MD16G1068900.v1.1

methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016641
Physical Location & Seq
Forward (+)
4861327 .. 4862778
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1068900.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGATGCCGCAGCAGCTTCTGCTACAACAATGAAAGCCGTTAACTTCCTAGGAACTCCGGTCACCCAAAGAATTACTACCCCGACTACCTTAACCTCTTCGATTCCTAACTGTAACACGAAAATTCACTCTCTTTATCTCCCAAACTCCAACCCCAGAAACAGAGCTATTCCTCTGCTCCCTCGCTGCTCCACAAAGCCTGGCACCGACACCACCGACAACGAAAACCCACAAAATTCGACCGTTGAACCCAATTTAGATTCAAACCCCACGAACCCATCAACACCCTCTTGGAAAGATGCAATCTTTTCTCCTATACCACCATCAATTTCTTATTCTGTCACCAAAGGATTGGTATTCGATTTGGGTTTGGAAGGTTCGTGGGACAGCGCAGAAGTCGGGTCACCAGTTGTGAAGAGGTTTCTGGGTGATGAGGAAGAGAGATGGTACATGTGGTACTATGGCAGTTCGAATTCGGAGGGTTCGGATTCGATTGGGTTAGCAGTTTCGAGCAATGGGGTTCATTGGGAAAGAGGCGGAGGAGCAGTTCAGTCGAGCCAGGACGTGGGAGCGGTGATCAATTGCGGGAAAGATTGGTGGGCGTTTGACACCCAGAGCATTAGGCCCTCTGAGGTGGTGGTCATGTCCAGCTCAAAGGTCAGAGCTTCCAGCGCTGTTTACTGGCTCTATTACACTGGCTACAGCGCTGAGGAGGCAGAGATTTCTTCCGATCGTCGCAATTTGGAACTGGATTTGGAGAACCCGGAAAGGATGAAGAATGGTGCGAATGCCAGGAAGATTTTGAAGTCTTTGCCTGGACTGGCAATTAGTCAGGATGGGAGGCATTGGGCAAGGATTGAAGGGGAGCATCACAGCGGGGCGCTTTTCGATGTGGGACTGCAGGAAGAGTGGGATTCTTCATTTGTTGCAGCTCCTCATGTTGTTTATCATGAGAGTGGTGATCTTAGAATGTATTACCATTCATTTAATTTGGAAAATGGGGTTTATTCAATTGGGATTGCAAGATCAAGGGATGGGATTAAGTGGGTAAAGTTGGGGAAAATAATCGGGGGAGGAAGAAGTGGAGGGTTTGATGAGATGGGAGCAATGAATCCATGTGTGGTGAGGAACAAGAAAGATGGGGATTATTTGATGGCATACGAAGGTGTTTGTGCAGATGGAGGGAGGGGGATTGGATTGGCTGTGTCCAAAGATGGTTTGAAGGACTGGACAAAGATTGGAGATGGGGTGGTACTAGGGGCATCTGAGGAATGTGGGTGGGATAACAAAGGGGTTGGATCTCCATGTTTGGTTCAGATGGATGGGGAAGAAGATGAGTGGAGGTTGTATTATAGAGGTGTTGGGGATGGGGGGAGGAGTGGGATTGGGATGGCAGTTTCAGAAGGGAGTGATGTTAGAAGGTTTAGAAGATGGGCAGGTTTCCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

52.57

Weight (kDa)

5.29

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26761
fragaria_vesca FvH4_4g30980
malus_domestica MD16G1068900.v1.1
prunus_persica Prupe.1G278300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0439341
rosa_laevigata RLG00000006279
rosa_multiflora Rmu_ssc0000171.1_g000010
rosa_roxburghii Rroxscaffold_5G00380280
rosa_rugosa Rorug04G0317700
rosa_samantha Rh4AG368400 Rh4BG380400 Rh4CG394800 Rh4DG374700
rosa_wichuraiana Rw0G002750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1427
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 565
AccBSI CCGCTC 1 cut(s) 572
AciI CCGC 5 cut(s) 9, 537, 572, 585, 876
AclWI GGATC 1 cut(s) 1306
AcsI RAATTY 3 cut(s) 123, 235, 472
AfaI GTAC 3 cut(s) 449, 458, 1254
AfeI AGCGCT 2 cut(s) 673, 706
AfiI CCNNNNNNNGG 1 cut(s) 565
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 6 cut(s) 248, 264, 805, 860, 1011, 1222
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 4 cut(s) 199, 558, 791, 814
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 5 cut(s) 17, 167, 651, 665, 932
AluI AGCT 5 cut(s) 17, 167, 651, 665, 932
AlwI GGATC 1 cut(s) 1306
AlwNI CAGNNNCTG 1 cut(s) 20
Aor51HI AGCGCT 2 cut(s) 673, 706
AoxI GGCC 1 cut(s) 623
ApeKI GCWGC 4 cut(s) 11, 14, 186, 929
ApoI RAATTY 3 cut(s) 123, 235, 472
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 4 cut(s) 392, 674, 707, 883
AspS9I GGNCC 1 cut(s) 624
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 7 cut(s) 55, 334, 396, 440, 586, 971, 1135
AsuII TTCGAA 1 cut(s) 470
AvrII CCTAGG 1 cut(s) 49
BanI GGYRCC 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 4 cut(s) 23, 26, 173, 941
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 4 cut(s) 201, 560, 793, 816
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 1 cut(s) 764
BfaI CTAG 2 cut(s) 50, 1256
BfmI CTRYAG 2 cut(s) 700, 899
BfoI RGCGCY 3 cut(s) 675, 708, 884
BfuAI ACCTGC 1 cut(s) 1427
BisI GCNGC 5 cut(s) 9, 12, 15, 187, 930
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 5 cut(s) 10, 13, 16, 188, 931
Bme1390I CCNGG 5 cut(s) 201, 560, 764, 793, 816
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 5 cut(s) 201, 560, 764, 793, 816
BmsI GCATC 3 cut(s) 289, 877, 1271
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 4 cut(s) 531, 561, 1233, 1263
Bsc4I CCNNNNNNNGG 1 cut(s) 565
Bse1I ACTGG 6 cut(s) 407, 686, 700, 753, 825, 1232
Bse3DI GCAATG 2 cut(s) 520, 1113
BseBI CCWGG 4 cut(s) 201, 560, 793, 816
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 7 cut(s) 10, 777, 841, 1039, 1327, 1372, 1395
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMI GCAATG 2 cut(s) 520, 1113
BseMII CTCAG 3 cut(s) 621, 699, 1257
BseNI ACTGG 6 cut(s) 407, 686, 700, 753, 825, 1232
BseRI GAGGAG 4 cut(s) 555, 725, 924, 1390
BseXI GCAGC 4 cut(s) 23, 26, 173, 941
BsgI GTGCAG 1 cut(s) 1194
Bsh1285I CGRYCG 2 cut(s) 243, 733
BshFI GGCC 1 cut(s) 625
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 2 cut(s) 243, 733
BsiSI CCGG 2 cut(s) 59, 764
BslFI GGGAC 2 cut(s) 398, 909
BslI CCNNNNNNNGG 1 cut(s) 565
BsmFI GGGAC 2 cut(s) 398, 909
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 1 cut(s) 625
Bsp119I TTCGAA 1 cut(s) 470
Bsp143I GATC 5 cut(s) 576, 730, 961, 1025, 1298
BspACI CCGC 5 cut(s) 9, 537, 572, 585, 876
BspANI GGCC 1 cut(s) 625
BspCNI CTCAG 3 cut(s) 622, 700, 1258
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 903
BspMI ACCTGC 1 cut(s) 1427
BspPI GGATC 1 cut(s) 1306
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 520, 1113
BsrI ACTGG 6 cut(s) 407, 686, 700, 753, 825, 1232
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 5 cut(s) 576, 730, 961, 1025, 1298
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 4 cut(s) 201, 560, 793, 816
Bst4CI ACNGT 2 cut(s) 113, 244
Bst6I CTCTTC 4 cut(s) 103, 410, 432, 900
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 470
BstDEI CTNAG 4 cut(s) 630, 708, 965, 1266
BstEII GGTNACC 2 cut(s) 61, 402
BstF5I GGATG 7 cut(s) 10, 777, 841, 1039, 1327, 1372, 1395
BstH2I RGCGCY 3 cut(s) 675, 708, 884
BstHHI GCGC 4 cut(s) 392, 674, 707, 883
BstKTI GATC 5 cut(s) 579, 733, 964, 1028, 1301
BstMBI GATC 5 cut(s) 576, 730, 961, 1025, 1298
BstMCI CGRYCG 2 cut(s) 243, 733
BstMWI GCNNNNNNNGC 4 cut(s) 14, 20, 671, 713
BstNI CCWGG 4 cut(s) 201, 560, 793, 816
BstNSI RCATGY 1 cut(s) 454
BstPI GGTNACC 2 cut(s) 61, 402
BstSCI CCNGG 5 cut(s) 199, 558, 762, 791, 814
BstSFI CTRYAG 2 cut(s) 700, 899
BstV1I GCAGC 4 cut(s) 23, 26, 173, 941
BstX2I RGATCY 1 cut(s) 1298
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 1 cut(s) 1298
BsuRI GGCC 1 cut(s) 625
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 7 cut(s) 10, 777, 841, 1039, 1327, 1372, 1395
BtsIMutI CAGTG 1 cut(s) 693
BveI ACCTGC 1 cut(s) 1427
CaiI CAGNNNCTG 1 cut(s) 20
CciI TCATGA 1 cut(s) 949
CfoI GCGC 4 cut(s) 392, 674, 707, 883
Cfr13I GGNCC 1 cut(s) 624
Csp6I GTAC 3 cut(s) 448, 457, 1253
CviAII CATG 6 cut(s) 451, 643, 938, 950, 1116, 1305
CviQI GTAC 3 cut(s) 448, 457, 1253
DdeI CTNAG 4 cut(s) 630, 708, 965, 1266
DpnI GATC 5 cut(s) 578, 732, 963, 1027, 1300
DpnII GATC 5 cut(s) 576, 730, 961, 1025, 1298
Eam1104I CTCTTC 4 cut(s) 103, 410, 432, 900
EarI CTCTTC 4 cut(s) 103, 410, 432, 900
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 49
Eco47III AGCGCT 2 cut(s) 673, 706
Eco91I GGTNACC 2 cut(s) 61, 402
EcoO109I RGGNCCY 1 cut(s) 624
EcoO65I GGTNACC 2 cut(s) 61, 402
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 4 cut(s) 199, 558, 791, 814
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 6 cut(s) 454, 646, 941, 953, 1119, 1308
FaqI GGGAC 2 cut(s) 398, 909
FatI CATG 6 cut(s) 450, 642, 937, 949, 1115, 1304
FauI CCCGC 2 cut(s) 578, 869
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 5 cut(s) 9, 12, 15, 187, 930
FokI GGATG 7 cut(s) 17, 784, 848, 1046, 1334, 1379, 1402
Fsp4HI GCNGC 5 cut(s) 9, 12, 15, 187, 930
FspBI CTAG 2 cut(s) 50, 1256
GlaI GCGC 4 cut(s) 391, 673, 706, 882
GluI GCNGC 5 cut(s) 9, 12, 15, 187, 930
HaeII RGCGCY 3 cut(s) 675, 708, 884
HaeIII GGCC 1 cut(s) 625
HapII CCGG 2 cut(s) 59, 764
HhaI GCGC 4 cut(s) 392, 674, 707, 883
Hin1II CATG 6 cut(s) 454, 646, 941, 953, 1119, 1308
Hin6I GCGC 4 cut(s) 390, 672, 705, 881
HinP1I GCGC 4 cut(s) 390, 672, 705, 881
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 103, 260, 488, 914, 1111
HpaI GTTAAC 1 cut(s) 43
HpaII CCGG 2 cut(s) 59, 764
HphI GGTGA 7 cut(s) 55, 334, 396, 440, 586, 971, 1135
Hpy166II GTNNAC 2 cut(s) 43, 679
Hpy188I TCNGA 8 cut(s) 478, 487, 631, 662, 730, 1267, 1317, 1402
Hpy188III TCNNGA 2 cut(s) 833, 950
Hpy8I GTNNAC 2 cut(s) 43, 679
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 6 cut(s) 368, 854, 1157, 1216, 1397, 1413
HpyCH4III ACNGT 2 cut(s) 113, 244
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 5 cut(s) 302, 901, 929, 1022, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 20, 671, 713
HpyF3I CTNAG 4 cut(s) 630, 708, 965, 1266
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 6 cut(s) 454, 646, 941, 953, 1119, 1308
HspAI GCGC 4 cut(s) 390, 672, 705, 881
Ksp22I TGATCA 1 cut(s) 576
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 5 cut(s) 576, 730, 961, 1025, 1298
LmnI GCTCC 7 cut(s) 183, 194, 542, 569, 865, 937, 1103
Lsp1109I GCAGC 4 cut(s) 23, 26, 173, 941
LweI GCATC 3 cut(s) 289, 877, 1271
MaeI CTAG 2 cut(s) 50, 1256
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 4 cut(s) 61, 113, 340, 402
MalI GATC 5 cut(s) 578, 732, 963, 1027, 1300
MbiI CCGCTC 1 cut(s) 572
MboI GATC 5 cut(s) 576, 730, 961, 1025, 1298
MfeI CAATTG 2 cut(s) 580, 1011
MflI RGATCY 1 cut(s) 1298
MmeI TCCRAC 2 cut(s) 174, 1276
MseI TTAA 4 cut(s) 42, 92, 987, 1041
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 876
MspI CCGG 2 cut(s) 59, 764
MspR9I CCNGG 5 cut(s) 201, 560, 764, 793, 816
MunI CAATTG 2 cut(s) 580, 1011
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 4 cut(s) 201, 560, 793, 816
MwoI GCNNNNNNNGC 4 cut(s) 14, 20, 671, 713
NciI CCSGG 1 cut(s) 764
NdeII GATC 5 cut(s) 576, 730, 961, 1025, 1298
NlaIII CATG 6 cut(s) 454, 646, 941, 953, 1119, 1308
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 3 cut(s) 61, 340, 402
NspI RCATGY 1 cut(s) 454
NspV TTCGAA 1 cut(s) 470
PagI TCATGA 1 cut(s) 949
PciI ACATGT 1 cut(s) 450
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 5 cut(s) 103, 260, 488, 914, 1111
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 5 cut(s) 10, 13, 16, 188, 931
Ple19I CGATCG 1 cut(s) 733
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 4 cut(s) 199, 558, 791, 814
PspEI GGTNACC 2 cut(s) 61, 402
PspGI CCWGG 4 cut(s) 199, 558, 791, 814
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 624
PstI CTGCAG 1 cut(s) 903
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 1298
PvuI CGATCG 1 cut(s) 733
RsaI GTAC 3 cut(s) 449, 458, 1254
RsaNI GTAC 3 cut(s) 448, 457, 1253
RseI CAYNNNNRTG 1 cut(s) 954
SaqAI TTAA 4 cut(s) 42, 92, 987, 1041
SatI GCNGC 5 cut(s) 9, 12, 15, 187, 930
Sau3AI GATC 5 cut(s) 576, 730, 961, 1025, 1298
Sau96I GGNCC 1 cut(s) 624
ScrFI CCNGG 5 cut(s) 201, 560, 764, 793, 816
SfaNI GCATC 3 cut(s) 289, 877, 1271
SfcI CTRYAG 2 cut(s) 700, 899
SfuI TTCGAA 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 954
SsiI CCGC 5 cut(s) 9, 537, 572, 585, 876
SspMI CTAG 2 cut(s) 50, 1256
StyD4I CCNGG 5 cut(s) 199, 558, 762, 791, 814
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 113, 244
TaiI ACGT 1 cut(s) 567
TaqI TCGA 8 cut(s) 101, 239, 360, 470, 491, 509, 554, 888
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 5 cut(s) 103, 260, 488, 914, 1111
Tru1I TTAA 4 cut(s) 42, 92, 987, 1041
Tru9I TTAA 4 cut(s) 42, 92, 987, 1041
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 3 cut(s) 61, 340, 402
TseI GCWGC 4 cut(s) 11, 14, 186, 929
Tsp45I GTSAC 3 cut(s) 61, 340, 402
TspDTI ATGAA 6 cut(s) 47, 512, 788, 909, 972, 1124
TspRI CASTG 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 565
XapI RAATTY 3 cut(s) 123, 235, 472
XceI RCATGY 1 cut(s) 454
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 2 cut(s) 50, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.