Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019144

Physical Location & Seq

Genomic Coordinates Reverse (-)

5744023 .. 5745081

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGGCCAATAGTGGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTATTACCTCAAAAACCAAGCCATTTCAAAGCCGTGCCCTGTTTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCTTGGCAATTGCCTGAGAAAGCAGAGTTTGGAGAAAATGAATGGTACTTCTTCAGCCCCCGGGACCGGAAGTACCCGAACGGAGTCCGGCCCAATCGCGCAACCGTGTCAGGTTATTGGAAGGCCACGGGCACAGACAAGGCAATTCACAGTGCGTCTAAGTATGTGGGGGTGAAGAAGGCTCTTGTTTTCTACAAGGGTAGACCACCAAAGGGGGTCAAGACGGATTGGATTATGCATGAGTATCGGTTAAGTGATTCGAAAAGACAGGCCAGCAAGCAACTTGGGTCCATGAGATTGGATGATTGGGTCCTGTGTAGGATCTATAAGAAGAGGCATGTCAACAAGGCTTACTTGGATGATCCAAAACTTGAAGATTCAAGTCCCCAAATGGAGCATTTTACAGCTGCTAATGATGTCAAAGAGGAACAAGTGCTGAACTTCCCAAGGACATTTTCCATTAGTAGCCTTTTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGACAATCCGACTTATGATCTCCAGAACATGCTGGCCAATAATGCAGGACTAAATGGCCAGACGTTTCAGTTTGGTGATCAAATCCCATACCAAAGCGCAGACTCGGCGAGATTCCAAGTGATGAATCATAGTAGCACCTTTAACCAACCATTATTTGTGAATCCGGCGTACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

287

Amino Acids

32.78

Weight (kDa)

7.73

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 134	4.1e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31070
rosa_chinensis	RchiOBHm_Chr4g0439451
rosa_laevigata	RLG00000006270
rosa_multiflora	Rmu_sc0007276.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380360
rosa_rugosa	Rorug04G0318400.1
rosa_samantha	Rh4BG381500
rosa_wichuraiana	Rw4G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	352
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	3 cut(s)	143, 479, 506
AcoI	YGGCCR	2 cut(s)	696, 718
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	197, 224, 833
AfiI	CCNNNNNNNGG	2 cut(s)	216, 362
AgsI	TTSAA	5 cut(s)	99, 524, 531, 661, 853
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	589, 621
AluBI	AGCT	2 cut(s)	557, 655
AluI	AGCT	2 cut(s)	557, 655
AlwI	GGATC	3 cut(s)	143, 479, 506
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	6 cut(s)	6, 239, 273, 420, 696, 718
ApeKI	GCWGC	1 cut(s)	557
AspLEI	GCGC	2 cut(s)	251, 761
AspS9I	GGNCC	5 cut(s)	214, 240, 438, 460, 641
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	2 cut(s)	334, 749
AsuII	TTCGAA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	4 cut(s)	214, 438, 460, 641
BaeGI	GKGCMC	2 cut(s)	110, 284
BalI	TGGCCA	2 cut(s)	698, 720
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	739
BcnI	CCSGG	2 cut(s)	211, 212
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	33, 211, 212
Bme18I	GGWCC	4 cut(s)	214, 438, 460, 641
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	5 cut(s)	214, 240, 438, 460, 641
BmiI	GGNNCC	5 cut(s)	44, 215, 439, 461, 642
BmrFI	CCNGG	3 cut(s)	33, 211, 212
BpmI	CTGGAG	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	211, 212
BsaJI	CCNNGG	5 cut(s)	152, 209, 210, 276, 596
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 362
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	5 cut(s)	152, 209, 210, 276, 596
BseGI	GGATG	3 cut(s)	120, 457, 514
BseLI	CCNNNNNNNGG	2 cut(s)	216, 362
BseMII	CTCAG	1 cut(s)	156
BseSI	GKGCMC	2 cut(s)	110, 284
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	6 cut(s)	8, 241, 275, 422, 698, 720
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	211, 217, 238, 827
BslFI	GGGAC	3 cut(s)	227, 519, 654
BslI	CCNNNNNNNGG	2 cut(s)	216, 362
BsmFI	GGGAC	3 cut(s)	227, 519, 654
BsnI	GGCC	6 cut(s)	8, 241, 275, 422, 698, 720
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	110, 284
Bsp143I	GATC	5 cut(s)	148, 471, 511, 679, 739
BspANI	GGCC	6 cut(s)	8, 241, 275, 422, 698, 720
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	44, 215, 439, 461, 642
BspPI	GGATC	3 cut(s)	143, 479, 506
BspT104I	TTCGAA	1 cut(s)	410
BssECI	CCNNGG	5 cut(s)	152, 209, 210, 276, 596
BssMI	GATC	5 cut(s)	148, 471, 511, 679, 739
BssT1I	CCWWGG	2 cut(s)	152, 596
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	256, 302
Bst6I	CTCTTC	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	424, 428, 696
BstDEI	CTNAG	2 cut(s)	165, 309
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	120, 457, 514
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	251, 761
BstKTI	GATC	5 cut(s)	151, 474, 514, 682, 742
BstMBI	GATC	5 cut(s)	148, 471, 511, 679, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	704, 767
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	491, 694
BstSCI	CCNGG	3 cut(s)	31, 209, 210
BstSLI	GKGCMC	2 cut(s)	110, 284
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	471
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	6 cut(s)	8, 241, 275, 422, 698, 720
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	120, 457, 514
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	424, 428, 696
CfoI	GCGC	2 cut(s)	251, 761
Cfr13I	GGNCC	5 cut(s)	214, 240, 438, 460, 641
Cfr9I	CCCGGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	196, 223, 832
CviAII	CATG	6 cut(s)	389, 442, 488, 628, 691, 841
CviQI	GTAC	3 cut(s)	196, 223, 832
DdeI	CTNAG	2 cut(s)	165, 309
DpnI	GATC	5 cut(s)	150, 473, 513, 681, 741
DpnII	GATC	5 cut(s)	148, 471, 511, 679, 739
EaeI	YGGCCR	2 cut(s)	696, 718
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	152, 596
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	214, 438, 460, 641
Eco57I	CTGAAG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	152, 596
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	152, 596
FaeI	CATG	6 cut(s)	392, 445, 491, 631, 694, 844
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	3 cut(s)	227, 519, 654
FatI	CATG	6 cut(s)	388, 441, 487, 627, 690, 840
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	3 cut(s)	107, 464, 521
Fsp4HI	GCNGC	1 cut(s)	558
GlaI	GCGC	2 cut(s)	250, 760
GluI	GCNGC	1 cut(s)	558
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	6 cut(s)	8, 241, 275, 422, 698, 720
HapII	CCGG	4 cut(s)	211, 217, 238, 827
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	251, 761
Hin1II	CATG	6 cut(s)	392, 445, 491, 631, 694, 844
Hin6I	GCGC	2 cut(s)	249, 759
HinP1I	GCGC	2 cut(s)	249, 759
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	7 cut(s)	234, 407, 527, 764, 774, 787, 823
HpaII	CCGG	4 cut(s)	211, 217, 238, 827
HphI	GGTGA	2 cut(s)	334, 749
Hpy166II	GTNNAC	2 cut(s)	353, 493
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	3 cut(s)	21, 370, 685
Hpy8I	GTNNAC	2 cut(s)	353, 493
HpyAV	CCTTC	2 cut(s)	265, 322
HpyCH4III	ACNGT	2 cut(s)	256, 302
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	2 cut(s)	388, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	704, 767
HpyF3I	CTNAG	2 cut(s)	165, 309
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	6 cut(s)	392, 445, 491, 631, 694, 844
HspAI	GCGC	2 cut(s)	249, 759
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	148, 471, 511, 679, 739
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	1 cut(s)	544
MaeII	ACGT	1 cut(s)	725
MalI	GATC	5 cut(s)	150, 473, 513, 681, 741
MboI	GATC	5 cut(s)	148, 471, 511, 679, 739
MboII	GAAGA	4 cut(s)	193, 337, 493, 536
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	110, 284
MlsI	TGGCCA	2 cut(s)	698, 720
MluCI	AATT	3 cut(s)	158, 294, 645
MluNI	TGGCCA	2 cut(s)	698, 720
MlyI	GAGTC	2 cut(s)	243, 758
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	5 cut(s)	39, 52, 89, 477, 568
Mox20I	TGGCCA	2 cut(s)	698, 720
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	2 cut(s)	698, 720
MseI	TTAA	2 cut(s)	401, 804
Msp20I	TGGCCA	2 cut(s)	698, 720
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	4 cut(s)	211, 217, 238, 827
MspR9I	CCNGG	3 cut(s)	33, 211, 212
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	704, 767
NciI	CCSGG	2 cut(s)	211, 212
NdeII	GATC	5 cut(s)	148, 471, 511, 679, 739
NlaIII	CATG	6 cut(s)	392, 445, 491, 631, 694, 844
NlaIV	GGNNCC	5 cut(s)	44, 215, 439, 461, 642
NmeAIII	GCCGAG	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	2 cut(s)	491, 694
NspV	TTCGAA	1 cut(s)	410
PfeI	GAWTC	5 cut(s)	407, 527, 774, 787, 823
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	2 cut(s)	242, 758
PpsI	GAGTC	2 cut(s)	242, 758
PpuMI	RGGWCCY	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	44, 215, 439, 461, 642
PspPI	GGNCC	5 cut(s)	214, 240, 438, 460, 641
PspPPI	RGGWCCY	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	3 cut(s)	197, 224, 833
RsaNI	GTAC	3 cut(s)	196, 223, 832
SaqAI	TTAA	2 cut(s)	401, 804
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	5 cut(s)	148, 471, 511, 679, 739
Sau96I	GGNCC	5 cut(s)	214, 240, 438, 460, 641
SchI	GAGTC	2 cut(s)	243, 758
ScrFI	CCNGG	3 cut(s)	33, 211, 212
SduI	GDGCHC	2 cut(s)	110, 284
SetI	ASST	7 cut(s)	44, 81, 265, 559, 657, 728, 803
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	4 cut(s)	214, 438, 460, 641
SmaI	CCCGGG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	158, 294, 645
StyD4I	CCNGG	3 cut(s)	31, 209, 210
StyI	CCWWGG	2 cut(s)	152, 596
TaaI	ACNGT	2 cut(s)	256, 302
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	2 cut(s)	132, 410
TasI	AATT	3 cut(s)	158, 294, 645
TfiI	GAWTC	5 cut(s)	407, 527, 774, 787, 823
Tru1I	TTAA	2 cut(s)	401, 804
Tru9I	TTAA	2 cut(s)	401, 804
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	204, 800, 857
TspGWI	ACGGA	2 cut(s)	246, 389
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	4 cut(s)	214, 438, 460, 641
XceI	RCATGY	2 cut(s)	491, 694
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.