Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019144

Physical Location & Seq

Genomic Coordinates Forward (+)

61909433 .. 61910841

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACCAATCACAGCCCCTGTGACGCTACAAAACGACAAATTCCCCCAACCATAAAAGGAGGAGCCCTCTCCGTTCAAACATTTCAAACACTTCATTTCTCTAAAACCCTAACTATCAGTAGGTTTGATCCAGCTTTGTTGCCGACCACAACAATGGAGGCCAATAATGGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTATTACCTCAAAAACCAAGCCATTTCAAAGCCGTGCCCTGTTTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCTTGGCAATTGCCTGAGAAAGCAGAGTTTGGAGAAAATGAATGGTACTTCTTCAGCCCCCGGGACCGGAAGTACCCGAACGGAGTCCGGCCCAATCGCGCAACCGTGTCAGGTTATTGGAAGGCCACCGGCACAGACAAGGCAATTCACAGTGCGTCTAAGTATGTGGGGGTGAAGAAGGCTCTTGTTTTCTACAAGGGTAGACCACCAAAGGGGGTCAAGACGGATTGGATTATGCATGAGTATCGGTTAAGTGATTCGAAAAGACAGGCCAGCAAGCAACTTGGGTCCATGAGATTGGACGATTGGGTCCTGTGTAGGATCTATAAGAAGAGGCATGTCAACAAGGCTTACTTGGATGATCCAAAACTTGAAGATTCAAGTCCCCAAATGGAGCATTTTACAGCTGCTAATGATGTCAAAGAGGAACAAGTGCTGAACTTCCCAAGGACATTTTCCCTTACTAGCCTTTTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGACAATCCAACTTATGATTTCCACAACATGCTGGCCAATAATGCAGGACTAAATGGCCAGACGTTTCAGTTTGGTGATCAAATCCCATACCAAAGCGCAGACTCGGCGAGATTCCAAGTGATGAATCATAGTGGCACCTTTAACCAACCATTATTTGTGAATCCGGCGTACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

337

Amino Acids

38.38

Weight (kDa)

8.74

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	61 - 185	6e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31070
rosa_chinensis	RchiOBHm_Chr4g0439451
rosa_laevigata	RLG00000006270
rosa_multiflora	Rmu_sc0007276.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380360
rosa_rugosa	Rorug04G0318400.1
rosa_samantha	Rh4BG381500
rosa_wichuraiana	Rw4G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	950
AccI	GTMKAC	1 cut(s)	505
AccII	CGCG	1 cut(s)	402
AclWI	GGATC	4 cut(s)	122, 296, 632, 659
AcoI	YGGCCR	2 cut(s)	849, 871
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	340
AfaI	GTAC	3 cut(s)	350, 377, 986
AfiI	CCNNNNNNNGG	2 cut(s)	369, 515
AgsI	TTSAA	7 cut(s)	77, 86, 252, 677, 684, 814, 1006
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	3 cut(s)	134, 710, 808
AluI	AGCT	3 cut(s)	134, 710, 808
AlwI	GGATC	4 cut(s)	122, 296, 632, 659
AlwNI	CAGNNNCTG	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	6 cut(s)	159, 392, 426, 573, 849, 871
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	404, 914
AspS9I	GGNCC	5 cut(s)	367, 393, 591, 613, 794
AsuC2I	CCSGG	2 cut(s)	364, 365
AsuHPI	GGTGA	2 cut(s)	487, 902
AsuII	TTCGAA	1 cut(s)	563
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	4 cut(s)	367, 591, 613, 794
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	2 cut(s)	851, 873
BanI	GGYRCC	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	2 cut(s)	364, 365
BfaI	CTAG	1 cut(s)	768
BisI	GCNGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	3 cut(s)	186, 364, 365
Bme18I	GGWCC	4 cut(s)	367, 591, 613, 794
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	5 cut(s)	367, 393, 591, 613, 794
BmiI	GGNNCC	7 cut(s)	64, 197, 368, 592, 614, 795, 952
BmrFI	CCNGG	3 cut(s)	186, 364, 365
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
Bpu14I	TTCGAA	1 cut(s)	563
BpuMI	CCSGG	2 cut(s)	364, 365
BsaJI	CCNNGG	4 cut(s)	305, 362, 363, 749
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 515
Bse118I	RCCGGY	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	305, 362, 363, 749
BseGI	GGATG	2 cut(s)	273, 667
BseLI	CCNNNNNNNGG	2 cut(s)	369, 515
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	6 cut(s)	161, 394, 428, 575, 851, 873
BshNI	GGYRCC	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	5 cut(s)	364, 370, 391, 432, 980
BslFI	GGGAC	3 cut(s)	380, 672, 807
BslI	CCNNNNNNNGG	2 cut(s)	369, 515
BsmFI	GGGAC	3 cut(s)	380, 672, 807
BsnI	GGCC	6 cut(s)	161, 394, 428, 575, 851, 873
BsoBI	CYCGRG	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	67, 263
Bsp143I	GATC	5 cut(s)	127, 301, 624, 664, 892
BspANI	GGCC	6 cut(s)	161, 394, 428, 575, 851, 873
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	7 cut(s)	64, 197, 368, 592, 614, 795, 952
BspPI	GGATC	4 cut(s)	122, 296, 632, 659
BspT104I	TTCGAA	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	950
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	4 cut(s)	305, 362, 363, 749
BssMI	GATC	5 cut(s)	127, 301, 624, 664, 892
BssT1I	CCWWGG	2 cut(s)	305, 749
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	409, 455
Bst6I	CTCTTC	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	577, 581, 849
BstDEI	CTNAG	2 cut(s)	318, 462
BstF5I	GGATG	2 cut(s)	273, 667
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	404, 914
BstKTI	GATC	5 cut(s)	130, 304, 627, 667, 895
BstMBI	GATC	5 cut(s)	127, 301, 624, 664, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 920
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	2 cut(s)	644, 847
BstSCI	CCNGG	3 cut(s)	184, 362, 363
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	624
BstXI	CCANNNNNNTGG	2 cut(s)	154, 601
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	6 cut(s)	161, 394, 428, 575, 851, 873
BtsCI	GGATG	2 cut(s)	273, 667
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	577, 581, 849
CaiI	CAGNNNCTG	1 cut(s)	18
CfoI	GCGC	2 cut(s)	404, 914
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	5 cut(s)	367, 393, 591, 613, 794
Cfr9I	CCCGGG	1 cut(s)	363
CseI	GACGC	2 cut(s)	32, 447
Csp6I	GTAC	3 cut(s)	349, 376, 985
CviAII	CATG	6 cut(s)	542, 595, 641, 781, 844, 994
CviQI	GTAC	3 cut(s)	349, 376, 985
DdeI	CTNAG	2 cut(s)	318, 462
DpnI	GATC	5 cut(s)	129, 303, 626, 666, 894
DpnII	GATC	5 cut(s)	127, 301, 624, 664, 892
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EaeI	YGGCCR	2 cut(s)	849, 871
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	2 cut(s)	305, 749
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	4 cut(s)	367, 591, 613, 794
Eco57I	CTGAAG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	305, 749
EcoT22I	ATGCAT	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	305, 749
FaeI	CATG	6 cut(s)	545, 598, 644, 784, 847, 997
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	3 cut(s)	380, 672, 807
FatI	CATG	6 cut(s)	541, 594, 640, 780, 843, 993
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	2 cut(s)	260, 674
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	2 cut(s)	403, 913
GluI	GCNGC	1 cut(s)	711
GsaI	CCCAGC	1 cut(s)	808
HaeIII	GGCC	6 cut(s)	161, 394, 428, 575, 851, 873
HapII	CCGG	5 cut(s)	364, 370, 391, 432, 980
HgaI	GACGC	2 cut(s)	32, 447
HhaI	GCGC	2 cut(s)	404, 914
Hin1II	CATG	6 cut(s)	545, 598, 644, 784, 847, 997
Hin6I	GCGC	2 cut(s)	402, 912
HinP1I	GCGC	2 cut(s)	402, 912
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	7 cut(s)	387, 560, 680, 917, 927, 940, 976
HpaII	CCGG	5 cut(s)	364, 370, 391, 432, 980
HphI	GGTGA	2 cut(s)	487, 902
Hpy166II	GTNNAC	2 cut(s)	506, 646
Hpy188III	TCNNGA	2 cut(s)	174, 523
Hpy8I	GTNNAC	2 cut(s)	506, 646
HpyAV	CCTTC	2 cut(s)	418, 475
HpyCH4III	ACNGT	2 cut(s)	409, 455
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	2 cut(s)	541, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 920
HpyF3I	CTNAG	2 cut(s)	318, 462
HpySE526I	ACGT	1 cut(s)	878
Hsp92II	CATG	6 cut(s)	545, 598, 644, 784, 847, 997
HspAI	GCGC	2 cut(s)	402, 912
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	127, 301, 624, 664, 892
LmnI	GCTCC	2 cut(s)	62, 697
Lsp1109I	GCAGC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	129, 303, 626, 666, 894
MboI	GATC	5 cut(s)	127, 301, 624, 664, 892
MboII	GAAGA	4 cut(s)	346, 490, 646, 689
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	67, 263
MlsI	TGGCCA	2 cut(s)	851, 873
MluCI	AATT	4 cut(s)	39, 311, 447, 798
MluNI	TGGCCA	2 cut(s)	851, 873
MlyI	GAGTC	2 cut(s)	396, 911
MmeI	TCCRAC	1 cut(s)	848
MnlI	CCTC	8 cut(s)	53, 77, 151, 192, 205, 242, 630, 721
Mox20I	TGGCCA	2 cut(s)	851, 873
Mph1103I	ATGCAT	1 cut(s)	543
MscI	TGGCCA	2 cut(s)	851, 873
MseI	TTAA	2 cut(s)	554, 957
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	2 cut(s)	851, 873
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	5 cut(s)	364, 370, 391, 432, 980
MspR9I	CCNGG	3 cut(s)	186, 364, 365
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	857, 920
NciI	CCSGG	2 cut(s)	364, 365
NdeII	GATC	5 cut(s)	127, 301, 624, 664, 892
NlaIII	CATG	6 cut(s)	545, 598, 644, 784, 847, 997
NlaIV	GGNNCC	7 cut(s)	64, 197, 368, 592, 614, 795, 952
NmeAIII	GCCGAG	1 cut(s)	899
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	2 cut(s)	644, 847
NspV	TTCGAA	1 cut(s)	563
PfeI	GAWTC	5 cut(s)	560, 680, 927, 940, 976
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	2 cut(s)	395, 911
PpsI	GAGTC	2 cut(s)	395, 911
PpuMI	RGGWCCY	1 cut(s)	613
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	7 cut(s)	64, 197, 368, 592, 614, 795, 952
PspPI	GGNCC	5 cut(s)	367, 393, 591, 613, 794
PspPPI	RGGWCCY	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	350, 377, 986
RsaNI	GTAC	3 cut(s)	349, 376, 985
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	554, 957
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	5 cut(s)	127, 301, 624, 664, 892
Sau96I	GGNCC	5 cut(s)	367, 393, 591, 613, 794
SchI	GAGTC	2 cut(s)	396, 911
ScrFI	CCNGG	3 cut(s)	186, 364, 365
SduI	GDGCHC	2 cut(s)	67, 263
SetI	ASST	9 cut(s)	125, 136, 197, 234, 418, 712, 810, 881, 956
SfuI	TTCGAA	1 cut(s)	563
SinI	GGWCC	4 cut(s)	367, 591, 613, 794
SmaI	CCCGGG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	39, 311, 447, 798
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	3 cut(s)	184, 362, 363
StyI	CCWWGG	2 cut(s)	305, 749
TaaI	ACNGT	2 cut(s)	409, 455
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	2 cut(s)	285, 563
TasI	AATT	4 cut(s)	39, 311, 447, 798
TfiI	GAWTC	5 cut(s)	560, 680, 927, 940, 976
Tru1I	TTAA	2 cut(s)	554, 957
Tru9I	TTAA	2 cut(s)	554, 957
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	83, 357, 953, 1010
TspGWI	ACGGA	3 cut(s)	61, 399, 542
TspMI	CCCGGG	1 cut(s)	363
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	4 cut(s)	367, 591, 613, 794
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	644, 847
XmaI	CCCGGG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	505
XspI	CTAG	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.