587 .. 59802187

Gene Structure 5601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCCGTCTGCCTCAGAAACCTTGCTCCTCTCCACTATTTTCCTCTTGCTAGCTCCTCCGATCCACACCGCCTCGTCCATAATCTACAAGACATGCCGTGACACATGCGGCACAATCCCTGTCAAGTTCCCATTCGGCACCGGATTCGGCTGCGGCCACCCGGACTTCACCAGGTACATCAAATGCACCAACCTAGACACTCTTCAGTTCACCACCGGAACCGGCATTTACACCATTTCCTCCATAGACTACACCAGCAACACTATCATAGTCGCAGACCCGCTAATGTCAACATGCTCCTCCATGCAAAACTCCGGTAGCTTCAGCTTGGACAAGGCCAGCCCTTTCACTATAAGAGATGAGAACATATTTGTTCTTCTCGGCTGCTCCACAACGTCTCCTGTTTTCGATCCAAGTGAAGATCTGTGTGACACCGGCTCGGCTTCTCGGGTTTGTAGAGGGTTATACTCCTGCAAAGGGGTGTCTGGAATAGGGTTGCAGCAGAATGCGCCGATATCTACTTGTTGTGTTTATGATGATTCTGTTGCTGGGTTCGGGTCGGGTTATGCGTTGGATCTTCCCAAGCTGCAATGCTCGTCTTATACATCGGTTTATGAGTTTGGAGACGAAGGGGATCCGACGAAATGGAAATTTGGGATTTCTTTGCAGTATAATGATTCTTATTATACTAGACCCTGCAAGGATTGTGAGGCGAGTGGAGGGTTGTGTGGCTTTGCTGCTACGGATCAATCTTTTGCTTGTATATGCCGGAGTGGGATGAACACCACCACAAATTGCTTTGGTCAAGGGTCTGCTTGGAGTGGGACACTGGAGCCCAGAGTTCAAATTAAAACCATTATTGGAGGTACGTATTCATACCCTGCCAACTTGGCAATGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

301

Amino Acids

32.16

Weight (kDa)

4.78

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	32 - 93	1.1e-11	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	219 - 258	1.3e-06	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30030 FvH4_4g30030
malus_domestica	MD13G1062800.v1.1
prunus_persica	Prupe.1G286900_v2.0.a1
pyrus_communis	pycom13g05520
rosa_chinensis	RchiOBHm_Chr4g0438321
rosa_laevigata	RLG00000006370
rosa_multiflora	Rmu_sc0011129.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379410
rosa_rugosa	Rorug04G0309000
rosa_samantha	Rh4AG360100 Rh4BG371100 Rh4CG385100 Rh4DG366000
rosa_wichuraiana	Rw0G006470 Rw0G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	4 cut(s)	69, 108, 153, 281
AclWI	GGATC	6 cut(s)	55, 404, 582, 629, 642, 753
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	2 cut(s)	188, 307
AfaI	GTAC	2 cut(s)	176, 868
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	845
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	53, 321, 327, 586
AluI	AGCT	4 cut(s)	53, 321, 327, 586
Alw26I	GTCTC	2 cut(s)	402, 618
AlwI	GGATC	6 cut(s)	55, 404, 582, 629, 642, 753
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	2 cut(s)	154, 336
ApeKI	GCWGC	5 cut(s)	150, 384, 499, 586, 737
ApoI	RAATTY	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	160, 202
AsuNHI	GCTAGC	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	837
BbvI	GCAGC	5 cut(s)	137, 371, 511, 573, 724
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	402, 618
BfaI	CTAG	3 cut(s)	50, 194, 690
BglI	GCCNNNNNGGC	1 cut(s)	890
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	7 cut(s)	109, 151, 154, 385, 500, 587, 738
BlsI	GCNGC	7 cut(s)	110, 152, 155, 386, 501, 588, 739
Bme1390I	CCNGG	2 cut(s)	161, 172
BmeT110I	CYCGRG	1 cut(s)	447
BmiI	GGNNCC	4 cut(s)	139, 220, 636, 834
BmrFI	CCNGG	2 cut(s)	161, 172
BmtI	GCTAGC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	870
BsaWI	WCCGGW	3 cut(s)	140, 215, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	2 cut(s)	221, 434
Bse1I	ACTGG	1 cut(s)	834
Bse3DI	GCAATG	2 cut(s)	596, 900
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	596, 900
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	3 cut(s)	17, 45, 289
BseXI	GCAGC	5 cut(s)	137, 371, 511, 573, 724
BseYI	CCCAGC	1 cut(s)	548
BshFI	GGCC	2 cut(s)	156, 338
BshNI	GGYRCC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	7 cut(s)	141, 161, 216, 222, 315, 435, 769
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	2 cut(s)	402, 618
BsmBI	CGTCTC	2 cut(s)	402, 618
BsmFI	GGGAC	1 cut(s)	838
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	156, 338
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp143I	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
BspACI	CCGC	4 cut(s)	69, 108, 153, 281
BspANI	GGCC	2 cut(s)	156, 338
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	4 cut(s)	139, 220, 636, 834
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	6 cut(s)	55, 404, 582, 629, 642, 753
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	596, 900
BsrFI	RCCGGY	2 cut(s)	221, 434
BsrI	ACTGG	1 cut(s)	834
BssAI	RCCGGY	2 cut(s)	221, 434
BssMI	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
Bst2UI	CCWGG	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	51, 340
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	6 cut(s)	63, 412, 424, 577, 637, 748
BstMAI	GTCTC	2 cut(s)	402, 618
BstMBI	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 890
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	3 cut(s)	96, 108, 297
BstSCI	CCNGG	2 cut(s)	159, 170
BstSNI	TACGTA	1 cut(s)	870
BstV1I	GCAGC	5 cut(s)	137, 371, 511, 573, 724
BstX2I	RGATCY	3 cut(s)	421, 574, 634
BstYI	RGATCY	3 cut(s)	421, 574, 634
BsuRI	GGCC	2 cut(s)	156, 338
BtsCI	GGATG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	827
Cac8I	GCNNGC	2 cut(s)	51, 340
CfoI	GCGC	1 cut(s)	511
Cfr10I	RCCGGY	2 cut(s)	221, 434
CsiI	ACCWGGT	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	175, 867
CviAII	CATG	4 cut(s)	93, 105, 294, 304
CviQI	GTAC	2 cut(s)	175, 867
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	6 cut(s)	62, 411, 423, 576, 636, 747
DpnII	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco105I	TACGTA	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	188, 307
Eco88I	CYCGRG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	837
Esp3I	CGTCTC	2 cut(s)	402, 618
FaeI	CATG	4 cut(s)	96, 108, 297, 307
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	4 cut(s)	92, 104, 293, 303
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	7 cut(s)	109, 151, 154, 385, 500, 587, 738
FokI	GGATG	1 cut(s)	790
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	7 cut(s)	109, 151, 154, 385, 500, 587, 738
FspBI	CTAG	3 cut(s)	50, 194, 690
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	7 cut(s)	109, 151, 154, 385, 500, 587, 738
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	2 cut(s)	156, 338
HapII	CCGG	7 cut(s)	141, 161, 216, 222, 315, 435, 769
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	96, 108, 297, 307
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	144, 539, 677
HpaII	CCGG	7 cut(s)	141, 161, 216, 222, 315, 435, 769
HphI	GGTGA	2 cut(s)	160, 202
Hpy166II	GTNNAC	2 cut(s)	210, 291
Hpy188I	TCNGA	3 cut(s)	16, 60, 639
Hpy188III	TCNNGA	2 cut(s)	486, 903
Hpy8I	GTNNAC	2 cut(s)	210, 291
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	1 cut(s)	623
HpyCH4IV	ACGT	2 cut(s)	395, 869
HpyCH4V	TGCA	7 cut(s)	186, 307, 474, 499, 589, 667, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 890
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	2 cut(s)	395, 869
Hsp92II	CATG	4 cut(s)	96, 108, 297, 307
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
LmnI	GCTCC	5 cut(s)	30, 58, 302, 392, 832
Lsp1109I	GCAGC	5 cut(s)	137, 371, 511, 573, 724
MabI	ACCWGGT	1 cut(s)	170
MaeI	CTAG	3 cut(s)	50, 194, 690
MaeII	ACGT	2 cut(s)	395, 869
MaeIII	GTNAC	2 cut(s)	98, 428
MalI	GATC	6 cut(s)	62, 411, 423, 576, 636, 747
MboI	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
MboII	GAAGA	4 cut(s)	194, 368, 431, 569
MflI	RGATCY	3 cut(s)	421, 574, 634
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	3 cut(s)	650, 793, 846
MmeI	TCCRAC	2 cut(s)	552, 662
MseI	TTAA	1 cut(s)	849
MspI	CCGG	7 cut(s)	141, 161, 216, 222, 315, 435, 769
MspR9I	CCNGG	2 cut(s)	161, 172
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	508, 890
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	96, 108, 297, 307
NlaIV	GGNNCC	4 cut(s)	139, 220, 636, 834
NmeAIII	GCCGAG	2 cut(s)	360, 419
NmuCI	GTSAC	2 cut(s)	98, 428
NspI	RCATGY	3 cut(s)	96, 108, 297
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	144, 539, 677
PkrI	GCNGC	7 cut(s)	110, 152, 155, 386, 501, 588, 739
Ppu21I	YACGTR	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	4 cut(s)	139, 220, 636, 834
PsuI	RGATCY	3 cut(s)	421, 574, 634
RsaI	GTAC	2 cut(s)	176, 868
RsaNI	GTAC	2 cut(s)	175, 867
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	7 cut(s)	109, 151, 154, 385, 500, 587, 738
Sau3AI	GATC	6 cut(s)	60, 409, 421, 574, 634, 745
ScrFI	CCNGG	2 cut(s)	161, 172
SduI	GDGCHC	1 cut(s)	837
SexAI	ACCWGGT	1 cut(s)	170
SnaBI	TACGTA	1 cut(s)	870
Sse9I	AATT	3 cut(s)	650, 793, 846
SsiI	CCGC	4 cut(s)	69, 108, 153, 281
SspMI	CTAG	3 cut(s)	50, 194, 690
StyD4I	CCNGG	2 cut(s)	159, 170
TaiI	ACGT	2 cut(s)	398, 872
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	650, 793, 846
TauI	GCSGC	2 cut(s)	111, 156
TfiI	GAWTC	3 cut(s)	144, 539, 677
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	2 cut(s)	98, 428
TseI	GCWGC	5 cut(s)	150, 384, 499, 586, 737
Tsp45I	GTSAC	2 cut(s)	98, 428
TspDTI	ATGAA	2 cut(s)	794, 864
TspGWI	ACGGA	1 cut(s)	758
TspRI	CASTG	1 cut(s)	834
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	3 cut(s)	96, 108, 297
XspI	CTAG	3 cut(s)	50, 194, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.