Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0019144

Physical Location & Seq

Genomic Coordinates Forward (+)

58658817 .. 58660520

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGACCAATCACAGCCCCTGTGACGCTACAAAACGACAAATTCCCCCAACCATAAAAGGAGGAGCCCTCTCCGTTCAAACATTTCAAACACTTCATTTCTCTAAAACCCTAACTATCTGTTTAGCTTCTAGCAGTAGGTTTGATCCAGCTTTGTTGCCAACCACAACAATGGAGCCCAATAATGGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTATTACCTCAAAAACCAAGCCATTTCAAAGCCGTGCCCTGTTTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCTTGGCAATTGCCTGAGAAAGCAGAGTTTGGAGAAAATGAATGGTACTTCTTCAGCCCCCGGGACCGGAAGTACCCGAACGGAGTCCGGCCCAATCGCGCAACCGTGTCAGGTTATTGGAAGGCCACCGGCACAGACAAGGCAATTCACAGTGCGTCTAAGTATGTGGGGGTGAAGAAGGCTCTTGTTTTCTACAAGGGTAGACCACCAAAGGGGGTCAAGACGGATTGGATTATGCATGAGTATCGGTTAAGTGATTCGAAAAGACAGGCCAGCAAGCAACTTGGGTCCATGAGATTGGATGATTGGGTCCTGTGTAGGATCTATAAGAAGAGGCATGTCAACAAGGCTTACTTGGATGACCCAAAACTTGAGGATTCAAGTCCCCAAATGGAGCATTTTACAGCTGCTAATGATGTCAAAGAGGAACAAGTGCTGAACTTCCCAAGGACATTTTCCCTTACTAGCCTTTTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGACAATCCAACTTATGATCTCCACAACATGCTGGCCAATAATGCAGGACTAAATGGCCAGACGTTTCAGTTTGGTGATCAAATCCCATACCAAAGCGCAGACTCGGCGAGATTCCAAGTGATGAATCATAGTAGCACCTTTAACCAACCATTATTTGTGAATCCGGCGTACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

342

Amino Acids

38.87

Weight (kDa)

8.68

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	66 - 190	6.2e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31070
rosa_chinensis	RchiOBHm_Chr4g0439451
rosa_laevigata	RLG00000006270
rosa_multiflora	Rmu_sc0007276.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380360
rosa_rugosa	Rorug04G0318400.1
rosa_samantha	Rh4BG381500
rosa_wichuraiana	Rw4G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	520
AccII	CGCG	1 cut(s)	417
AclWI	GGATC	3 cut(s)	137, 311, 647
AcoI	YGGCCR	2 cut(s)	864, 886
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	3 cut(s)	365, 392, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	182, 384, 530
AgsI	TTSAA	6 cut(s)	77, 86, 267, 699, 829, 1021
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
AluBI	AGCT	4 cut(s)	125, 149, 725, 823
AluI	AGCT	4 cut(s)	125, 149, 725, 823
AlwI	GGATC	3 cut(s)	137, 311, 647
AlwNI	CAGNNNCTG	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	5 cut(s)	407, 441, 588, 864, 886
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	419, 929
AspS9I	GGNCC	5 cut(s)	382, 408, 606, 628, 809
AsuC2I	CCSGG	2 cut(s)	379, 380
AsuHPI	GGTGA	2 cut(s)	502, 917
AsuII	TTCGAA	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	4 cut(s)	382, 606, 628, 809
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	2 cut(s)	866, 888
BanII	GRGCYC	2 cut(s)	67, 177
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	2 cut(s)	379, 380
BfaI	CTAG	2 cut(s)	129, 783
BisI	GCNGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	3 cut(s)	201, 379, 380
Bme18I	GGWCC	4 cut(s)	382, 606, 628, 809
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	5 cut(s)	382, 408, 606, 628, 809
BmiI	GGNNCC	7 cut(s)	64, 174, 212, 383, 607, 629, 810
BmrFI	CCNGG	3 cut(s)	201, 379, 380
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
Bpu14I	TTCGAA	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	379, 380
BsaJI	CCNNGG	4 cut(s)	320, 377, 378, 764
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 384, 530
Bse118I	RCCGGY	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	320, 377, 378, 764
BseGI	GGATG	3 cut(s)	288, 625, 682
BseLI	CCNNNNNNNGG	3 cut(s)	182, 384, 530
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	712
BseYI	CCCAGC	1 cut(s)	819
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	5 cut(s)	409, 443, 590, 866, 888
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	5 cut(s)	379, 385, 406, 447, 995
BslFI	GGGAC	3 cut(s)	395, 687, 822
BslI	CCNNNNNNNGG	3 cut(s)	182, 384, 530
BsmFI	GGGAC	3 cut(s)	395, 687, 822
BsnI	GGCC	5 cut(s)	409, 443, 590, 866, 888
BsoBI	CYCGRG	1 cut(s)	378
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	67, 177, 278
Bsp143I	GATC	5 cut(s)	142, 316, 639, 847, 907
BspANI	GGCC	5 cut(s)	409, 443, 590, 866, 888
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	7 cut(s)	64, 174, 212, 383, 607, 629, 810
BspPI	GGATC	3 cut(s)	137, 311, 647
BspT104I	TTCGAA	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	4 cut(s)	320, 377, 378, 764
BssMI	GATC	5 cut(s)	142, 316, 639, 847, 907
BssT1I	CCWWGG	2 cut(s)	320, 764
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	424, 470
Bst6I	CTCTTC	1 cut(s)	644
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	592, 596, 864
BstDEI	CTNAG	2 cut(s)	333, 477
BstF5I	GGATG	3 cut(s)	288, 625, 682
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	419, 929
BstKTI	GATC	5 cut(s)	145, 319, 642, 850, 910
BstMBI	GATC	5 cut(s)	142, 316, 639, 847, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	872, 935
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	2 cut(s)	659, 862
BstSCI	CCNGG	3 cut(s)	199, 377, 378
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	639
BstXI	CCANNNNNNTGG	2 cut(s)	169, 616
BstYI	RGATCY	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	409, 443, 590, 866, 888
BtsCI	GGATG	3 cut(s)	288, 625, 682
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	592, 596, 864
CaiI	CAGNNNCTG	1 cut(s)	18
CfoI	GCGC	2 cut(s)	419, 929
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	5 cut(s)	382, 408, 606, 628, 809
Cfr9I	CCCGGG	1 cut(s)	378
CseI	GACGC	2 cut(s)	32, 462
Csp6I	GTAC	3 cut(s)	364, 391, 1000
CviAII	CATG	6 cut(s)	557, 610, 656, 796, 859, 1009
CviQI	GTAC	3 cut(s)	364, 391, 1000
DdeI	CTNAG	2 cut(s)	333, 477
DpnI	GATC	5 cut(s)	144, 318, 641, 849, 909
DpnII	GATC	5 cut(s)	142, 316, 639, 847, 907
EaeI	YGGCCR	2 cut(s)	864, 886
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	2 cut(s)	320, 764
Eco24I	GRGCYC	2 cut(s)	67, 177
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	4 cut(s)	382, 606, 628, 809
Eco57I	CTGAAG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	320, 764
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	67, 177
ErhI	CCWWGG	2 cut(s)	320, 764
FaeI	CATG	6 cut(s)	560, 613, 659, 799, 862, 1012
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	3 cut(s)	395, 687, 822
FatI	CATG	6 cut(s)	556, 609, 655, 795, 858, 1008
FbaI	TGATCA	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	3 cut(s)	275, 632, 689
FriOI	GRGCYC	2 cut(s)	67, 177
Fsp4HI	GCNGC	1 cut(s)	726
FspBI	CTAG	2 cut(s)	129, 783
GlaI	GCGC	2 cut(s)	418, 928
GluI	GCNGC	1 cut(s)	726
GsaI	CCCAGC	1 cut(s)	823
HaeIII	GGCC	5 cut(s)	409, 443, 590, 866, 888
HapII	CCGG	5 cut(s)	379, 385, 406, 447, 995
HgaI	GACGC	2 cut(s)	32, 462
HhaI	GCGC	2 cut(s)	419, 929
Hin1II	CATG	6 cut(s)	560, 613, 659, 799, 862, 1012
Hin6I	GCGC	2 cut(s)	417, 927
HinP1I	GCGC	2 cut(s)	417, 927
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	7 cut(s)	402, 575, 695, 932, 942, 955, 991
HpaII	CCGG	5 cut(s)	379, 385, 406, 447, 995
HphI	GGTGA	2 cut(s)	502, 917
Hpy166II	GTNNAC	2 cut(s)	521, 661
Hpy188III	TCNNGA	2 cut(s)	189, 538
Hpy8I	GTNNAC	2 cut(s)	521, 661
HpyAV	CCTTC	2 cut(s)	433, 490
HpyCH4III	ACNGT	2 cut(s)	424, 470
HpyCH4IV	ACGT	1 cut(s)	893
HpyCH4V	TGCA	2 cut(s)	556, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	872, 935
HpyF3I	CTNAG	2 cut(s)	333, 477
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	6 cut(s)	560, 613, 659, 799, 862, 1012
HspAI	GCGC	2 cut(s)	417, 927
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	142, 316, 639, 847, 907
LmnI	GCTCC	3 cut(s)	62, 172, 712
Lsp1109I	GCAGC	1 cut(s)	712
MaeI	CTAG	2 cut(s)	129, 783
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	144, 318, 641, 849, 909
MboI	GATC	5 cut(s)	142, 316, 639, 847, 907
MboII	GAAGA	3 cut(s)	361, 505, 661
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	639
MhlI	GDGCHC	3 cut(s)	67, 177, 278
MlsI	TGGCCA	2 cut(s)	866, 888
MluCI	AATT	4 cut(s)	39, 326, 462, 813
MluNI	TGGCCA	2 cut(s)	866, 888
MlyI	GAGTC	2 cut(s)	411, 926
MmeI	TCCRAC	1 cut(s)	863
MnlI	CCTC	8 cut(s)	53, 77, 207, 220, 257, 645, 685, 736
Mox20I	TGGCCA	2 cut(s)	866, 888
Mph1103I	ATGCAT	1 cut(s)	558
MscI	TGGCCA	2 cut(s)	866, 888
MseI	TTAA	2 cut(s)	569, 972
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	2 cut(s)	866, 888
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	5 cut(s)	379, 385, 406, 447, 995
MspR9I	CCNGG	3 cut(s)	201, 379, 380
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	872, 935
NciI	CCSGG	2 cut(s)	379, 380
NdeII	GATC	5 cut(s)	142, 316, 639, 847, 907
NlaIII	CATG	6 cut(s)	560, 613, 659, 799, 862, 1012
NlaIV	GGNNCC	7 cut(s)	64, 174, 212, 383, 607, 629, 810
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	659, 862
NspV	TTCGAA	1 cut(s)	578
PfeI	GAWTC	5 cut(s)	575, 695, 942, 955, 991
PkrI	GCNGC	1 cut(s)	727
PleI	GAGTC	2 cut(s)	410, 926
PpsI	GAGTC	2 cut(s)	410, 926
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	7 cut(s)	64, 174, 212, 383, 607, 629, 810
PspPI	GGNCC	5 cut(s)	382, 408, 606, 628, 809
PspPPI	RGGWCCY	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	365, 392, 1001
RsaNI	GTAC	3 cut(s)	364, 391, 1000
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	569, 972
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	5 cut(s)	142, 316, 639, 847, 907
Sau96I	GGNCC	5 cut(s)	382, 408, 606, 628, 809
SchI	GAGTC	2 cut(s)	411, 926
ScrFI	CCNGG	3 cut(s)	201, 379, 380
SduI	GDGCHC	3 cut(s)	67, 177, 278
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	4 cut(s)	382, 606, 628, 809
SmaI	CCCGGG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	4 cut(s)	39, 326, 462, 813
SspMI	CTAG	2 cut(s)	129, 783
StyD4I	CCNGG	3 cut(s)	199, 377, 378
StyI	CCWWGG	2 cut(s)	320, 764
TaaI	ACNGT	2 cut(s)	424, 470
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	2 cut(s)	300, 578
TasI	AATT	4 cut(s)	39, 326, 462, 813
TfiI	GAWTC	5 cut(s)	575, 695, 942, 955, 991
Tru1I	TTAA	2 cut(s)	569, 972
Tru9I	TTAA	2 cut(s)	569, 972
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	83, 372, 968, 1025
TspGWI	ACGGA	3 cut(s)	61, 414, 557
TspMI	CCCGGG	1 cut(s)	378
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	4 cut(s)	382, 606, 628, 809
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	659, 862
XmaI	CCCGGG	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	2 cut(s)	129, 783
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.