FvH4_4g30980

methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016641
Physical Location & Seq
Forward (+)
30339105 .. 30340962
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30980.t1

Sequence Viewer

Length: 1401 bp
ATGGATACAGCTTCGGCTACTACAATGAAAGCCCTCAACTTCCTTGCAACTTCAACCACCCAAAGAACTAACTTCACCTCTCAAACTCTACCCACTAAATCAAACTCCCACTCTCTTCATCTCCAAAGCTCAAACACCAGAAGAAGCAGAGCCATCTCCCTCAGTCGCTGCTCCACAAAGCCAGACACAGACACCGACAACCAGAAAGACCAAAATTCGACCGTTGAGCCCAATTTAAATTCCAAACCCCTAAACCCTTCCCCACCCACTTCAATTGATCAACTTTCTACTCCTGCATCATCATTTCCTTGTTCTAAAGGATTGGTGTTCGATTTGGGCGTGGAGAGTTCATGGGACGGAGCCGGAGTTGGGTCCCCAGTTGTAAAGAGATTCCTTGGCGACGAGGAAGAGAGATGGTACATGTGGTATCACGGCCGGTCCGATTCAAATCCCGGTTCGGATTCGATTGGATTAGCGGTTTCGAGTAATGGGGTTCACTGGAACCGAGGAAGAGGAGCGGTTCAGTCGAGCCAGGATGTTGGTTTGGTGATGAGTAGCGGCAAAGATTGGTGGGCATTTGATACTTTAAGCATTAGGCCTTCCGAGGTTGTGGTCATGTCGAGCTCAAAGGTTAGAGCTTCTAGTGCTGTTTATTGGCTTTATTACACTGGTTATAGTCCGGAGAAGGCGGAGATTTCTGAGGTTCCGATCGGTTTGGAGAATCCGGAACGGTCCGGGGAGGTGTTCAAGTCTTTGCCTGGCTTGGCAATCAGCCAAGATGGGAGGCATTGGGCTAGAATTGAAGGAGAGCATCATAGTGGGGCTTTGTTTGATGTGGGGTTGGAGAAGGAGTGGGATTCTTCTTTCATTGCTGGGTCTCATGTTGTGTTTCATAAGAGAGGGGATCTTAGAATGTATTACCATTCATTTGATTTGGAGAGTGGGCACTATGGCATTGGGATTGCAAGGTCTAGGGATGGGATGAAGTGGATCAAAATGGGGAAGATAATTGGGGGAGGGAGGAATGGTGGGTTTGATGAGTTGGGGGCAATGAATCCTTGTGTGGTTAGGAAAAGGGGAGGTGGGGAGTATTTGATGGCATATGAAGGTGTTGATGGGAATGGAGGGAGGAGTATTGGGTTGGCAATTTCAAGAGATGGGCTGAAGGAGTGGACAAGGTGTGGAGATGCGGTGGTGTTGAAGTCATCGGAAGGATCAGGGTGGGATAGCAAAGGGGTTGGGTCACCATGCTTGGTTCAAATGGATGGGGAAGAAGATGAGTGGAGGTTGTATTATAGAGGTGTTGGGAATGGGGAACGAACAGGGATTGGAATGGCGGTTTCAGAAGGGAGTGATTACAGAAGGTTTAGACGATGGGAAGGATTTCATTTGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

467

Amino Acids

51.04

Weight (kDa)

6.21

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26761
fragaria_vesca FvH4_4g30980
malus_domestica MD16G1068900.v1.1
prunus_persica Prupe.1G278300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0439341
rosa_laevigata RLG00000006279
rosa_multiflora Rmu_ssc0000171.1_g000010
rosa_roxburghii Rroxscaffold_5G00380280
rosa_rugosa Rorug04G0317700
rosa_samantha Rh4AG368400 Rh4BG380400 Rh4CG394800 Rh4DG374700
rosa_wichuraiana Rw0G002750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 518
AccIII TCCGGA 2 cut(s) 679, 724
AciI CCGC 6 cut(s) 476, 518, 558, 689, 1190, 1337
AclWI GGATC 3 cut(s) 912, 998, 1222
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 2 cut(s) 214, 238
AcuI CTGAAG 1 cut(s) 1184
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 8 cut(s) 54, 273, 447, 748, 803, 1152, 1201, 1259
AjnI CCWGG 2 cut(s) 531, 757
AluBI AGCT 4 cut(s) 11, 129, 624, 638
AluI AGCT 4 cut(s) 11, 129, 624, 638
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 3 cut(s) 912, 998, 1222
AlwNI CAGNNNCTG 1 cut(s) 168
Aor13HI TCCGGA 2 cut(s) 679, 724
AoxI GGCC 2 cut(s) 433, 596
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 214, 238
Asp700I GAANNNNTTC 1 cut(s) 1383
AspS9I GGNCC 3 cut(s) 372, 438, 732
AsuC2I CCSGG 2 cut(s) 453, 736
AsuHPI GGTGA 3 cut(s) 67, 559, 1236
AvaII GGWCC 3 cut(s) 372, 438, 732
BaeGI GKGCMC 1 cut(s) 948
BanII GRGCYC 2 cut(s) 231, 626
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 155
BccI CCATC 9 cut(s) 161, 408, 773, 971, 1090, 1109, 1151, 1259, 1368
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 2 cut(s) 533, 759
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 2 cut(s) 453, 736
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 3 cut(s) 642, 795, 972
BisI GCNGC 2 cut(s) 169, 559
BlsI GCNGC 2 cut(s) 170, 560
Bme1390I CCNGG 4 cut(s) 453, 533, 736, 759
Bme18I GGWCC 3 cut(s) 372, 438, 732
BmgT120I GGNCC 3 cut(s) 372, 438, 732
BmiI GGNNCC 5 cut(s) 361, 373, 374, 503, 705
BmrFI CCNGG 4 cut(s) 453, 533, 736, 759
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 3 cut(s) 305, 820, 1177
BmuI ACTGGG 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 453, 736
BsaBI GATNNNNATC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 394, 505, 603, 735
BsaWI WCCGGW 2 cut(s) 679, 724
BsaXI ACNNNNNCTCC 8 cut(s) 351, 381, 836, 866, 1012, 1042, 1176, 1206
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 3 cut(s) 377, 503, 673
Bse3DI GCAATG 2 cut(s) 867, 1056
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 2 cut(s) 679, 724
BseBI CCWGG 2 cut(s) 533, 759
BseDI CCNNGG 4 cut(s) 394, 505, 603, 735
BseGI GGATG 4 cut(s) 541, 982, 987, 1270
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 2 cut(s) 867, 1056
BseMII CTCAG 2 cut(s) 175, 690
BseNI ACTGG 3 cut(s) 377, 503, 673
BseRI GAGGAG 2 cut(s) 528, 1144
BseSI GKGCMC 1 cut(s) 948
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 872
Bsh1285I CGRYCG 3 cut(s) 222, 436, 711
BshFI GGCC 2 cut(s) 435, 598
BsiEI CGRYCG 3 cut(s) 222, 436, 711
BsiHKAI GWGCWC 1 cut(s) 626
BsiSI CCGG 6 cut(s) 363, 436, 453, 680, 725, 735
BslFI GGGAC 2 cut(s) 358, 368
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 2 cut(s) 358, 368
BsnI GGCC 2 cut(s) 435, 598
Bso31I GGTCTC 1 cut(s) 882
Bsp1286I GDGCHC 3 cut(s) 231, 626, 948
Bsp13I TCCGGA 2 cut(s) 679, 724
Bsp143I GATC 5 cut(s) 277, 708, 904, 990, 1214
BspACI CCGC 6 cut(s) 476, 518, 558, 689, 1190, 1337
BspANI GGCC 2 cut(s) 435, 598
BspCNI CTCAG 2 cut(s) 174, 691
BspEI TCCGGA 2 cut(s) 679, 724
BspLI GGNNCC 5 cut(s) 361, 373, 374, 503, 705
BspPI GGATC 3 cut(s) 912, 998, 1222
BspTNI GGTCTC 1 cut(s) 882
BsrBI CCGCTC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 867, 1056
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 3 cut(s) 377, 503, 673
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 4 cut(s) 394, 505, 603, 735
BssMI GATC 5 cut(s) 277, 708, 904, 990, 1214
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 533, 759
Bst4CI ACNGT 2 cut(s) 223, 732
Bst6I CTCTTC 3 cut(s) 120, 402, 505
BstDEI CTNAG 3 cut(s) 161, 699, 908
BstEII GGTNACC 1 cut(s) 1242
BstF5I GGATG 4 cut(s) 541, 982, 987, 1270
BstKTI GATC 5 cut(s) 280, 711, 907, 993, 1217
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 5 cut(s) 277, 708, 904, 990, 1214
BstMCI CGRYCG 3 cut(s) 222, 436, 711
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 2 cut(s) 533, 759
BstNSI RCATGY 1 cut(s) 424
BstPI GGTNACC 1 cut(s) 1242
BstSCI CCNGG 4 cut(s) 451, 531, 734, 757
BstSLI GKGCMC 1 cut(s) 948
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 904
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 1 cut(s) 904
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 2 cut(s) 435, 598
BtsCI GGATG 4 cut(s) 541, 982, 987, 1270
BtsIMutI CAGTG 2 cut(s) 496, 666
CaiI CAGNNNCTG 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 3 cut(s) 372, 438, 732
CpoI CGGWCCG 2 cut(s) 438, 732
Csp6I GTAC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CspI CGGWCCG 2 cut(s) 438, 732
CviAII CATG 5 cut(s) 351, 421, 616, 881, 1248
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 161, 699, 908
DpnI GATC 5 cut(s) 279, 710, 906, 992, 1216
DpnII GATC 5 cut(s) 277, 708, 904, 990, 1214
DraI TTTAAA 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 433
EagI CGGCCG 1 cut(s) 433
Eam1104I CTCTTC 3 cut(s) 120, 402, 505
EarI CTCTTC 3 cut(s) 120, 402, 505
EciI GGCGGA 1 cut(s) 704
Ecl136II GAGCTC 1 cut(s) 624
EclXI CGGCCG 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 2 cut(s) 231, 626
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 3 cut(s) 372, 438, 732
Eco52I CGGCCG 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 1184
Eco91I GGTNACC 1 cut(s) 1242
EcoICRI GAGCTC 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 372
EcoO65I GGTNACC 1 cut(s) 1242
EcoRII CCWGG 2 cut(s) 531, 757
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 2 cut(s) 231, 626
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 354, 424, 619, 884, 1251
FaqI GGGAC 2 cut(s) 358, 368
FatI CATG 5 cut(s) 350, 420, 615, 880, 1247
FauNDI CATATG 1 cut(s) 1102
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 169, 559
FokI GGATG 4 cut(s) 548, 989, 994, 1277
FriOI GRGCYC 2 cut(s) 231, 626
Fsp4HI GCNGC 2 cut(s) 169, 559
FspBI CTAG 3 cut(s) 642, 795, 972
GluI GCNGC 2 cut(s) 169, 559
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 2 cut(s) 435, 598
HapII CCGG 6 cut(s) 363, 436, 453, 680, 725, 735
Hin1II CATG 5 cut(s) 354, 424, 619, 884, 1251
HinfI GANTC 6 cut(s) 390, 443, 461, 721, 857, 1054
HpaII CCGG 6 cut(s) 363, 436, 453, 680, 725, 735
HphI GGTGA 3 cut(s) 67, 559, 1236
Hpy166II GTNNAC 2 cut(s) 496, 1173
Hpy188I TCNGA 7 cut(s) 442, 460, 604, 700, 708, 1210, 1345
Hpy188III TCNNGA 3 cut(s) 680, 725, 1152
Hpy8I GTNNAC 2 cut(s) 496, 1173
Hpy99I CGWCG 1 cut(s) 404
HpyCH4III ACNGT 2 cut(s) 223, 732
HpyCH4V TGCA 4 cut(s) 47, 296, 965, 1393
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 3 cut(s) 161, 699, 908
Hsp92II CATG 5 cut(s) 354, 424, 619, 884, 1251
KflI GGGWCCC 1 cut(s) 372
Kpn2I TCCGGA 2 cut(s) 679, 724
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 5 cut(s) 277, 708, 904, 990, 1214
LmnI GCTCC 3 cut(s) 176, 359, 515
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 3 cut(s) 305, 820, 1177
MaeI CTAG 3 cut(s) 642, 795, 972
MaeIII GTNAC 1 cut(s) 1242
MalI GATC 5 cut(s) 279, 710, 906, 992, 1216
MbiI CCGCTC 1 cut(s) 518
MboI GATC 5 cut(s) 277, 708, 904, 990, 1214
MboII GAAGA 8 cut(s) 107, 153, 419, 522, 852, 1015, 1283, 1286
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 231, 626, 948
MluCI AATT 7 cut(s) 214, 232, 238, 273, 798, 1008, 1146
MmeI TCCRAC 1 cut(s) 822
MroI TCCGGA 2 cut(s) 679, 724
MroXI GAANNNNTTC 1 cut(s) 1383
MseI TTAA 2 cut(s) 236, 587
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 6 cut(s) 363, 436, 453, 680, 725, 735
MspR9I CCNGG 4 cut(s) 453, 533, 736, 759
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 2 cut(s) 533, 759
MwoI GCNNNNNNNGC 1 cut(s) 644
NciI CCSGG 2 cut(s) 453, 736
NdeI CATATG 1 cut(s) 1102
NdeII GATC 5 cut(s) 277, 708, 904, 990, 1214
NlaIII CATG 5 cut(s) 354, 424, 619, 884, 1251
NlaIV GGNNCC 5 cut(s) 361, 373, 374, 503, 705
NmuCI GTSAC 1 cut(s) 1242
NspI RCATGY 1 cut(s) 424
PceI AGGCCT 1 cut(s) 598
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 438
PdmI GAANNNNTTC 1 cut(s) 1383
PfeI GAWTC 6 cut(s) 390, 443, 461, 721, 857, 1054
PkrI GCNGC 2 cut(s) 170, 560
Ple19I CGATCG 1 cut(s) 711
PpuMI RGGWCCY 1 cut(s) 372
PscI ACATGT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 531, 757
PspEI GGTNACC 1 cut(s) 1242
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 531, 757
PspN4I GGNNCC 5 cut(s) 361, 373, 374, 503, 705
PspPI GGNCC 3 cut(s) 372, 438, 732
PspPPI RGGWCCY 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 904
PvuI CGATCG 1 cut(s) 711
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 816
Rsr2I CGGWCCG 2 cut(s) 438, 732
RsrII CGGWCCG 2 cut(s) 438, 732
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 2 cut(s) 236, 587
SatI GCNGC 2 cut(s) 169, 559
Sau3AI GATC 5 cut(s) 277, 708, 904, 990, 1214
Sau96I GGNCC 3 cut(s) 372, 438, 732
ScrFI CCNGG 4 cut(s) 453, 533, 736, 759
SduI GDGCHC 3 cut(s) 231, 626, 948
SfaNI GCATC 3 cut(s) 305, 820, 1177
SinI GGWCC 3 cut(s) 372, 438, 732
SmiI ATTTAAAT 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 7 cut(s) 214, 232, 238, 273, 798, 1008, 1146
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 6 cut(s) 476, 518, 558, 689, 1190, 1337
SspMI CTAG 3 cut(s) 642, 795, 972
SstI GAGCTC 1 cut(s) 626
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 4 cut(s) 451, 531, 734, 757
StyI CCWWGG 1 cut(s) 394
SwaI ATTTAAAT 1 cut(s) 237
TaaI ACNGT 2 cut(s) 223, 732
TaqI TCGA 6 cut(s) 218, 330, 464, 482, 527, 620
TasI AATT 7 cut(s) 214, 232, 238, 273, 798, 1008, 1146
TauI GCSGC 1 cut(s) 561
TfiI GAWTC 6 cut(s) 390, 443, 461, 721, 857, 1054
Tru1I TTAA 2 cut(s) 236, 587
Tru9I TTAA 2 cut(s) 236, 587
TscAI CASTG 2 cut(s) 503, 673
TseFI GTSAC 1 cut(s) 1242
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 1242
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 503, 673
VpaK11BI GGWCC 3 cut(s) 372, 438, 732
XapI RAATTY 2 cut(s) 214, 238
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 1383
XspI CTAG 3 cut(s) 642, 795, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.