Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0019144

Physical Location & Seq

Genomic Coordinates Forward (+)

30387329 .. 30389060

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAGCCAATAGTAGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTACTACCTCAAAAACCAAGCCATTTCTAAGCCGTGCCCTGTCTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCCTGGCAATTGCCTGAGAAAGCAGAGTTTGGAGAGAACGAATGGTACTTCTTCAGCCCCCGGGACCGGAAGTACCCGAACGGAGTCCGCCCAAATCGCGCCACCGTGTCGGGTTATTGGAAGGCCACCGGCACAGACAAGGCAATTCACAGTGCGTCTAAGTATGTGGGGGTGAAGAAGGCTCTTGTTTTCTACAAGGGTAGACCACCAAAGGGGATCAAGACAGATTGGATTATGCACGAGTATCGGTTAAGCGACTCGAAAAGACAAGCCACCAAGCAACTTGGATCCATGAGACTGGATGATTGGGTCCTGTGTAGGATCTATAAGAAGAGGCATGTCAACAAGGCTTATATGGACCCAAAACTTGAAGATTCAAGTCCCCAAATGGATCATTTTACAGCTGCTAATGATGTCAAAGAGGAACACGGGGTGAATTTCCCAAGGAATTTTTCCATTAGTAGCTTTCTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGAAAATCCGACCTATGATTTCCAGAACATGCTGGCTAGCAATGCAGGACTAAATGGCCAGACGTTCCAGTATGGTGATCAAATCCCATACCAAAGCGCAGACTCGGGGAAGTTCCAATTGATGAATCAGAGTAATAGCACCTTTAACCAACCATTATTTGTGAATCCAGCGTACAACAACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

289

Amino Acids

33.07

Weight (kDa)

8.31

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 134	6.4e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31070
rosa_chinensis	RchiOBHm_Chr4g0439451
rosa_laevigata	RLG00000006270
rosa_multiflora	Rmu_sc0007276.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380360
rosa_rugosa	Rorug04G0318400.1
rosa_samantha	Rh4BG381500
rosa_wichuraiana	Rw4G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	352
AccII	CGCG	1 cut(s)	249
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	6 cut(s)	143, 374, 432, 445, 479, 549
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	2 cut(s)	586, 598
AcuI	CTGAAG	1 cut(s)	187
AdeI	CACNNNGTG	1 cut(s)	583
AfaI	GTAC	4 cut(s)	74, 197, 224, 833
AfiI	CCNNNNNNNGG	2 cut(s)	216, 362
AgsI	TTSAA	4 cut(s)	521, 528, 658, 859
AjnI	CCWGG	2 cut(s)	31, 152
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AluBI	AGCT	4 cut(s)	18, 554, 615, 652
AluI	AGCT	4 cut(s)	18, 554, 615, 652
Alw26I	GTCTC	2 cut(s)	118, 439
AlwI	GGATC	6 cut(s)	143, 374, 432, 445, 479, 549
Ama87I	CYCGRG	2 cut(s)	210, 763
AoxI	GGCC	2 cut(s)	273, 715
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	2 cut(s)	586, 598
AspLEI	GCGC	2 cut(s)	251, 758
AspS9I	GGNCC	4 cut(s)	214, 460, 508, 638
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	3 cut(s)	334, 595, 746
AsuNHI	GCTAGC	1 cut(s)	695
AvaI	CYCGRG	2 cut(s)	210, 763
AvaII	GGWCC	4 cut(s)	214, 460, 508, 638
BaeGI	GKGCMC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	717
BamHI	GGATCC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	33, 154
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	211, 212
BcoDI	GTCTC	2 cut(s)	118, 439
BfaI	CTAG	1 cut(s)	696
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	4 cut(s)	33, 154, 211, 212
Bme18I	GGWCC	4 cut(s)	214, 460, 508, 638
BmeT110I	CYCGRG	2 cut(s)	210, 763
BmgT120I	GGNCC	4 cut(s)	214, 460, 508, 638
BmiI	GGNNCC	6 cut(s)	44, 215, 439, 461, 510, 639
BmrFI	CCNGG	4 cut(s)	33, 154, 211, 212
BmtI	GCTAGC	1 cut(s)	699
BpuMI	CCSGG	2 cut(s)	211, 212
BsaJI	CCNNGG	4 cut(s)	152, 209, 210, 593
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 362
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	453, 727
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	33, 154
BseDI	CCNNGG	4 cut(s)	152, 209, 210, 593
BseGI	GGATG	2 cut(s)	120, 457
BseLI	CCNNNNNNNGG	2 cut(s)	216, 362
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	453, 727
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	275, 717
BsiHKCI	CYCGRG	2 cut(s)	210, 763
BsiSI	CCGG	3 cut(s)	211, 217, 279
BslFI	GGGAC	3 cut(s)	227, 516, 651
BslI	CCNNNNNNNGG	2 cut(s)	216, 362
BsmAI	GTCTC	2 cut(s)	118, 439
BsmFI	GGGAC	3 cut(s)	227, 516, 651
BsnI	GGCC	2 cut(s)	275, 717
BsoBI	CYCGRG	2 cut(s)	210, 763
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	275, 717
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	6 cut(s)	44, 215, 439, 461, 510, 639
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	6 cut(s)	143, 374, 432, 445, 479, 549
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	453, 727
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	152, 209, 210, 593
BssMI	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	33, 154
Bst4CI	ACNGT	2 cut(s)	256, 302
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	693, 697
BstDEI	CTNAG	3 cut(s)	99, 165, 309
BstF5I	GGATG	2 cut(s)	120, 457
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	251, 758
BstKTI	GATC	6 cut(s)	151, 369, 440, 474, 544, 739
BstMAI	GTCTC	2 cut(s)	118, 439
BstMBI	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 701
BstNI	CCWGG	2 cut(s)	33, 154
BstNSI	RCATGY	2 cut(s)	491, 691
BstSCI	CCNGG	4 cut(s)	31, 152, 209, 210
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	2 cut(s)	437, 471
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	2 cut(s)	437, 471
BsuRI	GGCC	2 cut(s)	275, 717
BtsCI	GGATG	2 cut(s)	120, 457
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	693, 697
CfoI	GCGC	2 cut(s)	251, 758
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	214, 460, 508, 638
Cfr9I	CCCGGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	4 cut(s)	73, 196, 223, 832
CviAII	CATG	5 cut(s)	442, 488, 625, 688, 847
CviQI	GTAC	4 cut(s)	73, 196, 223, 832
DdeI	CTNAG	3 cut(s)	99, 165, 309
DpnI	GATC	6 cut(s)	150, 368, 439, 473, 543, 738
DpnII	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
DraIII	CACNNNGTG	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	214, 460, 508, 638
Eco57I	CTGAAG	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	210, 763
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	31, 152
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	5 cut(s)	445, 491, 628, 691, 850
FaqI	GGGAC	3 cut(s)	227, 516, 651
FatI	CATG	5 cut(s)	441, 487, 624, 687, 846
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	107, 464
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	2 cut(s)	250, 757
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	652
HaeIII	GGCC	2 cut(s)	275, 717
HapII	CCGG	3 cut(s)	211, 217, 279
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	251, 758
Hin1II	CATG	5 cut(s)	445, 491, 628, 691, 850
Hin6I	GCGC	2 cut(s)	249, 756
HinP1I	GCGC	2 cut(s)	249, 756
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	6 cut(s)	234, 407, 524, 761, 784, 823
HpaII	CCGG	3 cut(s)	211, 217, 279
HphI	GGTGA	3 cut(s)	334, 595, 746
Hpy166II	GTNNAC	3 cut(s)	73, 353, 493
Hpy188I	TCNGA	2 cut(s)	669, 789
Hpy188III	TCNNGA	4 cut(s)	21, 370, 620, 682
Hpy8I	GTNNAC	3 cut(s)	73, 353, 493
HpyAV	CCTTC	2 cut(s)	265, 322
HpyCH4III	ACNGT	2 cut(s)	256, 302
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	2 cut(s)	388, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 701
HpyF3I	CTNAG	3 cut(s)	99, 165, 309
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	5 cut(s)	445, 491, 628, 691, 850
HspAI	GCGC	2 cut(s)	249, 756
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
Lsp1109I	GCAGC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	722
MalI	GATC	6 cut(s)	150, 368, 439, 473, 543, 738
MboI	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
MboII	GAAGA	4 cut(s)	193, 337, 493, 533
MfeI	CAATTG	2 cut(s)	158, 776
MflI	RGATCY	2 cut(s)	437, 471
MhlI	GDGCHC	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	6 cut(s)	158, 294, 586, 598, 642, 776
MluNI	TGGCCA	1 cut(s)	717
MlyI	GAGTC	3 cut(s)	243, 401, 755
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	5 cut(s)	39, 52, 89, 477, 565
Mox20I	TGGCCA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	2 cut(s)	401, 804
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	3 cut(s)	211, 217, 279
MspR9I	CCNGG	4 cut(s)	33, 154, 211, 212
MunI	CAATTG	2 cut(s)	158, 776
MvaI	CCWGG	2 cut(s)	33, 154
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	246, 701
NciI	CCSGG	2 cut(s)	211, 212
NdeII	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	5 cut(s)	445, 491, 628, 691, 850
NlaIV	GGNNCC	6 cut(s)	44, 215, 439, 461, 510, 639
NspI	RCATGY	2 cut(s)	491, 691
PfeI	GAWTC	3 cut(s)	524, 784, 823
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	3 cut(s)	242, 401, 755
PpsI	GAGTC	3 cut(s)	242, 401, 755
PpuMI	RGGWCCY	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	31, 152
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	2 cut(s)	31, 152
PspN4I	GGNNCC	6 cut(s)	44, 215, 439, 461, 510, 639
PspPI	GGNCC	4 cut(s)	214, 460, 508, 638
PspPPI	RGGWCCY	1 cut(s)	460
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PsuI	RGATCY	2 cut(s)	437, 471
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	4 cut(s)	74, 197, 224, 833
RsaNI	GTAC	4 cut(s)	73, 196, 223, 832
SaqAI	TTAA	2 cut(s)	401, 804
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	6 cut(s)	148, 366, 437, 471, 541, 736
Sau96I	GGNCC	4 cut(s)	214, 460, 508, 638
SchI	GAGTC	3 cut(s)	243, 401, 755
ScrFI	CCNGG	4 cut(s)	33, 154, 211, 212
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	9 cut(s)	20, 44, 81, 556, 617, 654, 674, 725, 803
SinI	GGWCC	4 cut(s)	214, 460, 508, 638
SmaI	CCCGGG	1 cut(s)	212
Sse9I	AATT	6 cut(s)	158, 294, 586, 598, 642, 776
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	4 cut(s)	31, 152, 209, 210
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	256, 302
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	2 cut(s)	132, 410
TasI	AATT	6 cut(s)	158, 294, 586, 598, 642, 776
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	524, 784, 823
Tru1I	TTAA	2 cut(s)	401, 804
Tru9I	TTAA	2 cut(s)	401, 804
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	675, 797, 863
TspGWI	ACGGA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	4 cut(s)	214, 460, 508, 638
XapI	RAATTY	2 cut(s)	586, 598
XceI	RCATGY	2 cut(s)	491, 691
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.