Purple acid phosphatase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13900 AT2G03450 |
| fragaria_vesca | FvH4_4g30400 FvH4_4g30400 |
| malus_domestica | MD13G1064900.v1.1 |
| prunus_persica | Prupe.1G283200_v2.0.a1 Prupe.1G283200_v2.0.a1 |
| pyrus_communis | pycom13g05730 |
| rosa_chinensis | RchiOBHm_Chr4g0438691 |
| rosa_laevigata | RLG00000006337 |
| rosa_multiflora | Rmu_co8427227.1_g000001 Rmu_sc0000738.1_g000044 Rmu_sc0012315.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379730 |
| rosa_rugosa | Rorug04G0312700 |
| rosa_samantha | Rh4AG363200 Rh4BG374600 Rh4CG388800 Rh4DG369100 |
| rosa_wichuraiana | Rw0G007170 Rw0G016710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 44, 1277 |
| AarI | CACCTGC | 1 cut(s) | 1751 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 106 |
| Acc36I | ACCTGC | 1 cut(s) | 1751 |
| AccB1I | GGYRCC | 1 cut(s) | 1108 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 861 |
| AccBSI | CCGCTC | 1 cut(s) | 1574 |
| AccI | GTMKAC | 2 cut(s) | 150, 1643 |
| AccII | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| AccIII | TCCGGA | 1 cut(s) | 312 |
| AclWI | GGATC | 7 cut(s) | 291, 323, 392, 442, 966, 1584, 1802 |
| AcoI | YGGCCR | 5 cut(s) | 3, 564, 608, 849, 1037 |
| AcvI | CACGTG | 1 cut(s) | 572 |
| AcyI | GRCGYC | 2 cut(s) | 660, 809 |
| AfaI | GTAC | 6 cut(s) | 224, 584, 815, 1226, 1349, 1622 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 379, 380, 381, 861, 918, 919, 1179 |
| AflIII | ACRYGT | 3 cut(s) | 571, 597, 1453 |
| AgsI | TTSAA | 4 cut(s) | 425, 881, 970, 1129 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 157, 1207 |
| AhlI | ACTAGT | 1 cut(s) | 1163 |
| AjiI | CACGTC | 2 cut(s) | 405, 559 |
| AjnI | CCWGG | 2 cut(s) | 640, 1135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 293, 325 |
| AluBI | AGCT | 9 cut(s) | 22, 415, 589, 741, 779, 884, 930, 1672, 1802 |
| AluI | AGCT | 9 cut(s) | 22, 415, 589, 741, 779, 884, 930, 1672, 1802 |
| Alw21I | GWGCWC | 1 cut(s) | 417 |
| Alw26I | GTCTC | 2 cut(s) | 630, 1232 |
| AlwI | GGATC | 7 cut(s) | 291, 323, 392, 442, 966, 1584, 1802 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1609 |
| Ama87I | CYCGRG | 2 cut(s) | 218, 379 |
| Aor13HI | TCCGGA | 1 cut(s) | 312 |
| AoxI | GGCC | 8 cut(s) | 3, 564, 608, 849, 1037, 1340, 1511, 1853 |
| ApeKI | GCWGC | 8 cut(s) | 19, 589, 592, 997, 1045, 1264, 1552, 1802 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 629, 661, 669, 701 |
| AspLEI | GCGC | 4 cut(s) | 486, 521, 536, 1171 |
| AspS9I | GGNCC | 6 cut(s) | 141, 327, 436, 442, 505, 1511 |
| AsuC2I | CCSGG | 6 cut(s) | 145, 259, 380, 381, 440, 503 |
| AsuHPI | GGTGA | 5 cut(s) | 803, 1571, 1643, 1732, 1766 |
| AsuII | TTCGAA | 1 cut(s) | 1661 |
| AvaI | CYCGRG | 2 cut(s) | 218, 379 |
| AvaII | GGWCC | 5 cut(s) | 141, 327, 436, 442, 505 |
| BaeGI | GKGCMC | 1 cut(s) | 803 |
| BalI | TGGCCA | 1 cut(s) | 851 |
| BanI | GGYRCC | 1 cut(s) | 1108 |
| BanII | GRGCYC | 2 cut(s) | 269, 417 |
| BbrPI | CACGTG | 1 cut(s) | 572 |
| BbsI | GAAGAC | 1 cut(s) | 1316 |
| Bbv12I | GWGCWC | 1 cut(s) | 417 |
| BbvI | GCAGC | 8 cut(s) | 31, 576, 604, 984, 1057, 1276, 1564, 1789 |
| BccI | CCATC | 9 cut(s) | 78, 650, 710, 863, 1082, 1390, 1528, 1694, 1814 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 979, 1013 |
| BciT130I | CCWGG | 2 cut(s) | 642, 1137 |
| BclI | TGATCA | 2 cut(s) | 132, 285 |
| BcnI | CCSGG | 6 cut(s) | 145, 259, 380, 381, 440, 503 |
| BcoDI | GTCTC | 2 cut(s) | 630, 1232 |
| BcuI | ACTAGT | 1 cut(s) | 1163 |
| BfaI | CTAG | 5 cut(s) | 1068, 1164, 1179, 1569, 1647 |
| BfmI | CTRYAG | 1 cut(s) | 590 |
| BfuAI | ACCTGC | 1 cut(s) | 1751 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1561 |
| Bme1390I | CCNGG | 8 cut(s) | 145, 259, 380, 381, 440, 503, 642, 1137 |
| Bme18I | GGWCC | 5 cut(s) | 141, 327, 436, 442, 505 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 157, 1207 |
| BmeT110I | CYCGRG | 2 cut(s) | 218, 379 |
| BmgBI | CACGTC | 2 cut(s) | 405, 559 |
| BmgT120I | GGNCC | 6 cut(s) | 141, 327, 436, 442, 505, 1511 |
| BmiI | GGNNCC | 6 cut(s) | 268, 437, 438, 1110, 1184, 1410 |
| BmrFI | CCNGG | 8 cut(s) | 145, 259, 380, 381, 440, 503, 642, 1137 |
| BmrI | ACTGGG | 1 cut(s) | 1167 |
| BmsI | GCATC | 2 cut(s) | 471, 1363 |
| BmuI | ACTGGG | 1 cut(s) | 1167 |
| BpiI | GAAGAC | 1 cut(s) | 1316 |
| BpmI | CTGGAG | 1 cut(s) | 223 |
| Bpu14I | TTCGAA | 1 cut(s) | 1661 |
| BpuMI | CCSGG | 6 cut(s) | 145, 259, 380, 381, 440, 503 |
| BsaAI | YACGTR | 1 cut(s) | 572 |
| BsaHI | GRCGYC | 2 cut(s) | 660, 809 |
| BsaI | GGTCTC | 1 cut(s) | 630 |
| BsaWI | WCCGGW | 1 cut(s) | 312 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1297, 1327, 1400, 1430 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 379, 380, 381, 861, 918, 919, 1179 |
| Bse118I | RCCGGY | 4 cut(s) | 579, 610, 898, 982 |
| Bse1I | ACTGG | 7 cut(s) | 176, 555, 611, 1040, 1162, 1553, 1879 |
| Bse3DI | GCAATG | 1 cut(s) | 1366 |
| BseAI | TCCGGA | 1 cut(s) | 312 |
| BseBI | CCWGG | 2 cut(s) | 642, 1137 |
| BseGI | GGATG | 3 cut(s) | 559, 1378, 1539 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 379, 380, 381, 861, 918, 919, 1179 |
| BseMI | GCAATG | 1 cut(s) | 1366 |
| BseMII | CTCAG | 2 cut(s) | 1140, 1601 |
| BseNI | ACTGG | 7 cut(s) | 176, 555, 611, 1040, 1162, 1553, 1879 |
| BseRI | GAGGAG | 3 cut(s) | 226, 386, 1399 |
| BseSI | GKGCMC | 1 cut(s) | 803 |
| BseX3I | CGGCCG | 1 cut(s) | 564 |
| BseXI | GCAGC | 8 cut(s) | 31, 576, 604, 984, 1057, 1276, 1564, 1789 |
| Bsh1236I | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| Bsh1285I | CGRYCG | 3 cut(s) | 469, 567, 1236 |
| BshFI | GGCC | 8 cut(s) | 5, 566, 610, 851, 1039, 1342, 1513, 1855 |
| BshNI | GGYRCC | 1 cut(s) | 1108 |
| BsiEI | CGRYCG | 3 cut(s) | 469, 567, 1236 |
| BsiHKAI | GWGCWC | 1 cut(s) | 417 |
| BsiHKCI | CYCGRG | 2 cut(s) | 218, 379 |
| BsiWI | CGTACG | 1 cut(s) | 813 |
| BslFI | GGGAC | 6 cut(s) | 422, 895, 1174, 1464, 1574, 1843 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 379, 380, 381, 861, 918, 919, 1179 |
| BsmAI | GTCTC | 2 cut(s) | 630, 1232 |
| BsmFI | GGGAC | 6 cut(s) | 422, 895, 1174, 1464, 1574, 1843 |
| BsnI | GGCC | 8 cut(s) | 5, 566, 610, 851, 1039, 1342, 1513, 1855 |
| Bso31I | GGTCTC | 1 cut(s) | 630 |
| BsoBI | CYCGRG | 2 cut(s) | 218, 379 |
| Bsp119I | TTCGAA | 1 cut(s) | 1661 |
| Bsp1286I | GDGCHC | 3 cut(s) | 269, 417, 803 |
| Bsp13I | TCCGGA | 1 cut(s) | 312 |
| Bsp1407I | TGTACA | 2 cut(s) | 1224, 1347 |
| BspANI | GGCC | 8 cut(s) | 5, 566, 610, 851, 1039, 1342, 1513, 1855 |
| BspCNI | CTCAG | 2 cut(s) | 1141, 1602 |
| BspEI | TCCGGA | 1 cut(s) | 312 |
| BspFNI | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| BspHI | TCATGA | 2 cut(s) | 663, 1024 |
| BspLI | GGNNCC | 6 cut(s) | 268, 437, 438, 1110, 1184, 1410 |
| BspMAI | CTGCAG | 1 cut(s) | 594 |
| BspMI | ACCTGC | 1 cut(s) | 1751 |
| BspPI | GGATC | 7 cut(s) | 291, 323, 392, 442, 966, 1584, 1802 |
| BspT104I | TTCGAA | 1 cut(s) | 1661 |
| BspT107I | GGYRCC | 1 cut(s) | 1108 |
| BspTNI | GGTCTC | 1 cut(s) | 630 |
| BsrBI | CCGCTC | 1 cut(s) | 1574 |
| BsrDI | GCAATG | 1 cut(s) | 1366 |
| BsrFI | RCCGGY | 4 cut(s) | 579, 610, 898, 982 |
| BsrGI | TGTACA | 2 cut(s) | 1224, 1347 |
| BsrI | ACTGG | 7 cut(s) | 176, 555, 611, 1040, 1162, 1553, 1879 |
| BssAI | RCCGGY | 4 cut(s) | 579, 610, 898, 982 |
| BssNAI | GTATAC | 1 cut(s) | 1644 |
| BssNI | GRCGYC | 2 cut(s) | 660, 809 |
| Bst1107I | GTATAC | 1 cut(s) | 1644 |
| Bst2UI | CCWGG | 2 cut(s) | 642, 1137 |
| Bst4CI | ACNGT | 1 cut(s) | 1588 |
| BstACI | GRCGYC | 2 cut(s) | 660, 809 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1766 |
| BstAUI | TGTACA | 2 cut(s) | 1224, 1347 |
| BstBAI | YACGTR | 1 cut(s) | 572 |
| BstBI | TTCGAA | 1 cut(s) | 1661 |
| BstC8I | GCNNGC | 5 cut(s) | 417, 612, 900, 1173, 1262 |
| BstDEI | CTNAG | 2 cut(s) | 1149, 1610 |
| BstDSI | CCRYGG | 2 cut(s) | 1049, 1624 |
| BstF5I | GGATG | 3 cut(s) | 559, 1378, 1539 |
| BstFNI | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| BstHHI | GCGC | 4 cut(s) | 486, 521, 536, 1171 |
| BstMAI | GTCTC | 2 cut(s) | 630, 1232 |
| BstMCI | CGRYCG | 3 cut(s) | 469, 567, 1236 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 516, 1045, 1054, 1408, 1561, 1766 |
| BstNI | CCWGG | 2 cut(s) | 642, 1137 |
| BstNSI | RCATGY | 3 cut(s) | 601, 1135, 1457 |
| BstSCI | CCNGG | 8 cut(s) | 143, 257, 378, 379, 438, 501, 640, 1135 |
| BstSFI | CTRYAG | 1 cut(s) | 590 |
| BstSLI | GKGCMC | 1 cut(s) | 803 |
| BstUI | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| BstV1I | GCAGC | 8 cut(s) | 31, 576, 604, 984, 1057, 1276, 1564, 1789 |
| BstV2I | GAAGAC | 1 cut(s) | 1316 |
| BstX2I | RGATCY | 2 cut(s) | 315, 447 |
| BstYI | RGATCY | 2 cut(s) | 315, 447 |
| BstZ17I | GTATAC | 1 cut(s) | 1644 |
| BstZI | CGGCCG | 1 cut(s) | 564 |
| BsuRI | GGCC | 8 cut(s) | 5, 566, 610, 851, 1039, 1342, 1513, 1855 |
| BtgI | CCRYGG | 2 cut(s) | 1049, 1624 |
| BtrI | CACGTC | 2 cut(s) | 405, 559 |
| BtsCI | GGATG | 3 cut(s) | 559, 1378, 1539 |
| BtsIMutI | CAGTG | 1 cut(s) | 1607 |
| BveI | ACCTGC | 1 cut(s) | 1751 |
| Cac8I | GCNNGC | 5 cut(s) | 417, 612, 900, 1173, 1262 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1609 |
| CciI | TCATGA | 2 cut(s) | 663, 1024 |
| CciNI | GCGGCCGC | 1 cut(s) | 564 |
| CfoI | GCGC | 4 cut(s) | 486, 521, 536, 1171 |
| Cfr10I | RCCGGY | 4 cut(s) | 579, 610, 898, 982 |
| Cfr13I | GGNCC | 6 cut(s) | 141, 327, 436, 442, 505, 1511 |
| Cfr42I | CCGCGG | 1 cut(s) | 1627 |
| Cfr9I | CCCGGG | 1 cut(s) | 379 |
| CpoI | CGGWCCG | 1 cut(s) | 505 |
| CseI | GACGC | 4 cut(s) | 475, 613, 649, 817 |
| Csp6I | GTAC | 6 cut(s) | 223, 583, 814, 1225, 1348, 1621 |
| CspI | CGGWCCG | 1 cut(s) | 505 |
| CviQI | GTAC | 6 cut(s) | 223, 583, 814, 1225, 1348, 1621 |
| DdeI | CTNAG | 2 cut(s) | 1149, 1610 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 106 |
| DriI | GACNNNNNGTC | 2 cut(s) | 157, 1207 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 106 |
| EaeI | YGGCCR | 5 cut(s) | 3, 564, 608, 849, 1037 |
| EagI | CGGCCG | 1 cut(s) | 564 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 157, 1207 |
| Ecl136II | GAGCTC | 1 cut(s) | 415 |
| EclXI | CGGCCG | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 2 cut(s) | 269, 417 |
| Eco31I | GGTCTC | 1 cut(s) | 630 |
| Eco47I | GGWCC | 5 cut(s) | 141, 327, 436, 442, 505 |
| Eco52I | CGGCCG | 1 cut(s) | 564 |
| Eco53kI | GAGCTC | 1 cut(s) | 415 |
| Eco72I | CACGTG | 1 cut(s) | 572 |
| Eco88I | CYCGRG | 2 cut(s) | 218, 379 |
| EcoICRI | GAGCTC | 1 cut(s) | 415 |
| EcoO109I | RGGNCCY | 2 cut(s) | 436, 1511 |
| EcoRII | CCWGG | 2 cut(s) | 640, 1135 |
| EcoT38I | GRGCYC | 2 cut(s) | 269, 417 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1656, 1688 |
| FaqI | GGGAC | 6 cut(s) | 422, 895, 1174, 1464, 1574, 1843 |
| FauI | CCCGC | 1 cut(s) | 1180 |
| FauNDI | CATATG | 1 cut(s) | 831 |
| FbaI | TGATCA | 2 cut(s) | 132, 285 |
| FblI | GTMKAC | 2 cut(s) | 150, 1643 |
| FokI | GGATG | 3 cut(s) | 566, 1385, 1546 |
| FriOI | GRGCYC | 2 cut(s) | 269, 417 |
| FspBI | CTAG | 5 cut(s) | 1068, 1164, 1179, 1569, 1647 |
| GlaI | GCGC | 4 cut(s) | 485, 520, 535, 1170 |
| GsuI | CTGGAG | 1 cut(s) | 223 |
| HaeIII | GGCC | 8 cut(s) | 5, 566, 610, 851, 1039, 1342, 1513, 1855 |
| HgaI | GACGC | 4 cut(s) | 475, 613, 649, 817 |
| HhaI | GCGC | 4 cut(s) | 486, 521, 536, 1171 |
| Hin1I | GRCGYC | 2 cut(s) | 660, 809 |
| Hin6I | GCGC | 4 cut(s) | 484, 519, 534, 1169 |
| HinP1I | GCGC | 4 cut(s) | 484, 519, 534, 1169 |
| HincII | GTYRAC | 2 cut(s) | 151, 1155 |
| HindII | GTYRAC | 2 cut(s) | 151, 1155 |
| HindIII | AAGCTT | 1 cut(s) | 1670 |
| HphI | GGTGA | 5 cut(s) | 803, 1571, 1643, 1732, 1766 |
| Hpy166II | GTNNAC | 7 cut(s) | 151, 652, 1155, 1225, 1350, 1423, 1644 |
| Hpy188III | TCNNGA | 8 cut(s) | 313, 347, 496, 653, 664, 750, 1025, 1737 |
| Hpy8I | GTNNAC | 7 cut(s) | 151, 652, 1155, 1225, 1350, 1423, 1644 |
| HpyAV | CCTTC | 2 cut(s) | 319, 1362 |
| HpyCH4III | ACNGT | 1 cut(s) | 1588 |
| HpyCH4IV | ACGT | 4 cut(s) | 404, 558, 571, 821 |
| HpyCH4V | TGCA | 6 cut(s) | 592, 835, 1014, 1045, 1216, 1711 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 516, 1045, 1054, 1408, 1561, 1766 |
| HpyF3I | CTNAG | 2 cut(s) | 1149, 1610 |
| HpySE526I | ACGT | 4 cut(s) | 404, 558, 571, 821 |
| Hsp92I | GRCGYC | 2 cut(s) | 660, 809 |
| HspAI | GCGC | 4 cut(s) | 484, 519, 534, 1169 |
| KflI | GGGWCCC | 1 cut(s) | 436 |
| Kpn2I | TCCGGA | 1 cut(s) | 312 |
| KroI | GCCGGC | 2 cut(s) | 610, 898 |
| KroNI | GCCGGC | 2 cut(s) | 612, 900 |
| Ksp22I | TGATCA | 2 cut(s) | 132, 285 |
| KspI | CCGCGG | 1 cut(s) | 1627 |
| LmnI | GCTCC | 5 cut(s) | 16, 272, 412, 1399, 1408 |
| Lsp1109I | GCAGC | 8 cut(s) | 31, 576, 604, 984, 1057, 1276, 1564, 1789 |
| LweI | GCATC | 2 cut(s) | 471, 1363 |
| MaeI | CTAG | 5 cut(s) | 1068, 1164, 1179, 1569, 1647 |
| MaeII | ACGT | 4 cut(s) | 404, 558, 571, 821 |
| MaeIII | GTNAC | 7 cut(s) | 198, 496, 791, 872, 1249, 1432, 1720 |
| MbiI | CCGCTC | 1 cut(s) | 1574 |
| MboII | GAAGA | 5 cut(s) | 22, 25, 310, 958, 1321 |
| MflI | RGATCY | 2 cut(s) | 315, 447 |
| MhlI | GDGCHC | 3 cut(s) | 269, 417, 803 |
| MlsI | TGGCCA | 1 cut(s) | 851 |
| MluCI | AATT | 2 cut(s) | 1243, 1489 |
| MluNI | TGGCCA | 1 cut(s) | 851 |
| MlyI | GAGTC | 6 cut(s) | 116, 146, 341, 1160, 1306, 1429 |
| MmeI | TCCRAC | 6 cut(s) | 147, 324, 704, 789, 1669, 1852 |
| Mox20I | TGGCCA | 1 cut(s) | 851 |
| MroI | TCCGGA | 1 cut(s) | 312 |
| MroNI | GCCGGC | 2 cut(s) | 610, 898 |
| MscI | TGGCCA | 1 cut(s) | 851 |
| MseI | TTAA | 2 cut(s) | 92, 1299 |
| MslI | CAYNNNNRTG | 2 cut(s) | 494, 1029 |
| Msp20I | TGGCCA | 1 cut(s) | 851 |
| MspA1I | CMGCKG | 2 cut(s) | 324, 1626 |
| MspR9I | CCNGG | 8 cut(s) | 145, 259, 380, 381, 440, 503, 642, 1137 |
| MvaI | CCWGG | 2 cut(s) | 642, 1137 |
| MvnI | CGCG | 9 cut(s) | 357, 486, 510, 519, 536, 818, 935, 1175, 1626 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 516, 1045, 1054, 1408, 1561, 1766 |
| NaeI | GCCGGC | 2 cut(s) | 612, 900 |
| NciI | CCSGG | 6 cut(s) | 145, 259, 380, 381, 440, 503 |
| NdeI | CATATG | 1 cut(s) | 831 |
| NgoMIV | GCCGGC | 2 cut(s) | 610, 898 |
| NlaIV | GGNNCC | 6 cut(s) | 268, 437, 438, 1110, 1184, 1410 |
| NmeAIII | GCCGAG | 1 cut(s) | 867 |
| NmuCI | GTSAC | 7 cut(s) | 198, 496, 791, 872, 1249, 1432, 1720 |
| NotI | GCGGCCGC | 1 cut(s) | 564 |
| NspI | RCATGY | 3 cut(s) | 601, 1135, 1457 |
| NspV | TTCGAA | 1 cut(s) | 1661 |
| PagI | TCATGA | 2 cut(s) | 663, 1024 |
| PaqCI | CACCTGC | 1 cut(s) | 1751 |
| PasI | CCCWGGG | 1 cut(s) | 641 |
| PciI | ACATGT | 2 cut(s) | 597, 1453 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 95, 107, 194, 483, 815, 998 |
| PdiI | GCCGGC | 2 cut(s) | 612, 900 |
| PfeI | GAWTC | 9 cut(s) | 180, 425, 616, 761, 865, 1021, 1715, 1726, 1875 |
| Pfl23II | CGTACG | 1 cut(s) | 813 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 861 |
| PfoI | TCCNGGA | 1 cut(s) | 438 |
| PleI | GAGTC | 6 cut(s) | 116, 146, 340, 1159, 1306, 1429 |
| PmaCI | CACGTG | 1 cut(s) | 572 |
| PmlI | CACGTG | 1 cut(s) | 572 |
| PpsI | GAGTC | 6 cut(s) | 116, 146, 340, 1159, 1306, 1429 |
| Ppu21I | YACGTR | 1 cut(s) | 572 |
| PpuMI | RGGWCCY | 1 cut(s) | 436 |
| PscI | ACATGT | 2 cut(s) | 597, 1453 |
| PsiI | TTATAA | 2 cut(s) | 44, 1277 |
| Psp124BI | GAGCTC | 1 cut(s) | 417 |
| Psp5II | RGGWCCY | 1 cut(s) | 436 |
| Psp6I | CCWGG | 2 cut(s) | 640, 1135 |
| PspCI | CACGTG | 1 cut(s) | 572 |
| PspGI | CCWGG | 2 cut(s) | 640, 1135 |
| PspLI | CGTACG | 1 cut(s) | 813 |
| PspN4I | GGNNCC | 6 cut(s) | 268, 437, 438, 1110, 1184, 1410 |
| PspPI | GGNCC | 6 cut(s) | 141, 327, 436, 442, 505, 1511 |
| PspPPI | RGGWCCY | 1 cut(s) | 436 |
| PstI | CTGCAG | 1 cut(s) | 594 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1609 |
| PsuI | RGATCY | 2 cut(s) | 315, 447 |
| RsaI | GTAC | 6 cut(s) | 224, 584, 815, 1226, 1349, 1622 |
| RsaNI | GTAC | 6 cut(s) | 223, 583, 814, 1225, 1348, 1621 |
| RseI | CAYNNNNRTG | 2 cut(s) | 494, 1029 |
| Rsr2I | CGGWCCG | 1 cut(s) | 505 |
| RsrII | CGGWCCG | 1 cut(s) | 505 |
| SacI | GAGCTC | 1 cut(s) | 417 |
| SacII | CCGCGG | 1 cut(s) | 1627 |
| SalI | GTCGAC | 1 cut(s) | 149 |
| SaqAI | TTAA | 2 cut(s) | 92, 1299 |
| Sau96I | GGNCC | 6 cut(s) | 141, 327, 436, 442, 505, 1511 |
| SchI | GAGTC | 6 cut(s) | 116, 146, 341, 1160, 1306, 1429 |
| ScrFI | CCNGG | 8 cut(s) | 145, 259, 380, 381, 440, 503, 642, 1137 |
| SduI | GDGCHC | 3 cut(s) | 269, 417, 803 |
| SfaNI | GCATC | 2 cut(s) | 471, 1363 |
| SfcI | CTRYAG | 1 cut(s) | 590 |
| Sfr303I | CCGCGG | 1 cut(s) | 1627 |
| SfuI | TTCGAA | 1 cut(s) | 1661 |
| SgrBI | CCGCGG | 1 cut(s) | 1627 |
| SinI | GGWCC | 5 cut(s) | 141, 327, 436, 442, 505 |
| SmaI | CCCGGG | 1 cut(s) | 381 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 494, 1029 |
| SpeI | ACTAGT | 1 cut(s) | 1163 |
| Sse9I | AATT | 2 cut(s) | 1243, 1489 |
| SspMI | CTAG | 5 cut(s) | 1068, 1164, 1179, 1569, 1647 |
| SstI | GAGCTC | 1 cut(s) | 417 |
| StyD4I | CCNGG | 8 cut(s) | 143, 257, 378, 379, 438, 501, 640, 1135 |
| TaaI | ACNGT | 1 cut(s) | 1588 |
| TaiI | ACGT | 4 cut(s) | 407, 561, 574, 824 |
| TaqI | TCGA | 9 cut(s) | 60, 110, 150, 161, 474, 749, 1073, 1232, 1661 |
| TaqII | GACCGA | 1 cut(s) | 1250 |
| TasI | AATT | 2 cut(s) | 1243, 1489 |
| TatI | WGTACW | 2 cut(s) | 1224, 1347 |
| TauI | GCSGC | 4 cut(s) | 19, 193, 566, 569 |
| TfiI | GAWTC | 9 cut(s) | 180, 425, 616, 761, 865, 1021, 1715, 1726, 1875 |
| Tru1I | TTAA | 2 cut(s) | 92, 1299 |
| Tru9I | TTAA | 2 cut(s) | 92, 1299 |
| TscAI | CASTG | 1 cut(s) | 1614 |
| TseFI | GTSAC | 7 cut(s) | 198, 496, 791, 872, 1249, 1432, 1720 |
| TseI | GCWGC | 8 cut(s) | 19, 589, 592, 997, 1045, 1264, 1552, 1802 |
| Tsp45I | GTSAC | 7 cut(s) | 198, 496, 791, 872, 1249, 1432, 1720 |
| TspDTI | ATGAA | 4 cut(s) | 772, 818, 1448, 1508 |
| TspGWI | ACGGA | 2 cut(s) | 561, 1470 |
| TspMI | CCCGGG | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 1614 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 861 |
| VpaK11BI | GGWCC | 5 cut(s) | 141, 327, 436, 442, 505 |
| XceI | RCATGY | 3 cut(s) | 601, 1135, 1457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1868 |
| XmaI | CCCGGG | 1 cut(s) | 379 |
| XmiI | GTMKAC | 2 cut(s) | 150, 1643 |
| XspI | CTAG | 5 cut(s) | 1068, 1164, 1179, 1569, 1647 |