Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427227.1

Orthogroup ID

OG0010093

Physical Location & Seq

Genomic Coordinates Reverse (-)

116 .. 1336

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgttcggtgacatgggcactacaacgccgtatgccacgtttcttcgcgtccaggacgaaagcgtggccaccgtggagtggattcttcgtgacattgaagctctcggtgacaagccggctttcgtgtcccacatcggagatataagctatgctagaggctattcatggctgtgggatcatttctttaatcagattgagccggttgcgacgaagctgccgtatcatgtttgcattgggaatcatgagtatgactggccgttgcagccgtggaagccggactggtctagttcgatttatgggaaagatggaggtggagaatgtggggtgccgtatagtgttaggttcaacatgcctgggaactcgtcggagccgactgggactagtgcaccggccactaggaacctatactattcgtttgacatggggtcggttcattttgtgtacatttcgaccgagaccaattttgtgacgggaagcaagcagcgtgagtttataaagcgtgatttggagagtgtgaaccggaccaagactcctttcgtggtggttagtggacacaggccgatgtacactacgagcaatgagggaagggatgcgcctatgaggaggcaaatgctggagcatttggagcctttgtttgtgaagaacaatgtcactctagcattatggggacatgttcatagatacgagaggttttgtccgatgagtaactatacttgtgggagtagagggcctgttcatgttgtgattgggatgggaggacaggactggcaaccgatatgggaacctagagcggatcacccaactgatcccattttcccacagccactgaggtctatgtaccgcggtggtgaatttggctacactagattggttgcttcaaaagagaagcttacactttcttatgttggaaaccatgatggacaggtgcatgattcggtggagattctggcttcgggagaggttctaggtggtgaagccggtggtgatggtgttgaagctcttggtaacggggtcaaagctgctgtgaatggtagtgatggtgctggtttttctggaaatgggagcaaatcggattccaaacttactttgtttgtaaagggagcaagcgttttagtccttggggctttcataggctatgttattggttttgtttcacacgccaggaaaagggccatctcagaaaatagttggattccggtgaagagggaggaggattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005768 GO:0005794 GO:0005802 GO:0006109 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019222 GO:0030943 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042578 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045040 GO:0045184 GO:0046907 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0080090 GO:0090150 GO:0090151 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

406

Amino Acids

44.92

Weight (kDa)

6.06

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13900 AT2G03450
fragaria_vesca	FvH4_4g30400 FvH4_4g30400
malus_domestica	MD13G1064900.v1.1
prunus_persica	Prupe.1G283200_v2.0.a1 Prupe.1G283200_v2.0.a1
pyrus_communis	pycom13g05730
rosa_chinensis	RchiOBHm_Chr4g0438691
rosa_laevigata	RLG00000006337
rosa_multiflora	Rmu_co8427227.1_g000001 Rmu_sc0000738.1_g000044 Rmu_sc0012315.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379730
rosa_rugosa	Rorug04G0312700
rosa_samantha	Rh4AG363200 Rh4BG374600 Rh4CG388800 Rh4DG369100
rosa_wichuraiana	Rw0G007170 Rw0G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	791
AccII	CGCG	2 cut(s)	48, 843
AciI	CCGC	3 cut(s)	791, 841, 843
AclWI	GGATC	3 cut(s)	183, 800, 801
AcoI	YGGCCR	3 cut(s)	66, 254, 390
AcsI	RAATTY	1 cut(s)	851
AfaI	GTAC	3 cut(s)	443, 566, 839
AfiI	CCNNNNNNNGG	2 cut(s)	78, 1167
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	98, 346, 879, 995
AhdI	GACNNNNNGTC	1 cut(s)	424
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	3 cut(s)	51, 352, 1160
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	6 cut(s)	101, 147, 214, 889, 998, 1019
AluI	AGCT	6 cut(s)	101, 147, 214, 889, 998, 1019
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	449
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	3 cut(s)	183, 800, 801
AlwNI	CAGNNNCTG	1 cut(s)	826
AoxI	GGCC	6 cut(s)	66, 254, 390, 557, 728, 1170
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	4 cut(s)	214, 262, 481, 1019
ApoI	RAATTY	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	3 cut(s)	522, 728, 1170
AsuHPI	GGTGA	7 cut(s)	20, 119, 788, 860, 983, 995, 1210
AvaII	GGWCC	1 cut(s)	522
BaeGI	GKGCMC	2 cut(s)	20, 388
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	201, 274, 493, 1006
BccI	CCATC	6 cut(s)	299, 745, 911, 980, 1031, 1181
BceAI	ACGGC	5 cut(s)	13, 202, 241, 250, 313
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	3 cut(s)	53, 354, 1162
BcoDI	GTCTC	1 cut(s)	449
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	8 cut(s)	153, 285, 381, 396, 656, 786, 864, 965
BisI	GCNGC	4 cut(s)	215, 263, 482, 1020
BlsI	GCNGC	4 cut(s)	216, 264, 483, 1021
Bme1390I	CCNGG	3 cut(s)	53, 354, 1162
Bme18I	GGWCC	1 cut(s)	522
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmgT120I	GGNCC	3 cut(s)	522, 728, 1170
BmiI	GGNNCC	5 cut(s)	327, 369, 401, 627, 783
BmrFI	CCNGG	3 cut(s)	53, 354, 1162
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	5 cut(s)	72, 266, 353, 841, 1117
BsaWI	WCCGGW	2 cut(s)	519, 1195
BsaXI	ACNNNNNCTCC	6 cut(s)	514, 544, 617, 647, 1092, 1122
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 1167
Bse118I	RCCGGY	4 cut(s)	115, 199, 388, 977
Bse1I	ACTGG	4 cut(s)	257, 284, 379, 770
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	3 cut(s)	53, 354, 1162
BseDI	CCNNGG	5 cut(s)	72, 266, 353, 841, 1117
BseGI	GGATG	2 cut(s)	595, 756
BseLI	CCNNNNNNNGG	2 cut(s)	78, 1167
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	2 cut(s)	818, 1191
BseNI	ACTGG	4 cut(s)	257, 284, 379, 770
BseRI	GAGGAG	1 cut(s)	616
BseSI	GKGCMC	2 cut(s)	20, 388
BseXI	GCAGC	4 cut(s)	201, 274, 493, 1006
Bsh1236I	CGCG	2 cut(s)	48, 843
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	6 cut(s)	68, 256, 392, 559, 730, 1172
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	7 cut(s)	116, 200, 275, 389, 520, 978, 1196
BslFI	GGGAC	3 cut(s)	112, 391, 681
BslI	CCNNNNNNNGG	2 cut(s)	78, 1167
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	3 cut(s)	112, 391, 681
BsnI	GGCC	6 cut(s)	68, 256, 392, 559, 730, 1172
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	20, 388
Bsp1407I	TGTACA	2 cut(s)	441, 564
Bsp143I	GATC	3 cut(s)	175, 793, 805
BspACI	CCGC	3 cut(s)	791, 841, 843
BspANI	GGCC	6 cut(s)	68, 256, 392, 559, 730, 1172
BspCNI	CTCAG	2 cut(s)	819, 1190
BspFNI	CGCG	2 cut(s)	48, 843
BspHI	TCATGA	2 cut(s)	241, 1217
BspLI	GGNNCC	5 cut(s)	327, 369, 401, 627, 783
BspPI	GGATC	3 cut(s)	183, 800, 801
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	4 cut(s)	115, 199, 388, 977
BsrGI	TGTACA	2 cut(s)	441, 564
BsrI	ACTGG	4 cut(s)	257, 284, 379, 770
BssAI	RCCGGY	4 cut(s)	115, 199, 388, 977
BssECI	CCNNGG	5 cut(s)	72, 266, 353, 841, 1117
BssMI	GATC	3 cut(s)	175, 793, 805
BssT1I	CCWWGG	1 cut(s)	1117
Bst2UI	CCWGG	3 cut(s)	53, 354, 1162
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	1196
BstAUI	TGTACA	2 cut(s)	441, 564
BstC8I	GCNNGC	3 cut(s)	117, 479, 1105
BstDEI	CTNAG	2 cut(s)	827, 1177
BstDSI	CCRYGG	3 cut(s)	72, 266, 841
BstF5I	GGATG	2 cut(s)	595, 756
BstFNI	CGCG	2 cut(s)	48, 843
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	3 cut(s)	178, 796, 808
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	175, 793, 805
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 271, 625
BstNI	CCWGG	3 cut(s)	53, 354, 1162
BstNSI	RCATGY	2 cut(s)	352, 674
BstSCI	CCNGG	3 cut(s)	51, 352, 1160
BstSLI	GKGCMC	2 cut(s)	20, 388
BstUI	CGCG	2 cut(s)	48, 843
BstV1I	GCAGC	4 cut(s)	201, 274, 493, 1006
BsuRI	GGCC	6 cut(s)	68, 256, 392, 559, 730, 1172
BtgI	CCRYGG	3 cut(s)	72, 266, 841
BtsCI	GGATG	2 cut(s)	595, 756
BtsIMutI	CAGTG	1 cut(s)	824
Cac8I	GCNNGC	3 cut(s)	117, 479, 1105
CaiI	CAGNNNCTG	1 cut(s)	826
CciI	TCATGA	2 cut(s)	241, 1217
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	4 cut(s)	115, 199, 388, 977
Cfr13I	GGNCC	3 cut(s)	522, 728, 1170
Cfr42I	CCGCGG	1 cut(s)	844
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	442, 565, 838
CviQI	GTAC	3 cut(s)	442, 565, 838
DdeI	CTNAG	2 cut(s)	827, 1177
DpnI	GATC	3 cut(s)	177, 795, 807
DpnII	GATC	3 cut(s)	175, 793, 805
DriI	GACNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	3 cut(s)	66, 254, 390
Eam1104I	CTCTTC	1 cut(s)	1196
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	1196
Eco130I	CCWWGG	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	51, 352, 1160
EcoT14I	CCWWGG	1 cut(s)	1117
ErhI	CCWWGG	1 cut(s)	1117
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	3 cut(s)	112, 391, 681
Fnu4HI	GCNGC	4 cut(s)	215, 263, 482, 1020
FokI	GGATG	2 cut(s)	602, 763
Fsp4HI	GCNGC	4 cut(s)	215, 263, 482, 1020
FspBI	CTAG	8 cut(s)	153, 285, 381, 396, 656, 786, 864, 965
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	4 cut(s)	215, 263, 482, 1020
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	6 cut(s)	68, 256, 392, 559, 730, 1172
HapII	CCGG	7 cut(s)	116, 200, 275, 389, 520, 978, 1196
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	8 cut(s)	82, 238, 529, 932, 943, 1073, 1192, 1214
HpaII	CCGG	7 cut(s)	116, 200, 275, 389, 520, 978, 1196
HphI	GGTGA	7 cut(s)	20, 119, 788, 860, 983, 995, 1210
Hpy166II	GTNNAC	5 cut(s)	386, 442, 517, 551, 567
Hpy188I	TCNGA	6 cut(s)	137, 192, 367, 699, 1072, 1180
Hpy188III	TCNNGA	5 cut(s)	89, 242, 954, 1053, 1218
Hpy8I	GTNNAC	5 cut(s)	386, 442, 517, 551, 567
Hpy99I	CGWCG	2 cut(s)	211, 367
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	231, 262, 386, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 271, 625
HpyF3I	CTNAG	2 cut(s)	827, 1177
HpySE526I	ACGT	1 cut(s)	38
HspAI	GCGC	1 cut(s)	593
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
KspI	CCGCGG	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	175, 793, 805
LmnI	GCTCC	5 cut(s)	367, 616, 625, 1062, 1100
Lsp1109I	GCAGC	4 cut(s)	201, 274, 493, 1006
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	8 cut(s)	153, 285, 381, 396, 656, 786, 864, 965
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	7 cut(s)	8, 89, 107, 466, 649, 704, 1004
MalI	GATC	3 cut(s)	177, 795, 807
MbiI	CCGCTC	1 cut(s)	791
MboI	GATC	3 cut(s)	175, 793, 805
MboII	GAAGA	4 cut(s)	35, 77, 652, 1213
MhlI	GDGCHC	2 cut(s)	20, 388
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	2 cut(s)	460, 851
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	3 cut(s)	345, 886, 1169
Mox20I	TGGCCA	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	2 cut(s)	169, 246
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	7 cut(s)	116, 200, 275, 389, 520, 978, 1196
MspR9I	CCNGG	3 cut(s)	53, 354, 1162
MvaI	CCWGG	3 cut(s)	53, 354, 1162
MvnI	CGCG	2 cut(s)	48, 843
MwoI	GCNNNNNNNGC	3 cut(s)	262, 271, 625
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	3 cut(s)	175, 793, 805
NgoMIV	GCCGGC	1 cut(s)	115
NlaIV	GGNNCC	5 cut(s)	327, 369, 401, 627, 783
NmuCI	GTSAC	5 cut(s)	8, 89, 107, 466, 649
NspI	RCATGY	2 cut(s)	352, 674
PagI	TCATGA	2 cut(s)	241, 1217
PciI	ACATGT	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 368
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	7 cut(s)	82, 238, 932, 943, 1073, 1192, 1214
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	216, 264, 483, 1021
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	51, 352, 1160
PspGI	CCWGG	3 cut(s)	51, 352, 1160
PspN4I	GGNNCC	5 cut(s)	327, 369, 401, 627, 783
PspPI	GGNCC	3 cut(s)	522, 728, 1170
PstNI	CAGNNNCTG	1 cut(s)	826
RsaI	GTAC	3 cut(s)	443, 566, 839
RsaNI	GTAC	3 cut(s)	442, 565, 838
RseI	CAYNNNNRTG	2 cut(s)	169, 246
SacII	CCGCGG	1 cut(s)	844
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	215, 263, 482, 1020
Sau3AI	GATC	3 cut(s)	175, 793, 805
Sau96I	GGNCC	3 cut(s)	522, 728, 1170
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	3 cut(s)	53, 354, 1162
SduI	GDGCHC	2 cut(s)	20, 388
SfaNI	GCATC	1 cut(s)	580
Sfr303I	CCGCGG	1 cut(s)	844
SgrBI	CCGCGG	1 cut(s)	844
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	169, 246
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	2 cut(s)	460, 851
SsiI	CCGC	3 cut(s)	791, 841, 843
SspMI	CTAG	8 cut(s)	153, 285, 381, 396, 656, 786, 864, 965
StyD4I	CCNGG	3 cut(s)	51, 352, 1160
StyI	CCWWGG	1 cut(s)	1117
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	290, 449
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	2 cut(s)	460, 851
TatI	WGTACW	2 cut(s)	441, 564
TfiI	GAWTC	7 cut(s)	82, 238, 932, 943, 1073, 1192, 1214
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	5 cut(s)	8, 89, 107, 466, 649
TseI	GCWGC	4 cut(s)	214, 262, 481, 1019
Tsp45I	GTSAC	5 cut(s)	8, 89, 107, 466, 649
TspDTI	ATGAA	6 cut(s)	153, 422, 665, 725, 1117, 1206
TspRI	CASTG	1 cut(s)	831
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	2 cut(s)	352, 674
XspI	CTAG	8 cut(s)	153, 285, 381, 396, 656, 786, 864, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.